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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1197 fasta sequence
[GCTGTTCTTGGCTTCAAGAAGCTGCGTGTTGCAGAGACTCAGAGAGGCTTGCAAGCAAAATCTACTATTCATTTGGGTCTTGGGTTCTTTGCCCTGATTAATTGTTGGGCGGTTTTGGTGCGAAAGTTTCAGTTTCTTGTGTGATGCAAAAAAAACTGAAATTTTTGTGGAGAGGCAAGGATTGAAACTGCTTGGGTGCCACCGAAGATCGAGTTCATGGTGAATATTGTGAGAGTTCTTGGTGAAGTTCTTGCCTGAGAAGGAAGGTGTGAGAGTTCTTGTCAAGGTTATTGCCTGAGAAGGAAGGTTTTGTGGTCTATCTTGCTGTGATTTGATTTCTCTCCCCTTCTGCAAATCCCCGCCAAAAAATGAGAAGAATTCATTGACATTCTCCTCTCCAATTTCTGATTGTCCTTGCAATCCAGAATGAGCTCAGTTTCTTTGGATGTCATGGCTCCAGCTCTGAGACAAATTATTCACTTATACCCTCTTCAACTACTCTAGCTTCTCCTTTTTTTCCCCTTAGTGTTGTCTGCTTATCTGTATCTCTGTGCAATTCATGGCCCTTTGATACCATTTTAGCCTCCAATTTTCATTGGGATTCATCATGGATAGTACCTTTAGAAAGCTTAAATTAGTTCTAGCTCTTGTTGGGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTTGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCTTATTTATCTTAAAGCCTGAAAAT]
[+] EMBL AK067124 [GCTGTTCTTGGCTTCAAGAAGCTGCGTGTTGCAGAGACTCAGAGAGGCTTGCAAGCAAAATCTACTATTCATTTGGGTCTTGGGTTCTTTGCCCTGATTAATTGTTGGGCGGTTTTGGTGCGAAAGTTTCAGTTTCTTGTGTGATGCAAAAAAAACTGAAATTTTTGTGGAGAGGCAAGGATTGAAACTGCTTGGGTGCCACCGAAGATCGAGTTCATGGTGAATATTGTGAGAGTTCTTGGTGAAGTTCTTGCCTGAGAAGGAAGGTGTGAGAGTTCTTGTCAAGGTTATTGCCTGAGAAGGAAGGTTTTGTGGTCTATCTTGCTGTGATTTGATTTCTCTCCCCTTCTGCAAATCCCCGCCAAAAAATGAGAAGAATTCATTGACATTCTCCTCTCCAATTTCTGATTGTCCTTGCAATCCAGAATGAGCTCAGTTTCTTTGGATGTCATGGCTCCAGCTCTGAGACAAATTATTCACTTATACCCTCTTCAACTACTCTAGCTTCTCCTTTTTTTCCCCTTAGTGTTGTCTGCTTATCTGTATCTCTGTGCAATTCATGGCCCTTTGATACCATTTTAGCCTCCAATTTTCATTGGGATTCATCATGGATAGTACCTTTAGAAAGCTTAAATTAGTTCTAGCTCTTGTTGGGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTTGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCTTATTTATCTTAAAGCCTGAAAAT]
consensusID : consensus_4666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence
[ATGTTAGCACCGCCGTGAAAGGGAGTTTCGGCTATCTTGATCCTGAGTACTACAGGAGGCAGAAGCTGACCGACAAGTCAGACGTGTACTCGTTCGGTGTGGTCTTGCTAGAGGTGATCTGCGCAAGGCCAGTCATCGACCCGACGCTTCCAAGAGACATGATCAACCTTGCAGAGTGGGCTATTAAGTGGCAAAAGAGAGGAGAGCTTGATCAGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTCGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCGTATTTATCTTAAAGCCTGAAAATGGATTATGTTAAAAAAAGGA]
[-] EMBL CB630870 [ATGTTAGCACCGCCGTGAAAGGGAGTTTCGGCTATCTTGATCCTGAGTACTACAGGAGGCAGAAGCTGACCGACAAGTCAGACGTGTACTCGTTCGGTGTGGTCTTGCTAGAGGTGATCTGCGCAAGGCCAGTCATCGACCCGACGCTTCCAAGAGACATGATCAACCTTGCAGAGTGGGCTATTAAGTGGCAAAAGAGAGGAGAGCTTGATCAGATCATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACGGTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCCTGTGGAACCTGGAGTTCGTGCTCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTACCCCTATACTGTACATACATATGTTTCGTATTTATCTTAAAGCCTGAAAATGGATTATGTTAAAAAAAGGA]
consensusID : consensus_4666#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[CTACGATGGGAGATGTCCCTGTGGANCCTGGAGTTTGTGCTCCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATNCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU033168 [CTACGATGGGAGATGTCCCTGTGGANCCTGGAGTTTGTGCTCCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATAGCATGAATCAGATCTCTGAACTCCCTTCAAATNCCCAGAGGATAAGCTCCCTGGAGATCAGCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCTTCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCACTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGATTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGAATTTTTGTTAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4666#0 GCTGTTCTTGGCTTCAAGAAGCTGCGTGTTGCAGAGACTCAGAGAGGCTTGCAAGCAAAA 60
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ------------------------------------------------------------
consensus_4666#0 TCTACTATTCATTTGGGTCTTGGGTTCTTTGCCCTGATTAATTGTTGGGCGGTTTTGGTG 120
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ------------------------------------------------------------
consensus_4666#0 CGAAAGTTTCAGTTTCTTGTGTGATGCAAAAAAAACTGAAATTTTTGTGGAGAGGCAAGG 180
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ------------------------------------------------------------
consensus_4666#0 ATTGAAACTGCTTGGGTGCCACCGAAGATCGAGTTCATGGTGAATATTGTGAGAGTTCTT 240
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ------------------------------------------------------------
consensus_4666#0 GGTGAAGTTCTTGCCTGAGAAGGAAGGTGTGAGAGTTCTTGTCAAGGTTATTGCCTGAGA 300
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ------------------------------------------------------------
consensus_4666#0 AGGAAGGTTTTGTGGTCTATCTTGCTGTGATTTGATTTCTCTCCCCTTCTGCAAATCCCC 360
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ------------------------------------------------------------
consensus_4666#0 GCCAAAAAATGAGAAGAATTCATTGACATTCTCCTCTCCAATTTCTGATTGTCCTTGCAA 420
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ------------------------------------------------ATGTTAGCACCG 12
consensus_4666#0 TCCAGAATGAGCTCAGTTTCTTTGGATGTCATGGCTCCAGCTCTGAGACAAATTATTCAC 480
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 CCGTGAAAGGG---AGTTTC---GGCTATCTTGATCCTGAGTACTACAGGAGGCAGAAGC 66
consensus_4666#0 TTATACCCTCTTCAACTACTCTAGCTTCTCCTTTTTTTCCCCTTAGTGTTGTCTGCTTAT 540
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 TGAC--------CGACAAGTCAGACGTGTACTCGTTC-------GGTGTGGTCTTGCTAG 111
consensus_4666#0 CTGTATCTCTGTGCAATTCATGGCCCTTTGATACCATTTTAGCCTCCAATTTTCATTGGG 600
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 AGGTGA-TCTGCGCAAGGCCAG--TCATCGACCCGAC----GCTTCCAAGAGACAT---G 161
consensus_4666#0 ATTCATCATGGATAGTA--CCTTTAGAAAGCTTAAATTAGTTCTAGCTCTTGTTGGGATC 658
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ATCAACCTTGCAGAGTGGGCTATTAAGTGGCAAAAGAGAGG---AGAGCTTGATCAGATC 218
consensus_4666#0 ATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACG 718
consensus_4666#2 ------------------------------------------------------------
consensus_4666#1 ATCGACAAGAGGATCGCCGGGACAATCAGGCCAGAATCGCTGAGGAAGTACGGGGAGACG 278
consensus_4666#0 GTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCC-TGTG 777
consensus_4666#2 -------------------------------------CTACGATGGGAGATGTCCCTGTG 23
consensus_4666#1 GTGGAGAAATGCCTCGCGGAGTACGGCGTCGAACGGCCTACGATGGGAGATGTCC-TGTG 337
****************** ****
consensus_4666#0 GAACCTGGAGTTTGTGCTCC-AGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATA 836
consensus_4666#2 GANCCTGGAGTTTGTGCTCCCAGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATA 83
consensus_4666#1 GAACCTGGAGTTCGTGCTCC-AGCTGCAGGAGGCAGGCCCGGACATGTCCAACATTGATA 396
** ********* ******* ***************************************
consensus_4666#0 GCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCA 896
consensus_4666#2 GCATGAATCAGATCTCTGAACTCCCTTCAAATNCCCAGAGGATAAGCTCCCTGGAGATCA 143
consensus_4666#1 GCATGAATCAGATCTCTGAACTCCCTTCAAATGCCCAGAGGATAAGCTCCCTGGAGATCA 456
******************************** ***************************
consensus_4666#0 GCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCT 956
consensus_4666#2 GCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCT 203
consensus_4666#1 GCACTGCAGATGAAAGCCGAACGGCCATGGACTACTCTCAGATGTCAACCAGTAATGCCT 516
************************************************************
consensus_4666#0 TCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCA 1016
consensus_4666#2 TCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCA 263
consensus_4666#1 TCTCACAGCTGATCAACACAGAAGGGAGGTGAATTTGGAGTGAAATTGTCCTAAGAGTCA 576
************************************************************
consensus_4666#0 CTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGA 1076
consensus_4666#2 CTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGA 323
consensus_4666#1 CTGCAAAAAAATGTTGAACATGTTCAGTTAGGGAAAATGAGATGTTTCTTGCTCAGTTGA 636
************************************************************
consensus_4666#0 TTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGA 1136
consensus_4666#2 TTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGA 383
consensus_4666#1 TTGTCTACACTCTTGTTTGATTTTGCCCAGATATATATAACAAGCCTTCAATTGCATTGA 696
************************************************************
consensus_4666#0 ATTTTTGTTACCCCTATACTGTACATACATATGTTTCTTATTTATCTTAAAGCCTGAAAA 1196
consensus_4666#2 ATTTTTGTTAAAAAAAAAAAAAAAAAAAAAA----------------------------- 414
consensus_4666#1 ATTTTTGTTACCCCTATACTGTACATACATATGTTTCGTATTTATCTTAAAGCCTGAAAA 756
********** * * * * * * *
consensus_4666#0 T-------------------- 1197
consensus_4666#2 ---------------------
consensus_4666#1 TGGATTATGTTAAAAAAAGGA 777
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||