cluster # 4776

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Oryza sativa
cluster # 4776 cluster # 4776 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4776#0 length = 729 sequences # 2

consensus_4776#1 length = 541 sequences # 1

consensusID : consensus_4776#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 729
fasta sequence

                              [GAGCAAGGCAAAGCAGAGCCGTCAGTTGCGGTCAGTTTCCCTGTCACCTCCAGGCGTCCAGGAACATACACACACATCAAGGTAGTGGTGGCCATGGCCGCGTGCAGGTGCAGCAGCCGCCTCTCCCTGCAGCTGCCTCCTCCGTGCTTGCTCATCGTCCTCGTCGCCGCGGCGGCGATGGTGGCGGCGGCGGCGACAGGGGCGAGGGCGGCGTGGGTGGACTACCCGTCGGGGGTGCCGTGCGGGGAGACGATCCCGGTGGAGCAGTGCGACCCGGGCGACGCGGCGGCGAACAGCGCGTGCATGGACGTGTGCCA-CTACGGCGGATGCCGGCGCGGCGGCGAGTGCGTCTCCCTCGGCTTCGGCCGCGGCCGGGGATGCCA-CTGCAAGTGCTAGCAG-CTGAACTGAGCTGAGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAAGCAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCT-T-TTTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCTGCCTCTCTGTACAAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTTTGTTTTAAAAAAAAAA]

[+] EMBL AK107070             [GAGCAAGGCAAAGCAGAGCCGTCAGTTGCGGTCAGTTTCCCTGTCACCTCCAGGCGTCCAGGAACATACACACACATCAAGGTAGTGGTGGCCATGGCCGCGTGCAGGTGCAGCAGCCGCCTCTCCCTGCAGCTGCCTCCTCCGTGCTTGCTCATCGTCCTCGTCGCCGCGGCGGCGATGGTGGCGGCGGCGGCGACAGGGGCGAGGGCGGCGTGGGTGGACTACCCGTCGGGGGTGCCGTGCGGGGAGACGATCCCGGTGGAGCAGTGCGACCCGGGCGACGCGGCGGCGAACAGCGCGTGCATGGACGTGTGCCA CTACGGCGGATGCCGGCGCGGCGGCGAGTGCGTCTCCCTCGGCTTCGGCCGCGGCCGGGGATGCCA CTGCAAGTGCTAGCAG CTGAACTGAGCTGAGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAAGCAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCT T TTTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCTGCCTCTCTGTACAAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTTT               ]
[+] EMBL BI813005             [                                                                                                                                                                                                                   ctTGGGTTGACTAACCCTCGGGGTTCCCCT C GGGAGACGATCCC GTGGA CAGTGCGACCC GGCGAC C GCGGCGAACAGCGCGTGCATGGACGTGTGCCACCTACGGCGGATGCCGGCGCGGCGGCGAGTGCGTCTCCCTCGGCTTCGGCC CGGCCGGGGATGCCACCTGCAAGTGCTAGCAGTCTGAACTGAGCTGAGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCCAAGTAGTAGAAGCCGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTCTCTTTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCTGCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTTTGTTTTAAAAAAAAAA]




>consensus_4776#0
GAGCAAGGCAAAGCAGAGCCGTCAGTTGCGGTCAGTTTCCCTGTCACCTCCAGGCGTCCA
GGAACATACACACACATCAAGGTAGTGGTGGCCATGGCCGCGTGCAGGTGCAGCAGCCGC
CTCTCCCTGCAGCTGCCTCCTCCGTGCTTGCTCATCGTCCTCGTCGCCGCGGCGGCGATG
GTGGCGGCGGCGGCGACAGGGGCGAGGGCGGCGTGGGTGGACTACCCGTCGGGGGTGCCG
TGCGGGGAGACGATCCCGGTGGAGCAGTGCGACCCGGGCGACGCGGCGGCGAACAGCGCG
TGCATGGACGTGTGCCACTACGGCGGATGCCGGCGCGGCGGCGAGTGCGTCTCCCTCGGC
TTCGGCCGCGGCCGGGGATGCCACTGCAAGTGCTAGCAGCTGAACTGAGCTGAGCTGATC
TCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAAGCAGTAATT
AGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGT
CCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTTTTGTTCCTCTGTTTTTTCCTGA
TCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCTGCCTCTC
TGTACAAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTTTGTTTTA
AAAAAAAAA

consensusID : consensus_4776#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [GTGCGCGCGCGACGGGCGAGGCGGCTTGGGGGACTACCTCGGGGTCCTCGGGGAGACGATCCCGTGGACAGTCGACCCGGCGACGCGCGCGAACAAGCAGCGTGCATGGACGCTGTGCCACTACGGCGGATGCCGGCGCGGCGGCGATGTGCGTCTCCCTCGGCTTCGGCCCCAGGCACGGGGATGCCACTGCAAGTGCTAGCACTGAACTGAGCTGATGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAACAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTTCTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTGGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCAGCACTGCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTCCCTTTTGTTTTCTTCCAAAAAAAAAA]

[+] EMBL BI801820             [GTGCGCGCGCGACGGGCGAGGCGGCTTGGGGGACTACCTCGGGGTCCTCGGGGAGACGATCCCGTGGACAGTCGACCCGGCGACGCGCGCGAACAAGCAGCGTGCATGGACGCTGTGCCACTACGGCGGATGCCGGCGCGGCGGCGATGTGCGTCTCCCTCGGCTTCGGCCCCAGGCACGGGGATGCCACTGCAAGTGCTAGCACTGAACTGAGCTGATGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAACAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTTCTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTGGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCAGCACTGCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTCCCTTTTGTTTTCTTCCAAAAAAAAAA]




>consensus_4776#1
GTGCGCGCGCGACGGGCGAGGCGGCTTGGGGGACTACCTCGGGGTCCTCGGGGAGACGAT
CCCGTGGACAGTCGACCCGGCGACGCGCGCGAACAAGCAGCGTGCATGGACGCTGTGCCA
CTACGGCGGATGCCGGCGCGGCGGCGATGTGCGTCTCCCTCGGCTTCGGCCCCAGGCACG
GGGATGCCACTGCAAGTGCTAGCACTGAACTGAGCTGATGCTGATCTCTGATCTGAACTG
AACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAACAGTAATTAGGAGAGAATAAATT
AATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGC
CTTGCTAGTTTTCCCGCCCTTTTCTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTGGC
ATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCAGCACTGCCTCTCTGTACCAAAGCCT
AAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTCCCTTTTGTTTTCTTCCAAAAAAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4776#0      GAGCAAGGCAAAGCAGAGCCGTCAGTTGCGGTCAGTTTCCCTGTCACCTCCAGGCGTCCA 60
consensus_4776#1      ------------------------------------------------------------
                                                                                  

consensus_4776#0      GGAACATACACACACATCAAGGTAGTGGTGGCCATGGCCGCGTGCAGGTGCAGCAGCCGC 120
consensus_4776#1      ------------------------------------------------------------
                                                                                  

consensus_4776#0      CTCTCCCTGCAGCTGCCTCCTCCGTGCTTGCTCATCGTCCTCGTCGCCGCGGCGGCGATG 180
consensus_4776#1      ------------------------------------------------------------
                                                                                  

consensus_4776#0      GTGGCGGCGGCGGCGACAGGGGCGAGGGCGGCGTGGGTGGACTACCCGTCGGGGGTGCCG 240
consensus_4776#1      ------GTGCGCGCGCGACGGGCGAGG-CGGCTTGGG-GGACTACCTC---GGGGTCCT- 48
                            * *   ***  * ******** **** **** ********     ***** *  

consensus_4776#0      TGCGGGGAGACGATCCCGGTGGAGCAGTGCGACCCGGGCGACGCGGCGGCGAACAGCGCG 300
consensus_4776#1      --CGGGGAGACGATCCCG-TGGA-CAGT-CGACCCGG-CGACGCGCGCGAACAAGCAGCG 102
                        **************** **** **** ******** *******   *   *    ***

consensus_4776#0      TGCATGGACG-TGTGCCACTACGGCGGATGCCGGCGCGGCGGCGA-GTGCGTCTCCCTCG 358
consensus_4776#1      TGCATGGACGCTGTGCCACTACGGCGGATGCCGGCGCGGCGGCGATGTGCGTCTCCCTCG 162
                      ********** ********************************** **************

consensus_4776#0      GCTTCGGCCGCGGCC--GGGGATGCCACTGCAAGTGCTAGCAGCTGAACTGAGCTGA-GC 415
consensus_4776#1      GCTTCGGCCCCAGGCACGGGGATGCCACTGCAAGTGCTAGCA-CTGAACTGAGCTGATGC 221
                      ********* * * *  ************************* ************** **

consensus_4776#0      TGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAAGCAG 475
consensus_4776#1      TGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAA-CAG 280
                      ******************************************************** ***

consensus_4776#0      TAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCT 535
consensus_4776#1      TAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCT 340
                      ************************************************************

consensus_4776#0      ACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTT-TTGTTCCTCTGTTTTT 594
consensus_4776#1      ACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTTCTTGTTCCTCTGTTTTT 400
                      ******************************************* ****************

consensus_4776#0      TCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCC-GCGCT 653
consensus_4776#1      TCCTGATCTTCGTGTTTGGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCAGCACT 460
                      ***************** ************************************ ** **

consensus_4776#0      GCCTCTCTGTACAAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTT 713
consensus_4776#1      GCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTCCCTTT 520
                      ************ ***************************************** *****

consensus_4776#0      TGTTTT-----AAAAAAAAAA 729
consensus_4776#1      TGTTTTCTTCCAAAAAAAAAA 541
                      ******     **********