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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1633 fasta sequence
[TTTGATTATTCGTTCCGGTGTGCGCGAAAGCGGGGAAGGAGCGGGGTACGCATCTGTACCTGTACGGGATCCCGGCGAGATTCAACCTTGCAACCTCATGTCCTTGTGTTCATGTGCTCGTACGATACGAAAATAGAATTCTGATACGTCTGTATAATATAGGGGTGAGAGGGTGCCACTGCCAACTGGTCACCTAGCCCAGAAACCCGGCAAGATGCAGCGCGCGGCGGCGGCCTCGCGCGCCACGGCATGGAGCACGGCACGGCACGGCGCCGCCCGCGTCACCGCCTCCGCCTCCTTCTCCGACGGCGGCGGCATCGTCGCCGGTGCGGCGCTGCCGCTCCGTGTTCGCGGCGGCCAGCTCATGTCCCTGCCGCTGCTGTCGGGTGGCAGGGCGGTCACGGCGAGGGTGGCGGCGGCGGAGGCGCCGTTGCCGGCGGACGACGCCGACGCGGCGGCTGGGCGGGAGAGAGGCGCACTCGCGGAGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTTCAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGCGCCCAGAATCTCCATTTCACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGAGCAAGGTCGCCGTCTCCTTCACCCACACCATCAAGGCGTCCGAGCCCTTCTTCACCGTCCTCCTCTCCGCCTTCTTCCTCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCGTCGCCTTGGCATCGTTGACTGAACTCTCTTTCAACTGGATTGGGTTCTGGAGTGCGATGGCATCGAATCTTCTATACCAATCAAGAAATGTGCTCAGCAAGAAGCTTCTTGGCGGCGAAGAGGAAGCGTTGGATGACATAAACCTCTTCTCAATACTCACTATACTGTCATTTCTGCTGTCTTTGCCTCTGATGCTGTTCTCAGAAGGGGTCAAGTTCAGCCCAGGATACCTCCGGAGCACTGGCCTTAACCTCCAAGAGCTGTGTGTAAGAGCAGCACTAGCTGGCTTTTGCTTCCATGGCTACCAGAAGCTCTCCTACTTGATCCTGGCCAGAGTGTCACCTGTCACCCACTCTGTCGCCAACTGCGTCAAGCGTGTGGTCGTCATCGTGGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCTCGCAGTTTTTGTTTTGATTTGGGATACATAGATTAGGCTTGTACATCGACGAAGAAAATGAGTTGGGTTCGGTTTTAGCACCGATTGTACTACACGACCTACAGTCTCATTTTTCACAAAATTGTAAGAACATTGCTGAATATTCTCAGATCTCGAGAGAAATTCATTAGTGTCCAGGCGCAAAATCAATAAAGCTATCACTTGAGTG]
[+] EMBL AK060343 [TTTGATTATTCGTTCCGGTGTGCGCGAAAGCGGGGAAGGAGCGGGGTACGCATCTGTACCTGTACGGGATCCCGGCGAGATTCAACCTTGCAACCTCATGTCCTTGTGTTCATGTGCTCGTACGATACGAAAATAGAATTCTGATACGTCTGTATAATATAGGGGTGAGAGGGTGCCACTGCCAACTGGTCACCTAGCCCAGAAACCCGGCAAGATGCAGCGCGCGGCGGCGGCCTCGCGCGCCACGGCATGGAGCACGGCACGGCACGGCGCCGCCCGCGTCACCGCCTCCGCCTCCTTCTCCGACGGCGGCGGCATCGTCGCCGGTGCGGCGCTGCCGCTCCGTGTTCGCGGCGGCCAGCTCATGTCCCTGCCGCTGCTGTCGGGTGGCAGGGCGGTCACGGCGAGGGTGGCGGCGGCGGAGGCGCCGTTGCCGGCGGACGACGCCGACGCGGCGGCTGGGCGGGAGAGAGGCGCACTCGCGGAGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTTCAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGCGCCCAGAATCTCCATTTCACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGAGCAAGGTCGCCGTCTCCTTCACCCACACCATCAAGGCGTCCGAGCCCTTCTTCACCGTCCTCCTCTCCGCCTTCTTCCTCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCGTCGCCTTGGCATCGTTGACTGAACTCTCTTTCAACTGGATTGGGTTCTGGAGTGCGATGGCATCGAATCTTCTATACCAATCAAGAAATGTGCTCAGCAAGAAGCTTCTTGGCGGCGAAGAGGAAGCGTTGGATGACATAAACCTCTTCTCAATACTCACTATACTGTCATTTCTGCTGTCTTTGCCTCTGATGCTGTTCTCAGAAGGGGTCAAGTTCAGCCCAGGATACCTCCGGAGCACTGGCCTTAACCTCCAAGAGCTGTGTGTAAGAGCAGCACTAGCTGGCTTTTGCTTCCATGGCTACCAGAAGCTCTCCTACTTGATCCTGGCCAGAGTGTCACCTGTCACCCACTCTGTCGCCAACTGCGTCAAGCGTGTGGTCGTCATCGTGGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCTCGCAGTTTTTGTTTTGATTTGGGATACATAGATTAGGCTTGTACATCGACGAAGAAAATGAGTTGGGTTCGGTTTTAGCACCGATTGTACTACACGACCTACAGTCTCATTTTTCACAAAATTGTAAGAACATTGCTGAATATTCTCAGATCTCGAGAGAAATTCATTAGTGTCCAGGCGCAAAATCAATAAAGCTATCACTTGAGTG]
[+] EMBL CF326520 [ AGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTTCAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTTCCAGCTCGCGTTCGGTTTCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGCGCCCAGAATCTCCATTTCACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGAGCAAGGTCGCCGTCTCCTTCACCCACACCATCAAGGCGTCCGAGCCCTTCTTCACCGTCCTCCTCTCCGCCTTCTTCCTCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCGTCGCCTTGGCATCGTT ]
consensusID : consensus_4606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[CTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTTATCCCGCGCCCAGAATCTCCATTTTCACAGCTGGCCAAGATCGCSCCGCTYGCCGSCGGGSACATKCYGGGGCACVGTGTTCMMCAACMTKAGGSCTKGGSRAARGTYGCSCGTCTTCTTTHAMCCACACMCAWYAAGGGGTKCCGARCCCTTTTTTTAACGTGTCTCTCTCTCNCSVSTTTYTTTCCTCYSGGGGAGACAGCCYTTCTBCTCKCTYGGTGCTCKGGSK]
[+] EMBL AA752595 [CTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTTATCCCGCGCCCAGAATCTCCATTTTCACAGCTGGCCAAGATCGCSCCGCTYGCCGSCGGGSACATKCYGGGGCACVGTGTTCMMCAACMTKAGGSCTKGGSRAARGTYGCSCGTCTTCTTTHAMCCACACMCAWYAAGGGGTKCCGARCCCTTTTTTTAACGTGTCTCTCTCTCNCSVSTTTYTTTCCTCYSGGGGAGACAGCCYTTCTBCTCKCTYGGTGCTCKGGSK]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4606#0 TTTGATTATTCGTTCCGGTGTGCGCGAAAGCGGGGAAGGAGCGGGGTACGCATCTGTACC 60
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 TGTACGGGATCCCGGCGAGATTCAACCTTGCAACCTCATGTCCTTGTGTTCATGTGCTCG 120
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 TACGATACGAAAATAGAATTCTGATACGTCTGTATAATATAGGGGTGAGAGGGTGCCACT 180
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 GCCAACTGGTCACCTAGCCCAGAAACCCGGCAAGATGCAGCGCGCGGCGGCGGCCTCGCG 240
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CGCCACGGCATGGAGCACGGCACGGCACGGCGCCGCCCGCGTCACCGCCTCCGCCTCCTT 300
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CTCCGACGGCGGCGGCATCGTCGCCGGTGCGGCGCTGCCGCTCCGTGTTCGCGGCGGCCA 360
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 GCTCATGTCCCTGCCGCTGCTGTCGGGTGGCAGGGCGGTCACGGCGAGGGTGGCGGCGGC 420
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 GGAGGCGCCGTTGCCGGCGGACGACGCCGACGCGGCGGCTGGGCGGGAGAGAGGCGCACT 480
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CGCGGAGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTT 540
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTT 600
consensus_4606#1 ------------------------------------------CTACACCATCACCGCCTT 18
******************
consensus_4606#0 CCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGC 660
consensus_4606#1 CCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTTATCCCGC 78
**************************************************** *******
consensus_4606#0 GCCCAGAATCTCCATTT-CACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGC 719
consensus_4606#1 GCCCAGAATCTCCATTTTCACAGCTGGCCAAGATCGCSCCGCTYGCCGSCGGGSACATKC 138
***************** ******************* ***** **** **** **** *
consensus_4606#0 TGGG-CACGGTGTTCACCAACATGAG--CCTGAGCAAGGTCGCC-GTCTCCTT-CACCCA 774
consensus_4606#1 YGGGGCACVGTGTTCMMCAACMTKAGGSCTKGGSRAARGTYGCSCGTCTTCTTTHAMCCA 198
*** *** ****** **** * ** * * ** ** ** **** *** * ***
consensus_4606#0 CACC-ATCAAGGCGT-CCGAGCCCTTCTTC-ACCGT----CCTCCTCTCCGCCTTCTTCC 827
consensus_4606#1 CACMCAWYAAGGGGTKCCGARCCCTTTTTTTAACGTGTCTCTCTCTCNCSVSTTTYTTTC 258
*** * **** ** **** ***** ** * *** * *** * ** ** *
consensus_4606#0 ---TCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCG 884
consensus_4606#1 CTCYSGGGGAGACAGCCYTTCTBCTCKCTYGGTGCTCKGGSK------------------ 300
** ***** * ** ** * ****
consensus_4606#0 TCGCCTTGGCATCGTTGACTGAACTCTCTTTCAACTGGATTGGGTTCTGGAGTGCGATGG 944
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CATCGAATCTTCTATACCAATCAAGAAATGTGCTCAGCAAGAAGCTTCTTGGCGGCGAAG 1004
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 AGGAAGCGTTGGATGACATAAACCTCTTCTCAATACTCACTATACTGTCATTTCTGCTGT 1064
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CTTTGCCTCTGATGCTGTTCTCAGAAGGGGTCAAGTTCAGCCCAGGATACCTCCGGAGCA 1124
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CTGGCCTTAACCTCCAAGAGCTGTGTGTAAGAGCAGCACTAGCTGGCTTTTGCTTCCATG 1184
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 GCTACCAGAAGCTCTCCTACTTGATCCTGGCCAGAGTGTCACCTGTCACCCACTCTGTCG 1244
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CCAACTGCGTCAAGCGTGTGGTCGTCATCGTGGCGTCTGTTCTCTTCTTCAGAACCCCAA 1304
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 TTTCACCTGTCAATGCACTAGGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCA 1364
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 GGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTC 1424
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 TCGCAGTTTTTGTTTTGATTTGGGATACATAGATTAGGCTTGTACATCGACGAAGAAAAT 1484
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 GAGTTGGGTTCGGTTTTAGCACCGATTGTACTACACGACCTACAGTCTCATTTTTCACAA 1544
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 AATTGTAAGAACATTGCTGAATATTCTCAGATCTCGAGAGAAATTCATTAGTGTCCAGGC 1604
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 GCAAAATCAATAAAGCTATCACTTGAGTG 1633
consensus_4606#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||