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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1677 fasta sequence
[TCCAGCCAGCCACACCGCACATAACACACACACTCTCTCTCGCCATGGACACCGCCGATGAGCGGGAGACGCCGATAAGTTGGAGAATCTCTTTCCCATTAGACGCCAAAAGACGAGCAAGAGACGATGCGCTTACAGGAACGCCTCAAAGACCTACGGCTTCAGGAGGAAATTTGGCGTATCCTTTCCAAGATTTGCGCCTATGAGGGGACGGAGACGATCTCGAGTCCGATACCCATCTTAGTTTACTCGACATCAGACCCACAGCTTTGGGAGGCCGCTGTCCGCTACCAGGAGCAAGTCGGTGGGAGAGTAAGATTTCCCCTTCTGTATCTCAAGGTGGACAACGAGTCCGGGAAGGTTGTGGACGTGGGAAAGTACTGGGACGATCGGCACGGCGTGGGAGAACCTAGAGGTCGTTTCAAGTCATTCAAATGGTTTGCGGACAAGCATAAAATGTTTACGGCTGAAGCTGAAACAGCATCCTCCACCAAATCGACTGCACAACTTCAGCAGCACTCGTATTCAGAGGAGGAAGATTTGACCATGTACAAATCCCATCAACAATTACAGGTCTCAGAGGAGAAAGATACAACCATAGAAGAAAACTCAGAGAAAAAGTGGCATGCACGTCTCATAGATGAATACATTCGTGGAATATTGGAAGGAATGATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAACTATTTTGTAGAAAAGGATGTTTTTGAGGAAATTGATTACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTATCATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTTTATTTTGCGGAAGTCAAGATGAAGTATGGTTTCAAGTATCGTTTCTGTGCTCCTCTCGAGGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCACCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGAGGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTTAGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGATACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGCTATTTATATAAAATTAGTTTGTACAAAGTACTTACGCACACACCTTAGCTTTGCAGCTTCGCTAATTAAGTGCTACCATGTACTTGAGCCATATGTGCTGTATTGGGTATTTTGCAAATTTACATTTATCAT]
[+] EMBL AK109690 [TCCAGCCAGCCACACCGCACATAACACACACACTCTCTCTCGCCATGGACACCGCCGATGAGCGGGAGACGCCGATAAGTTGGAGAATCTCTTTCCCATTAGACGCCAAAAGACGAGCAAGAGACGATGCGCTTACAGGAACGCCTCAAAGACCTACGGCTTCAGGAGGAAATTTGGCGTATCCTTTCCAAGATTTGCGCCTATGAGGGGACGGAGACGATCTCGAGTCCGATACCCATCTTAGTTTACTCGACATCAGACCCACAGCTTTGGGAGGCCGCTGTCCGCTACCAGGAGCAAGTCGGTGGGAGAGTAAGATTTCCCCTTCTGTATCTCAAGGTGGACAACGAGTCCGGGAAGGTTGTGGACGTGGGAAAGTACTGGGACGATCGGCACGGCGTGGGAGAACCTAGAGGTCGTTTCAAGTCATTCAAATGGTTTGCGGACAAGCATAAAATGTTTACGGCTGAAGCTGAAACAGCATCCTCCACCAAATCGACTGCACAACTTCAGCAGCACTCGTATTCAGAGGAGGAAGATTTGACCATGTACAAATCCCATCAACAATTACAGGTCTCAGAGGAGAAAGATACAACCATAGAAGAAAACTCAGAGAAAAAGTGGCATGCACGTCTCATAGATGAATACATTCGTGGAATATTGGAAGGAATGATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAACTATTTTGTAGAAAAGGATGTTTTTGAGGAAATTGATTACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTATCATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTTTATTTTGCGGAAGTCAAGATGAAGTATGGTTTCAAGTATCGTTTCTGTGCTCCTCTCGAGGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCACCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGAGGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTTAGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGATACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGCTATTTATATAAAATTAGTTTGTACAAAGTACTTACGCACACACCTTAGCTTTGCAGCTTCGCTAATTAAGTGCTACCATGTACTTGAGCCATATGTGCTGTATTGGGTATTTTGCAAATTTACATTTATCAT]
[-] EMBL BE530899 [ TATTTTGCAGAAAAGGATGTTTTTGAGGAAATTGATTACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTATCATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTTTATTTTGCGGAAGTCAAGATGAAGTATGGTTTCAAGTATCGTTTCTGTGCTCCTCTCGAGGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCACCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGAGGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTTAGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGATACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGC ]
consensusID : consensus_4841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[GATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGGTAATTTCTGCACACTGATTGTAAACATGTTCTCTATTTTTGCTACGTAGTGTTTATATCATGGCGTCAAGATTGTAAGTTTGAAGCAATGGGCATATTAGACTGTGTCATTTTAAACATGTTTTTGGTTTAGTTAATGTTTTTTGCATGCTAAAGCTAAACTATGACATTTTTATAATGATGACTAATTTTGGGTTGAAACACAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAA]
[+] EMBL CF306742 [GATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGAGTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATTCTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATATCATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGGTAATTTCTGCACACTGATTGTAAACATGTTCTCTATTTTTGCTACGTAGTGTTTATATCATGGCGTCAAGATTGTAAGTTTGAAGCAATGGGCATATTAGACTGTGTCATTTTAAACATGTTTTTGGTTTAGTTAATGTTTTTTGCATGCTAAAGCTAAACTATGACATTTTTATAATGATGACTAATTTTGGGTTGAAACACAGCTCACACTATAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTGTACAACTCTATTCTAATAGCATGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4841#0 TCCAGCCAGCCACACCGCACATAACACACACACTCTCTCTCGCCATGGACACCGCCGATG 60
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 AGCGGGAGACGCCGATAAGTTGGAGAATCTCTTTCCCATTAGACGCCAAAAGACGAGCAA 120
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 GAGACGATGCGCTTACAGGAACGCCTCAAAGACCTACGGCTTCAGGAGGAAATTTGGCGT 180
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 ATCCTTTCCAAGATTTGCGCCTATGAGGGGACGGAGACGATCTCGAGTCCGATACCCATC 240
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 TTAGTTTACTCGACATCAGACCCACAGCTTTGGGAGGCCGCTGTCCGCTACCAGGAGCAA 300
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 GTCGGTGGGAGAGTAAGATTTCCCCTTCTGTATCTCAAGGTGGACAACGAGTCCGGGAAG 360
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 GTTGTGGACGTGGGAAAGTACTGGGACGATCGGCACGGCGTGGGAGAACCTAGAGGTCGT 420
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 TTCAAGTCATTCAAATGGTTTGCGGACAAGCATAAAATGTTTACGGCTGAAGCTGAAACA 480
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 GCATCCTCCACCAAATCGACTGCACAACTTCAGCAGCACTCGTATTCAGAGGAGGAAGAT 540
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 TTGACCATGTACAAATCCCATCAACAATTACAGGTCTCAGAGGAGAAAGATACAACCATA 600
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 GAAGAAAACTCAGAGAAAAAGTGGCATGCACGTCTCATAGATGAATACATTCGTGGAATA 660
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 TTGGAAGGAATGATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGA 720
consensus_4841#1 -----------GATAACTCAGATACGGAGATTGAGGACGATGAGAATGTTCTCTCTAAGA 49
*************************************************
consensus_4841#0 GTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATT 780
consensus_4841#1 GTCCTGTGGAAGTTGACCCATGTGCTATTGGTCAATTTCAACATTTCAAGGAGATGAATT 109
************************************************************
consensus_4841#0 CTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATAT 840
consensus_4841#1 CTCTCCGTGAAGAATGTGTCACTCCAAACCCTAAGAATGTTGACAGCTCATCAAAAATAT 169
************************************************************
consensus_4841#0 CATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGCT--------CACACTA 892
consensus_4841#1 CATCGCAACAAGGACATGCCAAATTGGCAGCAGGTTCTTCTAGGTAATTTCTGCACACTG 229
******************************************* * ******
consensus_4841#0 ----TAAGGCAGTGGGATATCATGAGTATGCCGATCTAATCAATCGAATAAACAAGGGTG 948
consensus_4841#1 ATTGTAAACATGTTCTCTATTTTTGCTACGTAGTGTTTAT--ATCATGGCGTCAAGATTG 287
*** ** *** * ** * * * ** *** **** **
consensus_4841#0 TACAACTCTATTCTAATAGCATGCAAGAACTT-TCTCAGAAAGGAACAGGTGGACTTAGT 1007
consensus_4841#1 TA-AGTTTGAAGCAATGGGCATATTAGACTGTGTCATTTTAAACATGTTTTTGGTTTAGT 346
** * * * * * **** *** * ** ** * * * *****
consensus_4841#0 GAAGCGTTCGTGGCATTCAGAAACTATTTTGTAGAAAAGGATGTTTTTGAGGAAATTGAT 1067
consensus_4841#1 TAA-TGTTTTTTGCATGCTAAAGCTAAACTAT-------GACATTTTT----ATAATGAT 394
** *** * **** * ** *** * * ** ***** * * ****
consensus_4841#0 TACAAATTCGGAGAAATATTGCATCACTGCTCTCGTACTGTGGGAATTAGGAAGATTTAT 1127
consensus_4841#1 GACTAATTTTGGG-----TTGAAACACAGCTCACACTATAAGGCAGTGGGATA---TCAT 446
** **** * * *** * *** **** * * ** * * * * * **
consensus_4841#0 CATCACTATAATTTCACAGTTGAGATGAAAAATGATAAGGACTGTTGGATCCCTAGGGTT 1187
consensus_4841#1 GAGTATGCCGATCTAATCAATCGAATAAACAAGGGT--GTACAACTCTATTCTAATAGCA 504
* * ** * * * ** ** ** * * * ** * ** * * *
consensus_4841#0 TATTTTGCGGAAGTCAAGATGAAGTATG-GTTTCAAGTATCGTTTCTGTGCTCCTCTCGA 1246
consensus_4841#1 TGCAAGAACTTTCTCAGAAAGGAACAGGTGGACTTAGTGAAGCGTTCGTGGCATTCAGAA 564
* *** * * * * * * *** * * *** ** *
consensus_4841#0 GGCGACTGATGATGGTCAATGTTATTCGTGCAAGAACCAAGGTATTGATAAACTCAAGCA 1306
consensus_4841#1 A----------------------------------------------------------- 565
consensus_4841#0 CCCATCTAGAGGAGGGTACTCAAAAGGTTATGATGGTGCTGTATGCAACCACCTTGGTGA 1366
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 GGATAGTTCTGATGAAGAGGACGAACTTATGTAACCACCTGCTAACTAGCCAGAGCCTTT 1426
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 AGGCATTAGAGCCAGAAGCGAAACTGATCGAGTGGCAGAGAAGCCAAACAGAGAGTTGAT 1486
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 ACTTAAGCTGTATTTATATAAATTTGTGCCTTCTGTCGGCAAGTTGTGCCAACTTTAGCT 1546
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 ATTTATATAAAATTAGTTTGTACAAAGTACTTACGCACACACCTTAGCTTTGCAGCTTCG 1606
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 CTAATTAAGTGCTACCATGTACTTGAGCCATATGTGCTGTATTGGGTATTTTGCAAATTT 1666
consensus_4841#1 ------------------------------------------------------------
consensus_4841#0 ACATTTATCAT 1677
consensus_4841#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||