cluster # 477

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Oryza sativa
cluster # 477 cluster # 477 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_477#0 length = 893 sequences # 1

consensus_477#1 length = 201 sequences # 1

consensusID : consensus_477#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 893
fasta sequence

                              [AAACAGAGGGGTAGCAGAGGAGCAACCAATCGCGAGAGAGAAGGAAGGTTGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGACGAGATGGAGAGAGATGAGGTGTGCTGTTCTTGCGCCATGAGGCAGTGCAGGATCTGCCATGAGGAGGAGGAGGAAGGGTGCACCGCCATGGAGTCCCCCTGCGGATGCTCTGGCTCCCTCAAGTACGCGCACAGGGGGTGTGTGCAGAGATGGTGCGATGAGAAGGGGAGCACGCTCTGCGAGATTTCCCTTCAGAATTTCGAACCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTGAGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCGTTGATCGGCGAGCAGGATTACGCCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCAGATCGGTGGCCGTCACGTTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAACAAAATCAACATGCCATTCTTGTCCGGTGAACAAAGAATGAAGTGGTTCTCCTGTAGAAAAGACTGCAAAATTGTATTATTACTGATGGGAAAAGGAAAATAAACATTGTTCATAAGCTTTCCACTATATGTACATGTCCACATTTGTTGCAAAGATGATTACACCAGAGC]

[+] EMBL AK099496             [AAACAGAGGGGTAGCAGAGGAGCAACCAATCGCGAGAGAGAAGGAAGGTTGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGACGAGATGGAGAGAGATGAGGTGTGCTGTTCTTGCGCCATGAGGCAGTGCAGGATCTGCCATGAGGAGGAGGAGGAAGGGTGCACCGCCATGGAGTCCCCCTGCGGATGCTCTGGCTCCCTCAAGTACGCGCACAGGGGGTGTGTGCAGAGATGGTGCGATGAGAAGGGGAGCACGCTCTGCGAGATTTCCCTTCAGAATTTCGAACCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTGAGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCGTTGATCGGCGAGCAGGATTACGCCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCAGATCGGTGGCCGTCACGTTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAACAAAATCAACATGCCATTCTTGTCCGGTGAACAAAGAATGAAGTGGTTCTCCTGTAGAAAAGACTGCAAAATTGTATTATTACTGATGGGAAAAGGAAAATAAACATTGTTCATAAGCTTTCCACTATATGTACATGTCCACATTTGTTGCAAAGATGATTACACCAGAGC]




>consensus_477#0
AAACAGAGGGGTAGCAGAGGAGCAACCAATCGCGAGAGAGAAGGAAGGTTGAGGAAGAGG
AGGAGGAGGAGGAGGAAGAAGAAGACGAGATGGAGAGAGATGAGGTGTGCTGTTCTTGCG
CCATGAGGCAGTGCAGGATCTGCCATGAGGAGGAGGAGGAAGGGTGCACCGCCATGGAGT
CCCCCTGCGGATGCTCTGGCTCCCTCAAGTACGCGCACAGGGGGTGTGTGCAGAGATGGT
GCGATGAGAAGGGGAGCACGCTCTGCGAGATTTCCCTTCAGAATTTCGAACCAGGCTACA
CTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTG
AGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCGTTGATCGGCGAGCAGGATTACG
CCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCAGATCGGTGGCCGTCACGT
TCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACACC
AGTACGCCTTCAGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGT
TCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGC
AGCTGCTCCAGGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAG
AACAAAATCAACATGCCATTCTTGTCCGGTGAACAAAGAATGAAGTGGTTCTCCTGTAGA
AAAGACTGCAAAATTGTATTATTACTGATGGGAAAAGGAAAATAAACATTGTTCATAAGC
TTTCCACTATATGTACATGTCCACATTTGTTGCAAAGATGATTACACCAGAGC

consensusID : consensus_477#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [AGNGNACGTGTGGGTTTGATCCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATNTNGCAGTGACCATNAGGTGAGCCTCTNTTCCCTCTGGAATTNACAATATTTAANGTTGATAGCTGGGAATTTNCACTGTAGATTATAGAACAAGGTGAATGTTGAGTTAGTGTCTGGTACTCTGGTTGGTAGCTAGTG]

[+] EMBL OSS2139A             [AGNGNACGTGTGGGTTTGATCCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATNTNGCAGTGACCATNAGGTGAGCCTCTNTTCCCTCTGGAATTNACAATATTTAANGTTGATAGCTGGGAATTTNCACTGTAGATTATAGAACAAGGTGAATGTTGAGTTAGTGTCTGGTACTCTGGTTGGTAGCTAGTG]




>consensus_477#1
AGNGNACGTGTGGGTTTGATCCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCC
ATNTNGCAGTGACCATNAGGTGAGCCTCTNTTCCCTCTGGAATTNACAATATTTAANGTT
GATAGCTGGGAATTTNCACTGTAGATTATAGAACAAGGTGAATGTTGAGTTAGTGTCTGG
TACTCTGGTTGGTAGCTAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_477#0      AAACAGAGGGGTAGCAGAGGAGCAACCAATCGCGAGAGAGAAGGAAGGTTGAGGAAGAGG 60
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      AGGAGGAGGAGGAGGAAGAAGAAGACGAGATGGAGAGAGATGAGGTGTGCTGTTCTTGCG 120
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      CCATGAGGCAGTGCAGGATCTGCCATGAGGAGGAGGAGGAAGGGTGCACCGCCATGGAGT 180
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      CCCCCTGCGGATGCTCTGGCTCCCTCAAGTACGCGCACAGGGGGTGTGTGCAGAGATGGT 240
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      GCGATGAGAAGGGGAGCACGCTCTGCGAGATTTCCCTTCAGAATTTCGAACCAGGCTACA 300
consensus_477#1      -----------------------------AGNGNACGTGTGGGTTT-GATCCAGGCTACA 30
                                                  *     * *  *  *** ** **********

consensus_477#0      CTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTG 360
consensus_477#1      CTGCTCCTCCCAAGAAAGCTCAACCTGCCCATNTNGCAGTGACCATNAG-GTGAGCCTCT 89
                     ******************************** * *********** ** * ******  

consensus_477#0      AGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCGTTGATCGGCGAGCAGGATTACG 420
consensus_477#1      NTTCCCTCTGG--AATTNACAATATTTA----ANGTTGATAGCTGGGAATTTNCACTGTA 143
                          * * **  **   ** *     *    * *  * *    **  *     * *   

consensus_477#0      CCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCA--GATCGGTGGCCGTCAC 478
consensus_477#1      GATTATAGAACAAGGTGAATGTTGAGT-TAGTGTCTGGTACTCTGGTTGGTAGCTAGTG- 201
                          *    *   * *   *    *        ***** *   * * *** **      

consensus_477#0      GTTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACA 538
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      CCAGTACGCCTTCAGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCC 598
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      GTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCT 658
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      GCAGCTGCTCCAGGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGA 718
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      AGAACAAAATCAACATGCCATTCTTGTCCGGTGAACAAAGAATGAAGTGGTTCTCCTGTA 778
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      GAAAAGACTGCAAAATTGTATTATTACTGATGGGAAAAGGAAAATAAACATTGTTCATAA 838
consensus_477#1      ------------------------------------------------------------
                                                                                 

consensus_477#0      GCTTTCCACTATATGTACATGTCCACATTTGTTGCAAAGATGATTACACCAGAGC 893
consensus_477#1      -------------------------------------------------------