cluster # 4735

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4735 cluster # 4735 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4735#0 length = 1280 sequences # 1

consensus_4735#1 length = 261 sequences # 1
consensus_4735#2 length = 252 sequences # 1

consensusID : consensus_4735#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1280
fasta sequence

                              [TCCTTCTTCGGTTCTTCCTGCCGCCGCCGCCGCCTCTCGCCGTCGCCGGCGGCTTCTACCTCTCGTTTGCCCTTCTGGTGCGCCCGATCTCTTGCATAGCCTACGACAATGGCCACCTCCGCCTACGCAGCCACCGTCGCCGGGGAAGCAGCGGCGGCGGCGGCGTCGCCGTCCCGTCGTGTCCTTGCCGGTGGCCGACCTCCTCCGCCCTGCATCTCCTTCCTCTCCAAATCGCCGTCCTGGTGCGCCTCGATCTCTCTCCCTCCAGGGCCCCGCCGCGCCGCCGCCGCGGCCGAGGAGAGGGTGGAGGAGGAGGAGCCGACCTGGGTGGAGCTGGAGCCGATCGGCAGCGAGCAGCAGCTGGAGCGTGCCCTCGCGGAGGCGCAGCAGCTCGGCCTCCCCATCGTCCTTCTCTGGATGGCAAGCTGGTGCAGGAAGTGTATATATTTGAAGCCTAAACTAGAGAATTTGGCAGCAGAATGCTATCCAAGAATTCGGTTCTACTGTGTCGATGTCAATGCTGTTCCTCAAAAGCTTGTCAATCGTGCAGGAGTAACAAAGATGCCTTCAATACAGCTGTGGAGTGACTCTCAAAAACAGGCTGAGGTGATTGGTGGACACAAATCCTGGCTAGTAATTGACGATGTTCGGAGGATGATCGATCAGGAGGAATGATCCATTATGTCCTTTAGTGCAAATGATGATGTGATGATGTCCAACAGGAAGAATCTTTCAGTATAGCAAATGGAGAAATCAGAAATCAAAAGCCAGTATGAACTCCTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAGTCAAATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTCGACAGAATTTCACAACCTGTGGCTGCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCTTGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCATGTACTGTCACAGTACGGGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAGTTAATTGGGAT]

[+] EMBL AK102564             [TCCTTCTTCGGTTCTTCCTGCCGCCGCCGCCGCCTCTCGCCGTCGCCGGCGGCTTCTACCTCTCGTTTGCCCTTCTGGTGCGCCCGATCTCTTGCATAGCCTACGACAATGGCCACCTCCGCCTACGCAGCCACCGTCGCCGGGGAAGCAGCGGCGGCGGCGGCGTCGCCGTCCCGTCGTGTCCTTGCCGGTGGCCGACCTCCTCCGCCCTGCATCTCCTTCCTCTCCAAATCGCCGTCCTGGTGCGCCTCGATCTCTCTCCCTCCAGGGCCCCGCCGCGCCGCCGCCGCGGCCGAGGAGAGGGTGGAGGAGGAGGAGCCGACCTGGGTGGAGCTGGAGCCGATCGGCAGCGAGCAGCAGCTGGAGCGTGCCCTCGCGGAGGCGCAGCAGCTCGGCCTCCCCATCGTCCTTCTCTGGATGGCAAGCTGGTGCAGGAAGTGTATATATTTGAAGCCTAAACTAGAGAATTTGGCAGCAGAATGCTATCCAAGAATTCGGTTCTACTGTGTCGATGTCAATGCTGTTCCTCAAAAGCTTGTCAATCGTGCAGGAGTAACAAAGATGCCTTCAATACAGCTGTGGAGTGACTCTCAAAAACAGGCTGAGGTGATTGGTGGACACAAATCCTGGCTAGTAATTGACGATGTTCGGAGGATGATCGATCAGGAGGAATGATCCATTATGTCCTTTAGTGCAAATGATGATGTGATGATGTCCAACAGGAAGAATCTTTCAGTATAGCAAATGGAGAAATCAGAAATCAAAAGCCAGTATGAACTCCTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAGTCAAATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTCGACAGAATTTCACAACCTGTGGCTGCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCTTGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCATGTACTGTCACAGTACGGGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAGTTAATTGGGAT]




>consensus_4735#0
TCCTTCTTCGGTTCTTCCTGCCGCCGCCGCCGCCTCTCGCCGTCGCCGGCGGCTTCTACC
TCTCGTTTGCCCTTCTGGTGCGCCCGATCTCTTGCATAGCCTACGACAATGGCCACCTCC
GCCTACGCAGCCACCGTCGCCGGGGAAGCAGCGGCGGCGGCGGCGTCGCCGTCCCGTCGT
GTCCTTGCCGGTGGCCGACCTCCTCCGCCCTGCATCTCCTTCCTCTCCAAATCGCCGTCC
TGGTGCGCCTCGATCTCTCTCCCTCCAGGGCCCCGCCGCGCCGCCGCCGCGGCCGAGGAG
AGGGTGGAGGAGGAGGAGCCGACCTGGGTGGAGCTGGAGCCGATCGGCAGCGAGCAGCAG
CTGGAGCGTGCCCTCGCGGAGGCGCAGCAGCTCGGCCTCCCCATCGTCCTTCTCTGGATG
GCAAGCTGGTGCAGGAAGTGTATATATTTGAAGCCTAAACTAGAGAATTTGGCAGCAGAA
TGCTATCCAAGAATTCGGTTCTACTGTGTCGATGTCAATGCTGTTCCTCAAAAGCTTGTC
AATCGTGCAGGAGTAACAAAGATGCCTTCAATACAGCTGTGGAGTGACTCTCAAAAACAG
GCTGAGGTGATTGGTGGACACAAATCCTGGCTAGTAATTGACGATGTTCGGAGGATGATC
GATCAGGAGGAATGATCCATTATGTCCTTTAGTGCAAATGATGATGTGATGATGTCCAAC
AGGAAGAATCTTTCAGTATAGCAAATGGAGAAATCAGAAATCAAAAGCCAGTATGAACTC
CTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAG
TCAAATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTC
GACAGAATTTCACAACCTGTGGCTGCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCT
TGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCATGTACTGTCACAGTACG
GGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGG
GCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAAC
TACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTT
TTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTA
TCCTTAAAGTTAATTGGGAT

consensusID : consensus_4735#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [TGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCATGCCGTTACGTAACGTAT]

[+] EMBL CF329381             [TGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCATGCCGTTACGTAACGTAT]




>consensus_4735#1
TGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTG
TGATTGACTTGAACTACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGC
AGGTGTTGCTAGTTTTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGA
ACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTG
GCATGCCGTTACGTAACGTAT

consensusID : consensus_4735#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [ATGGGCTGAAGGAGTAGAAAATTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATAAAATGGACAACTGTGATTGACTTTAATTACTAGTAGTACAAAAAATAGGTCCAGTGTCAGCCTTTTGCAAAGCAGGTGTTTTTATTTTTGTTCAAAAAAGAAAAACAAGCATGTAGGTATATGTTCCCGATGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF329380             [ATGGGCTGAAGGAGTAGAAAATTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTATGGTTCCAAATCCATAAAATGGACAACTGTGATTGACTTTAATTACTAGTAGTACAAAAAATAGGTCCAGTGTCAGCCTTTTGCAAAGCAGGTGTTTTTATTTTTGTTCAAAAAAGAAAAACAAGCATGTAGGTATATGTTCCCGATGAACAAAGTATAGTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4735#2
ATGGGCTGAAGGAGTAGAAAATTAGTCAATGAGCCTTCAGAGGGCATGTTGAAAGTGTTA
TGGTTCCAAATCCATAAAATGGACAACTGTGATTGACTTTAATTACTAGTAGTACAAAAA
ATAGGTCCAGTGTCAGCCTTTTGCAAAGCAGGTGTTTTTATTTTTGTTCAAAAAAGAAAA
ACAAGCATGTAGGTATATGTTCCCGATGAACAAAGTATAGTTATCCTTAAAAAAAAAAAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      TCCTTCTTCGGTTCTTCCTGCCGCCGCCGCCGCCTCTCGCCGTCGCCGGCGGCTTCTACC 60
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      TCTCGTTTGCCCTTCTGGTGCGCCCGATCTCTTGCATAGCCTACGACAATGGCCACCTCC 120
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      GCCTACGCAGCCACCGTCGCCGGGGAAGCAGCGGCGGCGGCGGCGTCGCCGTCCCGTCGT 180
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      GTCCTTGCCGGTGGCCGACCTCCTCCGCCCTGCATCTCCTTCCTCTCCAAATCGCCGTCC 240
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      TGGTGCGCCTCGATCTCTCTCCCTCCAGGGCCCCGCCGCGCCGCCGCCGCGGCCGAGGAG 300
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      AGGGTGGAGGAGGAGGAGCCGACCTGGGTGGAGCTGGAGCCGATCGGCAGCGAGCAGCAG 360
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      CTGGAGCGTGCCCTCGCGGAGGCGCAGCAGCTCGGCCTCCCCATCGTCCTTCTCTGGATG 420
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      GCAAGCTGGTGCAGGAAGTGTATATATTTGAAGCCTAAACTAGAGAATTTGGCAGCAGAA 480
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      TGCTATCCAAGAATTCGGTTCTACTGTGTCGATGTCAATGCTGTTCCTCAAAAGCTTGTC 540
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      AATCGTGCAGGAGTAACAAAGATGCCTTCAATACAGCTGTGGAGTGACTCTCAAAAACAG 600
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      GCTGAGGTGATTGGTGGACACAAATCCTGGCTAGTAATTGACGATGTTCGGAGGATGATC 660
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      GATCAGGAGGAATGATCCATTATGTCCTTTAGTGCAAATGATGATGTGATGATGTCCAAC 720
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      AGGAAGAATCTTTCAGTATAGCAAATGGAGAAATCAGAAATCAAAAGCCAGTATGAACTC 780
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      CTTTCAAGAGATCGAGCCATATATTTAAGTATCGAATCGACGAAATTACTACCTCTACAG 840
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      TCAAATAGGCACTACTACACAAGGCAGCATTTCAATCGTGTTCTCTCCAAATTTGGGGTC 900
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      GACAGAATTTCACAACCTGTGGCTGCATTCCTGTGGTGTCCTTGATGTATCCATGTGTCT 960
                                                                                  

consensus_4735#1      ------------------------------------------------------------
consensus_4735#2      ------------------------------------------------------------
consensus_4735#0      TGTTTGGAAATCTATGCAATTAAAGGCAAAGACTTCTTGCTCATGTACTGTCACAGTACG 1020
                                                                                  

consensus_4735#1      ----------------------------------------------TGAGCCTTCAGAGG 14
consensus_4735#2      -----------------ATGGGCTGAAGGAGTAGAAAATTAGTCAATGAGCCTTCAGAGG 43
consensus_4735#0      GGCAAGCATTTAAATTAGTCATTAGATGACAATAATATTTAGTCAATGAGCCTTCAGAGG 1080
                                                                    **************

consensus_4735#1      GCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAAC 74
consensus_4735#2      GCATGTTGAAAGTGTTATGGTTCCAAATCCATAAAATGGACAACTGTGATTGACTTTAAT 103
consensus_4735#0      GCATGTTGAAAGTGTTATGGTTCCAAATCCATATGCTGCACAACTGTGATTGACTTGAAC 1140
                      *********************************   ** ***************** ** 

consensus_4735#1      TACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTT 134
consensus_4735#2      TACTAGTAGTACAAAAAATAGGTCCAGTGTCAGCCTTTTGCAAAGCAGGTGTTTTTATTT 163
consensus_4735#0      TACTAGTACTACAAAAGATAGCTACAGTGTCAGCCTTTTGCAAAGCAGGTGTTGCTAGTT 1200
                      ******** ******* **** * *****************************  ** **

consensus_4735#1      TTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTA 194
consensus_4735#2      TTGTTCAAAAAAGAAAAACAAGCATGTAGGTATATGTTCCCGATGAACAAAGTATAGTTA 223
consensus_4735#0      TTGTTCAGAATAGAAAAACAAGCATGTATGTATATGTTCCTGCTGAACAAAGTATAGTTA 1260
                      ******* ** ***************** *********** * *****************

consensus_4735#1      TCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCATGCCGTTACGT 254
consensus_4735#2      TCCTTAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 252
consensus_4735#0      TCCTTAAAGTTAATTGGGAT---------------------------------------- 1280
                      ********   **     *                                         

consensus_4735#1      AACGTAT 261
consensus_4735#2      -------
consensus_4735#0      -------