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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTATGATACTACAGTTTGCAAAGCACACCATTAGCTATATTTGCCCGGTCCACCGTAGTATACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGATTGTCGGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGCAAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAACATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACCAACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAGGCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAACCCGATGAGCCCACCACCTAAG]
[+] EMBL CA762022 [TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTATGATACTACAGTTTGCAAAGCACACCATTAGCTATATTTGCCCGGTCCACCGTAGTATACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGATTGTCGGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGCAAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAACATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACCAACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAGGCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAACCCGATGAGCCCACCACCTAAG]
consensusID : consensus_4650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[GNTCGATTATTTNCAATAAANAAACTTGTGATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGTNCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTCGGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACTNNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGCAAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAACATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACCAAC]
[-] EMBL CB096581 [GNTCGATTATTTNCAATAAANAAACTTGTGATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGTNCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTCGGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACTNNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGCAAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAACATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACCAAC]
consensusID : consensus_4650#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[TNTCATTATTTCCAATAAAAAAACTNATGATANAACAGTTTGCAAAGCACACCATTAGAATATTTGCCCGGTCCACCGTAGTANACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGATTGTGGTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAATAGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC]
[-] EMBL BE228493 [TNTCATTATTTCCAATAAAAAAACTNATGATANAACAGTTTGCAAAGCACACCATTAGAATATTTGCCCGGTCCACCGTAGTANACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGATTGTGGTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAATAGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4650#0 TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTAT 60
consensus_4650#2 --------------------------------TNTCATTATTTCCAATAAAAAAACTNAT 28
consensus_4650#1 -------------------------------GNTCGATTATTTNCAATAAANAAACTTGT 29
******* ******* ***** *
consensus_4650#0 GATACTACAGTTTGCAAA--GCACACCATTAGCT-ATATTTGCCCGGTCCACCGTAGTAT 117
consensus_4650#2 GATANAACAGTTTGCAAA--GCACACCATTAGA--ATATTTGCCCGGTCCACCGTAGTAN 84
consensus_4650#1 GATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGT 89
*** ***** **** * ********** *** ******** *********
consensus_4650#0 ACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGA-TTGTC 176
consensus_4650#2 ACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGA-TTGTG 143
consensus_4650#1 NCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTC 149
********* ** *************************** ****** ** * ****
consensus_4650#0 GGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAAT 236
consensus_4650#2 GTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAAT 203
consensus_4650#1 GGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAAT 209
* ** ********** **** ************************** ***********
consensus_4650#0 AGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACT 296
consensus_4650#2 AGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACT 263
consensus_4650#1 AGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACT 269
************* ** * ******* *********** *** *** ****** *****
consensus_4650#0 ACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGC 356
consensus_4650#2 ACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC------------------- 304
consensus_4650#1 NNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGC 329
**** *********************** **
consensus_4650#0 AAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGT 416
consensus_4650#2 ------------------------------------------------------------
consensus_4650#1 AAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGT 389
consensus_4650#0 ATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAAC 476
consensus_4650#2 ------------------------------------------------------------
consensus_4650#1 ATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAAC 449
consensus_4650#0 ATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACC 536
consensus_4650#2 ------------------------------------------------------------
consensus_4650#1 ATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACC 509
consensus_4650#0 AACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAG 596
consensus_4650#2 ------------------------------------------------------------
consensus_4650#1 AAC--------------------------------------------------------- 512
consensus_4650#0 GCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAA 656
consensus_4650#2 ------------------------------------------------------------
consensus_4650#1 ------------------------------------------------------------
consensus_4650#0 CCCGATGAGCCCACCACCTAAG 678
consensus_4650#2 ----------------------
consensus_4650#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||