cluster # 4623

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Oryza sativa
cluster # 4623 cluster # 4623 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4623#0 length = 473 sequences # 1

consensus_4623#1 length = 314 sequences # 1
consensus_4623#2 length = 181 sequences # 1

consensusID : consensus_4623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [GAGGCGGCGAGATGGGGGAGGAGGAGGCGGCGGCGGCGGCGGCGAGGGTGGCGGACAGGCGAGGGAGCTGCAGGACGCGGCGGCGGGCCTCCTGTCGAGGTCGTCGGCGGAGGAGGAGGCGCTCCGCCGCCGCGCCGCCGCGNTCGGGGNCGAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGNTCGAGCGACGTGCCTCATAAGCAATGGAGACATTNCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATCTNCGGGCACCGAGGAAGGAGGTTCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATTTTACAATTTGTACTATTTGATGATAATCTATTAGCCATCAAGTTGTGTTTTNAAATGAAAATTTTTGGTGTGGATTCTGGTGTCTTTNAGCTTTCATTTNATAAAAAGT]

[+] EMBL OSS15567A            [GAGGCGGCGAGATGGGGGAGGAGGAGGCGGCGGCGGCGGCGGCGAGGGTGGCGGACAGGCGAGGGAGCTGCAGGACGCGGCGGCGGGCCTCCTGTCGAGGTCGTCGGCGGAGGAGGAGGCGCTCCGCCGCCGCGCCGCCGCGNTCGGGGNCGAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGNTCGAGCGACGTGCCTCATAAGCAATGGAGACATTNCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATCTNCGGGCACCGAGGAAGGAGGTTCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATTTTACAATTTGTACTATTTGATGATAATCTATTAGCCATCAAGTTGTGTTTTNAAATGAAAATTTTTGGTGTGGATTCTGGTGTCTTTNAGCTTTCATTTNATAAAAAGT]




>consensus_4623#0
GAGGCGGCGAGATGGGGGAGGAGGAGGCGGCGGCGGCGGCGGCGAGGGTGGCGGACAGGC
GAGGGAGCTGCAGGACGCGGCGGCGGGCCTCCTGTCGAGGTCGTCGGCGGAGGAGGAGGC
GCTCCGCCGCCGCGCCGCCGCGNTCGGGGNCGAGCTCGCCAGGCTCCGCAAGGCCGCCGC
CCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGNTCGAGCGACGTGCCTCATAAGCAA
TGGAGACATTNCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATC
TNCGGGCACCGAGGAAGGAGGTTCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGG
TATTTTACAATTTGTACTATTTGATGATAATCTATTAGCCATCAAGTTGTGTTTTNAAAT
GAAAATTTTTGGTGTGGATTCTGGTGTCTTTNAGCTTTCATTTNATAAAAAGT

consensusID : consensus_4623#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [GGAGGACTTGGATCGAGCGACGTGCCTCATAANCGATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATNTGCGGGCNCCGAGGAAGGAGGTGCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATGTTACAATTGTACTATTGATGATAATCTATAGCCATCAAGTTGTGTTTTGAAATGAAAATTTTGGGTGTGGCATTNTGGTGTCTTTGAGCTTCCATTTGATAAAGAGTTCAGGAATTTAATTTGCNCATTGATCCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU198076             [GGAGGACTTGGATCGAGCGACGTGCCTCATAANCGATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATNTGCGGGCNCCGAGGAAGGAGGTGCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATGTTACAATTGTACTATTGATGATAATCTATAGCCATCAAGTTGTGTTTTGAAATGAAAATTTTGGGTGTGGCATTNTGGTGTCTTTGAGCTTCCATTTGATAAAGAGTTCAGGAATTTAATTTGCNCATTGATCCAAAAAAAAAAAAAAAAAAAA]




>consensus_4623#1
GGAGGACTTGGATCGAGCGACGTGCCTCATAANCGATGGAGACATTGCGGCGCTGCTCCC
GAGCAAGACACATGATGTTCCTGGGACCAGTAAATNTGCGGGCNCCGAGGAAGGAGGTGC
AGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATGTTACAATTGTACTATTGATG
ATAATCTATAGCCATCAAGTTGTGTTTTGAAATGAAAATTTTGGGTGTGGCATTNTGGTG
TCTTTGAGCTTCCATTTGATAAAGAGTTCAGGAATTTAATTTGCNCATTGATCCAAAAAA
AAAAAAAAAAAAAA

consensusID : consensus_4623#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [GCCGCCGCGCCGCCGNCTACGGNCCGNAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGATCGAGCGACGTGCCTCATAAGCNATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGGTACTTTCCTGAAGATGTTCCTGGGACC]

[+] EMBL OSS2507A             [GCCGCCGCGCCGCCGNCTACGGNCCGNAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGATCGAGCGACGTGCCTCATAAGCNATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGGTACTTTCCTGAAGATGTTCCTGGGACC]




>consensus_4623#2
GCCGCCGCGCCGCCGNCTACGGNCCGNAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACG
CCGACAGCNACAAGGTTGAGGAGGACTTGGATCGAGCGACGTGCCTCATAAGCNATGGAG
ACATTGCGGCGCTGCTCCCGAGCAAGACACATGGTACTTTCCTGAAGATGTTCCTGGGAC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4623#0      GAGGCGGCGAGATGGGGGAGGAGGAGGCGGCGGCGGCGGCGGCGAGGGTGGCGGACAGGC 60
consensus_4623#2      ------------------------------------------------------------
consensus_4623#1      ------------------------------------------------------------
                                                                                  

consensus_4623#0      GAGGGAGCTGCAGGACGCGGCGGCGGGCCTCCTGTCGAGGTCGTCGGCGGAGGAGGAGGC 120
consensus_4623#2      ------------------------------------------------------------
consensus_4623#1      -------------------------GGAGGACTTGGATCGAGCGACGTGCCTCATAANCG 35
                                                                                  

consensus_4623#0      GCTCCGCCGCCGCGCCGCCGCGNTCGGGGNCGAGCTCGCCAGGCTCCGCAAGGCCGCCGC 180
consensus_4623#2      -----GCCGCCGCGCCGCCGNCTACGGNCCGNAGCTCGCCAGGCTCCGCAAGGCCGCCGC 55
consensus_4623#1      ATGGAGACATTGCGGCGCTGCTCCCGAGCAAGA-CACATGATGTTCC-TGGGACCAGTAA 93
                           * *   *** *** *    **      * * *   * * ***    * **     

consensus_4623#0      CCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGNTCGAGCGACGTGCCTCATAAGCAA 240
consensus_4623#2      CCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGATCGAGCGACGTGCCTCATAAGCNA 115
consensus_4623#1      ATNTGCGGGCNCCGAGGAAGGAGGTGCAG-CTCAAGGTGAAGGAAGAGTATAATAGCTAC 152
                          ** * *  * *  * *  *  *  * **      **  ** * *  * ***     

consensus_4623#0      TGGAGACATTNCGGCGCTGCTCCCGAGCAAGACACATGATGTT----CCTGGGACCAGT- 295
consensus_4623#2      TGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGGTACT----TTC----CTGAA- 166
consensus_4623#1      AGGGTATGTTACAATTGTACTATTGATGATAATCTATAGCCATCAAGTTGTGTTTTGAAA 212
                       **  *  ** *     * **   **  *  *   **     *                 

consensus_4623#0      -AAATCTNCGGGCACCGAGGAAGGAGGTTCAGCTCAAGGTGAAGGAAGAGTATAATAGCT 354
consensus_4623#2      -GATGTTCCTGGGACC-------------------------------------------- 181
consensus_4623#1      TGAAAATTTTGGGTGTGGCATTNTGGTGTCTTTGAGCTTCCATTTGATAAAGAGTTCAGG 272
                        *   *   **                                                

consensus_4623#0      ACAGGGTATTTTACAATTTGTACTATTTGATGATAATCTATTAGCCATCAAGTTGTGTTT 414
consensus_4623#2      ------------------------------------------------------------
consensus_4623#1      AATTTAATTTGCNCATTGATCCAAAAAAAAAAAAAAAAAAAA------------------ 314
                                                                                  

consensus_4623#0      TNAAATGAAAATTTTTGGTGTGGATTCTGGTGTCTTTNAGCTTTCATTTNATAAAAAGT 473
consensus_4623#2      -----------------------------------------------------------
consensus_4623#1      -----------------------------------------------------------