cluster # 4812

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Oryza sativa
cluster # 4812 cluster # 4812 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4812#0 length = 691 sequences # 1

consensus_4812#1 length = 459 sequences # 1
consensus_4812#2 length = 224 sequences # 1

consensusID : consensus_4812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [GCAATGAAGCTCTATACTAGGCTAACAGATATCTGCCCGCATGGATGCAACCCCTATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTGCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGCTGCTCAAATGTTACTGAAGGACTTTGAAAAGGCATGTGATGCGTTTTTTGATGGACTCAAATTGGATCCAGCAAGTGATGAGATTGCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAAGTGGGTATTGGATTGCCATCTTCTCAGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACAACTGAACAAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAAGTCGGTGGGTTGCCTCGGAGGTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATCAATATGAATGTGAAAAATGGTAGAATGAAAGTAGCTGGCTCACAGGAAGACTCCGGTTTAGATCCTGAACTAATACGGGCAGACAGGCACCTTTGTACATTCTGTGTTACTACCTTCTTTAATCTTGACGTTGTATAGCCAAAAAAA]

[+] EMBL AU075568             [GCAATGAAGCTCTATACTAGGCTAACAGATATCTGCCCGCATGGATGCAACCCCTATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTGCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGCTGCTCAAATGTTACTGAAGGACTTTGAAAAGGCATGTGATGCGTTTTTTGATGGACTCAAATTGGATCCAGCAAGTGATGAGATTGCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAAGTGGGTATTGGATTGCCATCTTCTCAGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACAACTGAACAAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAAGTCGGTGGGTTGCCTCGGAGGTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATCAATATGAATGTGAAAAATGGTAGAATGAAAGTAGCTGGCTCACAGGAAGACTCCGGTTTAGATCCTGAACTAATACGGGCAGACAGGCACCTTTGTACATTCTGTGTTACTACCTTCTTTAATCTTGACGTTGTATAGCCAAAAAAA]




>consensus_4812#0
GCAATGAAGCTCTATACTAGGCTAACAGATATCTGCCCGCATGGATGCAACCCCTATTCT
CAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTGCAGGATGCTC
AAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGCTGCTC
AAATGTTACTGAAGGACTTTGAAAAGGCATGTGATGCGTTTTTTGATGGACTCAAATTGG
ATCCAGCAAGTGATGAGATTGCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATAT
CTCATGCTGCCAAAGTGGGTATTGGATTGCCATCTTCTCAGAAGAAAATCATAAGATAAT
CTGCCAGCGTAGCGCTGTTGCAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAA
TAGTTCCTAAACAACTGAACAAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAA
GTCGGTGGGTTGCCTCGGAGGTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAG
CATCAATATGAATGTGAAAAATGGTAGAATGAAAGTAGCTGGCTCACAGGAAGACTCCGG
TTTAGATCCTGAACTAATACGGGCAGACAGGCACCTTTGTACATTCTGTGTTACTACCTT
CTTTAATCTTGACGTTGTATAGCCAAAAAAA

consensusID : consensus_4812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [AGAATATCCTGCCCCGCATGGATGGCCAACCCCCCAGTTCTCCAAATAGGAACCCTTTTGCCTTGGGGCTTAAATGATGTGCTTCCACGGGGTCAAAATCATTTCAGGATGCTCAAATGTTGCAGGTTGATGCACTTCTGACTGGTCGAAGCAATGCTATCTGGAAGGTGCTGCTCCAATGTTACTGAAGGACTTTGAAAAGGCATGTGACGCGGTTTTTTGATGGACTCCAATTGGATCCACGCAAGTGATGAGATTCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAGTGGGTATTGGATTGCCATCTTCTCTGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACACTGAACAAGCTCAACAACTCTTACCAAAAAA]

[+] EMBL BI800871             [AGAATATCCTGCCCCGCATGGATGGCCAACCCCCCAGTTCTCCAAATAGGAACCCTTTTGCCTTGGGGCTTAAATGATGTGCTTCCACGGGGTCAAAATCATTTCAGGATGCTCAAATGTTGCAGGTTGATGCACTTCTGACTGGTCGAAGCAATGCTATCTGGAAGGTGCTGCTCCAATGTTACTGAAGGACTTTGAAAAGGCATGTGACGCGGTTTTTTGATGGACTCCAATTGGATCCACGCAAGTGATGAGATTCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAGTGGGTATTGGATTGCCATCTTCTCTGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTGCAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACACTGAACAAGCTCAACAACTCTTACCAAAAAA]




>consensus_4812#1
AGAATATCCTGCCCCGCATGGATGGCCAACCCCCCAGTTCTCCAAATAGGAACCCTTTTG
CCTTGGGGCTTAAATGATGTGCTTCCACGGGGTCAAAATCATTTCAGGATGCTCAAATGT
TGCAGGTTGATGCACTTCTGACTGGTCGAAGCAATGCTATCTGGAAGGTGCTGCTCCAAT
GTTACTGAAGGACTTTGAAAAGGCATGTGACGCGGTTTTTTGATGGACTCCAATTGGATC
CACGCAAGTGATGAGATTCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTC
ATGCTGCCAAGTGGGTATTGGATTGCCATCTTCTCTGAAGAAAATCATAAGATAATCTGC
CAGCGTAGCGCTGTTGCAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTT
CCTAAACACTGAACAAGCTCAACAACTCTTACCAAAAAA

consensusID : consensus_4812#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [ACTAGGCTAACAGATATCTGCCCGCATGATGCAACCCCATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTTCAGGATGCTCAAATTTGCGTCAATGCATTTCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGTCTGCTCAAATGTTACTGAAGGACTTGAAAGGCCAAG]

[+] EMBL AA750104             [ACTAGGCTAACAGATATCTGCCCGCATGATGCAACCCCATTCTCAAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTTCAGGATGCTCAAATTTGCGTCAATGCATTTCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTGGAAGGTGTCTGCTCAAATGTTACTGAAGGACTTGAAAGGCCAAG]




>consensus_4812#2
ACTAGGCTAACAGATATCTGCCCGCATGATGCAACCCCATTCTCAAATAGGAGCCTTTGC
TGGCTTAAGATGGGTGCAGGGGTCAATGCATTTCAGGATGCTCAAATTTGCGTCAATGCA
TTTCAGGATGCTCAAATTTGCAGGTTGATGCATTCTGACTGGTCGAAGGCATGCTATCTG
GAAGGTGTCTGCTCAAATGTTACTGAAGGACTTGAAAGGCCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4812#0      GCAATGAAGCTCTATACTAGGCTAACAGATATCTGCCCGCATGGATG--CAACCCCT--A 56
consensus_4812#1      -----------------------AGAATATCCTGCCCCGCATGGATGGCCAACCCCCCAG 37
consensus_4812#2      ---------------ACTAGGCTAACAGATATCTGCCCGCATG-ATG--CAACCCC---A 39
                                             *  * **     ******** ***  *******    

consensus_4812#0      TTCTC-AAATAGGAGCC--T-TTGCT--------GGCTTAAGAT---GGGTGCA-----G 96
consensus_4812#1      TTCTCCAAATAGGAACCCTT-TTGCCTTG----GGGCTTAAATG---ATGTGCTTCCACG 89
consensus_4812#2      TTCTC-AAATAGGAGCCTTTGCTGGCTTAAGATGGGTGCAGGGGTCAATGCATTTCAGGA 98
                      ***** ******** **  *  **          **   *         *          

consensus_4812#0      GGGTCAATG-----------CATTGCAGGATGCTCAAAT-TTGCAGGTTGATGCA-TTCT 143
consensus_4812#1      GGGTCAAAAT----------CATTTCAGGATGCTCAAATGTTGCAGGTTGATGCACTTCT 139
consensus_4812#2      TGCTCAAATTTGCGTCAATGCATTTCAGGATGCTCAAAT-TTGCAGGTTGATGCA-TTCT 156
                       * ****             **** ************** *************** ****

consensus_4812#0      GACTGGTCGAAGGCATGCTATCTGGAAGGTG-CTGCTCAAATGTTACTGAAGGACTTTGA 202
consensus_4812#1      GACTGGTCGAAGCAATGCTATCTGGAAGGTG-CTGCTCCAATGTTACTGAAGGACTTTGA 198
consensus_4812#2      GACTGGTCGAAGGCATGCTATCTGGAAGGTGTCTGCTCAAATGTTACTGAAGGACTT-GA 215
                      ************  ***************** ****** ****************** **

consensus_4812#0      AAAGGCATGTGATGCG-TTTTTTGATGGACTCAAATTGGATCCA-GCAAGTGATGAGATT 260
consensus_4812#1      AAAGGCATGTGACGCGGTTTTTTGATGGACTCCAATTGGATCCACGCAAGTGATGAGATT 258
consensus_4812#2      AAGGCCAAG--------------------------------------------------- 224
                      ** * ** *                                                   

consensus_4812#0      GCAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAAAGTGGGT 320
consensus_4812#1      -CAGAAGCATTAAGGAAATCTTTCGAATCCTTGAAGATATCTCATGCTGCCAA-GTGGGT 316
consensus_4812#2      ------------------------------------------------------------
                                                                                  

consensus_4812#0      ATTGGATTGCCATCTTCTCAGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTG 380
consensus_4812#1      ATTGGATTGCCATCTTCTCTGAAGAAAATCATAAGATAATCTGCCAGCGTAGCGCTGTTG 376
consensus_4812#2      ------------------------------------------------------------
                                                                                  

consensus_4812#0      CAAAGGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACAACTGAAC 440
consensus_4812#1      CAA-GGCCGTTTTGTGAAATACCCCACCTGGTCTTGTAAATAGTTCCTAAACA-CTGAAC 434
consensus_4812#2      ------------------------------------------------------------
                                                                                  

consensus_4812#0      AAGCTCAACGACTCTTACCAAAGTTTCGTCTCTGAAGAAAGTCGGTGGGTTGCCTCGGAG 500
consensus_4812#1      AAGCTCAACAACTCTTACCAAAAAA----------------------------------- 459
consensus_4812#2      ------------------------------------------------------------
                                                                                  

consensus_4812#0      GTAAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATCAATATGAATGTGAAAA 560
consensus_4812#1      ------------------------------------------------------------
consensus_4812#2      ------------------------------------------------------------
                                                                                  

consensus_4812#0      ATGGTAGAATGAAAGTAGCTGGCTCACAGGAAGACTCCGGTTTAGATCCTGAACTAATAC 620
consensus_4812#1      ------------------------------------------------------------
consensus_4812#2      ------------------------------------------------------------
                                                                                  

consensus_4812#0      GGGCAGACAGGCACCTTTGTACATTCTGTGTTACTACCTTCTTTAATCTTGACGTTGTAT 680
consensus_4812#1      ------------------------------------------------------------
consensus_4812#2      ------------------------------------------------------------
                                                                                  

consensus_4812#0      AGCCAAAAAAA 691
consensus_4812#1      -----------
consensus_4812#2      -----------