cluster # 4778

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Oryza sativa
cluster # 4778 cluster # 4778 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4778#0 length = 1054 sequences # 2

consensus_4778#1 length = 177 sequences # 1

consensusID : consensus_4778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1054
fasta sequence

                              [GCGCGCTTTTCGGCGTGCCGGATGAGGCGCGGGACGCCGACCGTTTCCCCTCCGCCATAGCCCGGCGGTTCGTCTCGGCCTTCCGGAGCAGCGAGCTTCTCGCCGTGCGGAGCTGCGTGGAGTTCGAGCCCGAGTCGGTGCCTCTCCTGTCGAACATCTTCGGCAAGCCGGTCGTCCCCATCGGCCTTCTCCCGCCGCCGCAGGTTGACGGCGACGGCGACGGCGACACAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCGAGGCGCCGCTGACCGCGGAGCAGCGGCGCGAGCTGGCGCTCGGGCTGGAGCTCTCCGGCGCGCCCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCGGCGACGACGACGGCGGCCTCCTGCCTCCGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGAGTGGGTGCCCCAGCTCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCGTCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACTAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCA-GGGATGGCGAGCACGGCGGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCCGGGCCGCCGTGGTGGATGAAGAGAGCA-AGAAAGCGCTCGCCGCCAACGCCGGGAAGATGGGGGAGTGGTGCCGACACGGAGTGTCACGAGAGGTGCATCGACGCTTTCATTCAGCAGCTCAGGTCCTATACAACGACAAGGACTGGTTATTAGTACGTACCTCCACTTGGACACATCATCCCTGCCTAAGATTCGCATGTCCGTTTTATTTGTTGTTCCATCAAAGATTTGATTCGTTTAGTATATTCACCATGTTTTACTATGTACGGATCAATGTTGCAGTGAATTGAAACACTTCTTTTGCAATAAATTACCCATATATTATGGATATTATGGAAAAAAAAAA]

[+] EMBL CB684577             [GCGCGCTTTTCGGCGTGCCGGATGAGGCGCGGGACGCCGACCGTTTCCCCTCCGCCATAGCCCGGCGGTTCGTCTCGGCCTTCCGGAGCAGCGAGCTTCTCGCCGTGCGGAGCTGCGTGGAGTTCGAGCCCGAGTCGGTGCCTCTCCTGTCGAACATCTTCGGCAAGCCGGTCGTCCCCATCGGCCTTCTCCCGCCGCCGCAGGTTGACGGCGACGGCGACGGCGACACAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCGAGGCGCCGCTGACCGCGGAGCAGCGGCGCGAGCTGGCGCTCGGGCTGGAGCTCTCCGGCGCGCCCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCGGCGACGACGACGGCGGCCTCCTGCCTCCGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGAGTGGGTGCCCCAGCTCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCGTCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACTAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCA GGGATGGCGAGCACGGCGGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCCGGGCCGCCGTGGTGGATGAAGAGAGCA AGAAAGCGCTCGCCGC                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI811822             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCGTCATCGAGGGGCT CGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGTTCACGAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTTCAGGTGGCCACGGGATGGCGAGCACGGCAGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCC GGCC CCGTGGTGGATGAAGAGAGCACAGAAGGCGCTCGCCGCCAACGCCGGGAAGATGGGGGAGTGGTGCCGACACGGAGTGTCACGAGAGGTGCATCGACGCTTTCATTCAGCAGCTCAGGTCCTATACAACGACAAGGACTGGTTATTAGTACGTACCTCCACTTGGACACATCATCCCTGCCTAAGATTCGCATGTCCGTTTTATTTGTTGTTCCATCAAAGATTTGATTCGTTTAGTATATTCACCATGTTTTACTATGTACGGATCAATGTTGCAGTGAATTGAAACACTTCTTTTGCAATAAATTACCCATATATTATGGATATTATGGAAAAAAAAAA]




>consensus_4778#0
GCGCGCTTTTCGGCGTGCCGGATGAGGCGCGGGACGCCGACCGTTTCCCCTCCGCCATAG
CCCGGCGGTTCGTCTCGGCCTTCCGGAGCAGCGAGCTTCTCGCCGTGCGGAGCTGCGTGG
AGTTCGAGCCCGAGTCGGTGCCTCTCCTGTCGAACATCTTCGGCAAGCCGGTCGTCCCCA
TCGGCCTTCTCCCGCCGCCGCAGGTTGACGGCGACGGCGACGGCGACACAGCTCTCATGT
CCTCGTGGCTCGACAGGCAGCCGCCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCGAGG
CGCCGCTGACCGCGGAGCAGCGGCGCGAGCTGGCGCTCGGGCTGGAGCTCTCCGGCGCGC
CCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCGGCGACGACGACGGCGGCCTCCTGCCTC
CGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGAGTGGGTGCCCCAGC
TCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCG
TCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGT
TCACTAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCAGGGATG
GCGAGCACGGCGGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCCGGGCCGCCGTGG
TGGATGAAGAGAGCAAGAAAGCGCTCGCCGCCAACGCCGGGAAGATGGGGGAGTGGTGCC
GACACGGAGTGTCACGAGAGGTGCATCGACGCTTTCATTCAGCAGCTCAGGTCCTATACA
ACGACAAGGACTGGTTATTAGTACGTACCTCCACTTGGACACATCATCCCTGCCTAAGAT
TCGCATGTCCGTTTTATTTGTTGTTCCATCAAAGATTTGATTCGTTTAGTATATTCACCA
TGTTTTACTATGTACGGATCAATGTTGCAGTGAATTGAAACACTTCTTTTGCAATAAATT
ACCCATATATTATGGATATTATGGAAAAAAAAAA

consensusID : consensus_4778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [CAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCAGGCCCGCTGACCGCGACCGAGCACGGCTGGCCCTCGGCTGGAGCTCTCCGGCCCCCTTCCTCTGGCCCTGAGGAAGCCTCACGGCGCGACGAGACGGCGCCTCCTCCGG]

[+] EMBL AA749993             [CAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCAGGCCCGCTGACCGCGACCGAGCACGGCTGGCCCTCGGCTGGAGCTCTCCGGCCCCCTTCCTCTGGCCCTGAGGAAGCCTCACGGCGCGACGAGACGGCGCCTCCTCCGG]




>consensus_4778#1
CAGCTCTCATGTCCTCGTGGCTCGACAGGCAGCCGCCAAGTCCGTCGTCTACGTCGCGCT
CGGGAGCAGGCCCGCTGACCGCGACCGAGCACGGCTGGCCCTCGGCTGGAGCTCTCCGGC
CCCCTTCCTCTGGCCCTGAGGAAGCCTCACGGCGCGACGAGACGGCGCCTCCTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4778#0      GCGCGCTTTTCGGCGTGCCGGATGAGGCGCGGGACGCCGACCGTTTCCCCTCCGCCATAG 60
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      CCCGGCGGTTCGTCTCGGCCTTCCGGAGCAGCGAGCTTCTCGCCGTGCGGAGCTGCGTGG 120
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      AGTTCGAGCCCGAGTCGGTGCCTCTCCTGTCGAACATCTTCGGCAAGCCGGTCGTCCCCA 180
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      TCGGCCTTCTCCCGCCGCCGCAGGTTGACGGCGACGGCGACGGCGACACAGCTCTCATGT 240
consensus_4778#1      ------------------------------------------------CAGCTCTCATGT 12
                                                                      ************

consensus_4778#0      CCTCGTGGCTCGACAGGCAGCCGCCCAAGTCCGTCGTCTACGTCGCGCTCGGGAGCGAGG 300
consensus_4778#1      CCTCGTGGCTCGACAGGCAGCCGCC-AAGTCCGTCGTCTACGTCGCGCTCGGGAGC-AGG 70
                      ************************* ****************************** ***

consensus_4778#0      CGCCGCTGACCGCGGAGCAGCGGCGCGAGCTGGCGCTCGGGCTGGAGCTCTCCGGCGCGC 360
consensus_4778#1      C-CCGCTGACCGCGACCGAGCAC----GGCTGGCCCTCGG-CTGGAGCTCTCCGGCC--C 122
                      * ************    ***       ****** ***** ***************   *

consensus_4778#0      CCTTCCTCTGGGCCCTGAGGAAGCCTCACGGCGGCGACGACGACGGCGGCCTCCTGCCTC 420
consensus_4778#1      CCTTCCTCTGG-CCCTGAGGAAGCCTCACGGCG-CGACGA-GACGGCGCCT-----CCTC 174
                      *********** ********************* ****** ******* *      ****

consensus_4778#0      CGGGATTCGAGGAGCGGACGCGCGGGCGCGGGATGGTGAAGACGGAGTGGGTGCCCCAGC 480
consensus_4778#1      CGG--------------------------------------------------------- 177
                      ***                                                         

consensus_4778#0      TCAAGATCCTGGCGCACGCCGCCGTGGGCGCCTTCCTGACGCACTGCGGCCACAGCTCCG 540
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      TCATCGAGGGGCTCCGGTTCGGCCATCCTCTCGTCATGCTGCCACTGTTCCTCGACCAGT 600
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      TCACTAACGCGAGCTACTTGGAAGGGGCGAGAGGGGTTGGGGTGCAGGTGGCCAGGGATG 660
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      GCGAGCACGGCGGCGCCTTCGACCGGGACGGCGTCGCCGCAGCCGTCCGGGCCGCCGTGG 720
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      TGGATGAAGAGAGCAAGAAAGCGCTCGCCGCCAACGCCGGGAAGATGGGGGAGTGGTGCC 780
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      GACACGGAGTGTCACGAGAGGTGCATCGACGCTTTCATTCAGCAGCTCAGGTCCTATACA 840
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      ACGACAAGGACTGGTTATTAGTACGTACCTCCACTTGGACACATCATCCCTGCCTAAGAT 900
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      TCGCATGTCCGTTTTATTTGTTGTTCCATCAAAGATTTGATTCGTTTAGTATATTCACCA 960
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      TGTTTTACTATGTACGGATCAATGTTGCAGTGAATTGAAACACTTCTTTTGCAATAAATT 1020
consensus_4778#1      ------------------------------------------------------------
                                                                                  

consensus_4778#0      ACCCATATATTATGGATATTATGGAAAAAAAAAA 1054
consensus_4778#1      ----------------------------------