cluster # 4615

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Oryza sativa
cluster # 4615 cluster # 4615 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4615#0 length = 1602 sequences # 2

consensus_4615#1 length = 243 sequences # 1

consensusID : consensus_4615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1602
fasta sequence

                              [CAGNGNACGCGTGGGACGGACGTGTGGGGCGCGCGCCGTCCTCCCCCACCGCCATGGCGCCGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTCTGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGCCGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCGACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACNGCCGGAAACGGGAACATCCCGACGCTGGGCACCAAGGACGGCG-CG-CGCCTTGGTGGCGGCGAACATCGCGCCGTACTACCCGGCGACGGACATCTCCCTCGTGGCCGTCGGCAACGAGATCATCAACACGGCGGACAACGCCCTCATCGGCGGCCTCGTCCCGGCCATGCGCACCCTCAGGGCGGCGCTCGTCGCCGCCGGCTTCCGGCGCATCCGCGTCTCGACGCCGCACTCCCTCGGCATCCTGTCCGTCTCCTCGCCACCGTCGGCGAGCCGGTTCCTCGACGTCCTCGACCGCACCTTCTTCGCGCCGATGCTGGAGTTCCTCCGCAAGACCAAGTCTCCGTTCGTCGTCAACCCGTACCCCTACTTCGGCTACAACGGCGACACGATCCCGTACGCGCTGGCGCGGCGCCCCAACCCCGGCGTGCTCGACCCGGGCACGGGCATCACCTACACCAGCATGCTCGAGGCGCAGCTGGACTCGGTGTTCTCGGCGATGAAGAAGCTGGGGTTCGAGGACGTGGACATCACGGTGGGGGAGACCGGGTGGCCGACCAAGGCGGAGCCCGGACAAGCCGGCGTGAGCGTCGCCGAGGCGGCGGAGTACAACCGCTACCTCATCGGAGAGGCCAGCTCGGGGTCGGGGACGCCGCTCATGCCGAAGCGGACGTTCGAGACCTACATCTTCGCGCTCTTCAACGAGAACCTCAAGCCGGGTCCCATCGCCGAGCGCAACTTCGGCCTCTTCAAGCCCGACCTCACGCCCATGTACGACGTCGGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGCAATGCCAGCGGCGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCTGATGAGGCGAGTGCGCCCGCGCCGTCGTCGGTGGGGAAGAAGGTCTCCACGAAGGCCACCGCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGCGAATCGGCCGACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACGACGCCGGGGGGCGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATT]

[+] EMBL C72847               [CAGNGNACGCGTGGGACGGACGTGTGGGGCGCGCGCCGTCCTCCCCCACCGCCATGGCGCCGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTCTGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGCCGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCGACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACNGCCGGAAACGGGAACATCCCGACGCTGGGCACCAAGGACGGCG CG CGCCTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK068978             [                         attGCGCGCGCCGTCCTCCCCCACCGCCATGGCGCCGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTCTGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGCCGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCGACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACCGCCGGAAACGGCGACATCCCGACGCTGGGCACCAAGGACGGCGCCGCCGCCTGGGTGGCGGCGAACATCGCGCCGTACTACCCGGCGACGGACATCTCCCTCGTGGCCGTCGGCAACGAGATCATCAACACGGCGGACAACGCCCTCATCGGCGGCCTCGTCCCGGCCATGCGCACCCTCAGGGCGGCGCTCGTCGCCGCCGGCTTCCGGCGCATCCGCGTCTCGACGCCGCACTCCCTCGGCATCCTGTCCGTCTCCTCGCCACCGTCGGCGAGCCGGTTCCTCGACGTCCTCGACCGCACCTTCTTCGCGCCGATGCTGGAGTTCCTCCGCAAGACCAAGTCTCCGTTCGTCGTCAACCCGTACCCCTACTTCGGCTACAACGGCGACACGATCCCGTACGCGCTGGCGCGGCGCCCCAACCCCGGCGTGCTCGACCCGGGCACGGGCATCACCTACACCAGCATGCTCGAGGCGCAGCTGGACTCGGTGTTCTCGGCGATGAAGAAGCTGGGGTTCGAGGACGTGGACATCACGGTGGGGGAGACCGGGTGGCCGACCAAGGCGGAGCCCGGACAAGCCGGCGTGAGCGTCGCCGAGGCGGCGGAGTACAACCGCTACCTCATCGGAGAGGCCAGCTCGGGGTCGGGGACGCCGCTCATGCCGAAGCGGACGTTCGAGACCTACATCTTCGCGCTCTTCAACGAGAACCTCAAGCCGGGTCCCATCGCCGAGCGCAACTTCGGCCTCTTCAAGCCCGACCTCACGCCCATGTACGACGTCGGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGCAATGCCAGCGGCGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCTGATGAGGCGAGTGCGCCCGCGCCGTCGTCGGTGGGGAAGAAGGTCTCCACGAAGGCCACCGCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGCGAATCGGCCGACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACGACGCCGGGGGGCGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATT]




>consensus_4615#0
CAGNGNACGCGTGGGACGGACGTGTGGGGCGCGCGCCGTCCTCCCCCACCGCCATGGCGC
CGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTC
TGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGC
CGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCG
ACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACNG
CCGGAAACGGGAACATCCCGACGCTGGGCACCAAGGACGGCGCGCGCCTTGGTGGCGGCG
AACATCGCGCCGTACTACCCGGCGACGGACATCTCCCTCGTGGCCGTCGGCAACGAGATC
ATCAACACGGCGGACAACGCCCTCATCGGCGGCCTCGTCCCGGCCATGCGCACCCTCAGG
GCGGCGCTCGTCGCCGCCGGCTTCCGGCGCATCCGCGTCTCGACGCCGCACTCCCTCGGC
ATCCTGTCCGTCTCCTCGCCACCGTCGGCGAGCCGGTTCCTCGACGTCCTCGACCGCACC
TTCTTCGCGCCGATGCTGGAGTTCCTCCGCAAGACCAAGTCTCCGTTCGTCGTCAACCCG
TACCCCTACTTCGGCTACAACGGCGACACGATCCCGTACGCGCTGGCGCGGCGCCCCAAC
CCCGGCGTGCTCGACCCGGGCACGGGCATCACCTACACCAGCATGCTCGAGGCGCAGCTG
GACTCGGTGTTCTCGGCGATGAAGAAGCTGGGGTTCGAGGACGTGGACATCACGGTGGGG
GAGACCGGGTGGCCGACCAAGGCGGAGCCCGGACAAGCCGGCGTGAGCGTCGCCGAGGCG
GCGGAGTACAACCGCTACCTCATCGGAGAGGCCAGCTCGGGGTCGGGGACGCCGCTCATG
CCGAAGCGGACGTTCGAGACCTACATCTTCGCGCTCTTCAACGAGAACCTCAAGCCGGGT
CCCATCGCCGAGCGCAACTTCGGCCTCTTCAAGCCCGACCTCACGCCCATGTACGACGTC
GGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGC
AATGCCAGCGGCGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCT
GATGAGGCGAGTGCGCCCGCGCCGTCGTCGGTGGGGAAGAAGGTCTCCACGAAGGCCACC
GCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGCGAATCGGCC
GACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACG
ACGCCGGGGGGCGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAG
AGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATG
TTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTT
CTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATT

consensusID : consensus_4615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [AGAGGACGAGACAAGGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATTGGTTTTTGCCAAACACTGAAAAACTGCTTCTGTTAAAAAAAAAAAAA]

[-] EMBL CA761187             [AGAGGACGAGACAAGGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATTGGTTTTTGCCAAACACTGAAAAACTGCTTCTGTTAAAAAAAAAAAAA]




>consensus_4615#1
AGAGGACGAGACAAGGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGG
CCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAAT
TGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAG
TGCAAATACTAACATTGGTTTTTGCCAAACACTGAAAAACTGCTTCTGTTAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4615#0      CAGNGNACGCGTGGGACGGACGTGTGGGGCGCGCGCCGTCCTCCCCCACCGCCATGGCGC 60
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      CGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTC 120
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      TGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGC 180
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      CGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCG 240
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      ACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACNG 300
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      CCGGAAACGGGAACATCCCGACGCTGGGCACCAAGGACGGCGCGCGCCTTGGTGGCGGCG 360
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      AACATCGCGCCGTACTACCCGGCGACGGACATCTCCCTCGTGGCCGTCGGCAACGAGATC 420
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      ATCAACACGGCGGACAACGCCCTCATCGGCGGCCTCGTCCCGGCCATGCGCACCCTCAGG 480
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GCGGCGCTCGTCGCCGCCGGCTTCCGGCGCATCCGCGTCTCGACGCCGCACTCCCTCGGC 540
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      ATCCTGTCCGTCTCCTCGCCACCGTCGGCGAGCCGGTTCCTCGACGTCCTCGACCGCACC 600
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      TTCTTCGCGCCGATGCTGGAGTTCCTCCGCAAGACCAAGTCTCCGTTCGTCGTCAACCCG 660
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      TACCCCTACTTCGGCTACAACGGCGACACGATCCCGTACGCGCTGGCGCGGCGCCCCAAC 720
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      CCCGGCGTGCTCGACCCGGGCACGGGCATCACCTACACCAGCATGCTCGAGGCGCAGCTG 780
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GACTCGGTGTTCTCGGCGATGAAGAAGCTGGGGTTCGAGGACGTGGACATCACGGTGGGG 840
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GAGACCGGGTGGCCGACCAAGGCGGAGCCCGGACAAGCCGGCGTGAGCGTCGCCGAGGCG 900
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GCGGAGTACAACCGCTACCTCATCGGAGAGGCCAGCTCGGGGTCGGGGACGCCGCTCATG 960
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      CCGAAGCGGACGTTCGAGACCTACATCTTCGCGCTCTTCAACGAGAACCTCAAGCCGGGT 1020
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      CCCATCGCCGAGCGCAACTTCGGCCTCTTCAAGCCCGACCTCACGCCCATGTACGACGTC 1080
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGC 1140
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      AATGCCAGCGGCGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCT 1200
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GATGAGGCGAGTGCGCCCGCGCCGTCGTCGGTGGGGAAGAAGGTCTCCACGAAGGCCACC 1260
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGCGAATCGGCC 1320
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      GACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACG 1380
consensus_4615#1      ------------------------------------------------------------
                                                                                  

consensus_4615#0      ACGCCGGGGGGCGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAG 1440
consensus_4615#1      --------------------------AGAGGACGAGACAAGGGGTGATGATGCTAAAGAG 34
                                                 ***   **  *   *******************

consensus_4615#0      AGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATG 1500
consensus_4615#1      AGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATG 94
                      ************************************************************

consensus_4615#0      TTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTT 1560
consensus_4615#1      TTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTT 154
                      ************************************************************

consensus_4615#0      CTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATT------------------ 1602
consensus_4615#1      CTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATTGGTTTTTGCCAAACACTG 214
                      ******************************************                  

consensus_4615#0      -----------------------------
consensus_4615#1      AAAAACTGCTTCTGTTAAAAAAAAAAAAA 243