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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[AGTACGTTGTCACACTGTCACTATGCNCGTCTTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCAGCCGCGAAGCGTGGGCTGATTCCTCTGTTGATANCCAAGCTAAGGGGGAAGAAAGTCGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAANCTGCTACTCCAGGTTGTATTTGTGGCGGTAGTANCTGTCTCACTTCNTTACTTGTCNAACAGTTGAAGATTGATGCCNTTGTGTTCNATTTTGANCNATGTCCNAAACCACNGCTGTNGATTGTATTGATCATTTCNTTTATGTTTCNTATATTATATCCACNGTNGCGCNAGGTGTTGTGCTTTTGCATCCNAGCCATCNTGTCTTAACTTCNTCCTGGACTGTTGAAATTGACTTGANATGATACCNTATCCTCCTTGCATTGTGTNCATCTTTTGCCGCNAGCAATGTTATTCATTTTCCCAAAATTTAANAAAGGAACTGATNTNGGAATNTTCNTCCATGCCTCCAAAAAAAAGGTTACCCACNN]
[+] EMBL BE229696 [AGTACGTTGTCACACTGTCACTATGCNCGTCTTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCAGCCGCGAAGCGTGGGCTGATTCCTCTGTTGATANCCAAGCTAAGGGGGAAGAAAGTCGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAANCTGCTACTCCAGGTTGTATTTGTGGCGGTAGTANCTGTCTCACTTCNTTACTTGTCNAACAGTTGAAGATTGATGCCNTTGTGTTCNATTTTGANCNATGTCCNAAACCACNGCTGTNGATTGTATTGATCATTTCNTTTATGTTTCNTATATTATATCCACNGTNGCGCNAGGTGTTGTGCTTTTGCATCCNAGCCATCNTGTCTTAACTTCNTCCTGGACTGTTGAAATTGACTTGANATGATACCNTATCCTCCTTGCATTGTGTNCATCTTTTGCCGCNAGCAATGTTATTCATTTTCCCAAAATTTAANAAAGGAACTGATNTNGGAATNTTCNTCCATGCCTCCAAAAAAAAGGTTACCCACNN]
consensusID : consensus_4789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 558 fasta sequence
[TCCTGATGCTAATCAAGGATTTGACATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAATTCTAGCCGAAGTTATCTTGAAGGTGATACATTATTTGTGTCACCTTTGCTACAAACGTTCAAGGAAGATGGCGTGGTCAAGTCATATACAGAAGTATTGCTTGTTCCCTTGACAACTCCTGATTTCAGCATGCCATACAATGTCATCTCCTTCACTTGCGCCGTGTTAGCAATTTATTTTGGTTCAGTACTTAATGCTTTGAGACGTCGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCACCCGCGAAGCGTGGGCTGATTCCTCTGTTGATAGCCAAGATAAGGGGGAAGAAGGTGGACCCGCCACCACAAGGATCTTCTCTTACATGTTTGTTGTCAACAAAGCTGGTCCTCAAGGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTATTTGTCAGACAGTTGAGGATTGATGCCATTGTGTCCAATTTTGAGCAATGTCCAAAACCACGCCTGTAGATTGTATTGATCATTTCGTTTATGTATCAA]
[-] EMBL CB648822 [TCCTGATGCTAATCAAGGATTTGACATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAATTCTAGCCGAAGTTATCTTGAAGGTGATACATTATTTGTGTCACCTTTGCTACAAACGTTCAAGGAAGATGGCGTGGTCAAGTCATATACAGAAGTATTGCTTGTTCCCTTGACAACTCCTGATTTCAGCATGCCATACAATGTCATCTCCTTCACTTGCGCCGTGTTAGCAATTTATTTTGGTTCAGTACTTAATGCTTTGAGACGTCGAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCACCCGCGAAGCGTGGGCTGATTCCTCTGTTGATAGCCAAGATAAGGGGGAAGAAGGTGGACCCGCCACCACAAGGATCTTCTCTTACATGTTTGTTGTCAACAAAGCTGGTCCTCAAGGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTATTTGTCAGACAGTTGAGGATTGATGCCATTGTGTCCAATTTTGAGCAATGTCCAAAACCACGCCT ]
[-] EMBL CB637631 [ CCATACAATGTCATCACCTTCACTTGCACCGTTTTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGCAGAAGAGAGGGAATTGAAAAAAGCAGCCGTGAAGCGTGGGTTGATTCCTCTGTTGATAGCCAAGCTAAGGGGGAAGAAGGTCGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAAGCTGCTACTCAAGGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTACTTGTCAAACAGTTGAGGATTGATGCCATTGTGTACAATTTTGAGCAATGTCCAAAACCACGGCTGTAGATTGTATTGATCATTTCGTTTATGTATCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4789#0 ------------------------------------------------------------
consensus_4789#1 TCCTGATGCTAATCAAGGATTTGACATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAA 60
consensus_4789#0 ------------------------------------------------------------
consensus_4789#1 TTCTAGCCGAAGTTATCTTGAAGGTGATACATTATTTGTGTCACCTTTGCTACAAACGTT 120
consensus_4789#0 ------------------------------------------------------------
consensus_4789#1 CAAGGAAGATGGCGTGGTCAAGTCATATACAGAAGTATTGCTTGTTCCCTTGACAACTCC 180
consensus_4789#0 --------------AGTACGTTGTCA-CACTGTCACTATGCNCGTCTTAGCACTTTATTT 45
consensus_4789#1 TGATTTCAGCATGCCATACAATGTCATCTCCTTCACTTGCGCCGTGTTAGCAATTTATTT 240
*** ***** * * ***** *** ****** *******
consensus_4789#0 TGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTGAAAAA 105
consensus_4789#1 TGGTTCAGTACTTAATGCTTTGAGACGTCGAATTGGTGAAGAAGAGAGGGAATTGAAAAA 300
******* ******************* ********************************
consensus_4789#0 AGCAGCCGCGAAGCGTGGGCTGATTCCTCTGTTGATANCCAAGCTAAGGGGGAAGAAAGT 165
consensus_4789#1 AGCACCCGCGAAGCGTGGGCTGATTCCTCTGTTGATAGCCAAGATAAGGGGGAAGAAGGT 360
**** ******************************** ***** ************* **
consensus_4789#0 CGACCCACCACCACAAGGATCTTCACCTACATCTCTGTTGTCAACAAANCTGCTACTCCA 225
consensus_4789#1 GGACCCGCCACCACAAGGATCTTCTCTTACATGTTTGTTGTCAACAAAGCTGGTCCTCAA 420
***** ***************** * ***** * ************* *** * *** *
consensus_4789#0 GGTTGTATTTGTGGCGGTAGTANCTGTCTCACTTCNTTACTTGTCNAACAGTTGAAGATT 285
consensus_4789#1 GGTTGTATTTGTGGCGGTAGTAGCTGTCTCACTTCATTATTTGTCAGACAGTTGAGGATT 480
********************** ************ *** ***** ******** ****
consensus_4789#0 GATGCCNTTGTGTTCNATTTTGANCNATGTCCNAAACCACNGCTGTNGATTGTATTGATC 345
consensus_4789#1 GATGCCATTGTGTCCAATTTTGAGCAATGTCCAAAACCACGCCTGTAGATTGTATTGATC 540
****** ****** * ******* * ****** ******* **** *************
consensus_4789#0 ATTTCNTTTATGTTTCNTATATTATATCCACNGTNGCGCNAGGTGTTGTGCTTTTGCATC 405
consensus_4789#1 ATTTCGTTTATGTATCAA------------------------------------------ 558
***** ******* **
consensus_4789#0 CNAGCCATCNTGTCTTAACTTCNTCCTGGACTGTTGAAATTGACTTGANATGATACCNTA 465
consensus_4789#1 ------------------------------------------------------------
consensus_4789#0 TCCTCCTTGCATTGTGTNCATCTTTTGCCGCNAGCAATGTTATTCATTTTCCCAAAATTT 525
consensus_4789#1 ------------------------------------------------------------
consensus_4789#0 AANAAAGGAACTGATNTNGGAATNTTCNTCCATGCCTCCAAAAAAAAGGTTACCCACNN 584
consensus_4789#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||