cluster # 4845

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Oryza sativa
cluster # 4845 cluster # 4845 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4845#0 length = 893 sequences # 2

consensus_4845#1 length = 420 sequences # 1

consensusID : consensus_4845#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 893
fasta sequence

                              [GCCCGCCGCCTGCGCCGATCTCCATTCCGTGAGCAGAGCAGAGTCAACTTCCGCCGAATCTGCTCACCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGAGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTTCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTTTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGTAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGTTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGCAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAGGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATGGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTCTACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTGTAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGA-TACAACACTGAAG]

[+] EMBL CB666254             [GCCCGCCGCCTGCGCCGATCTCCATTCCGTGAGCAGAGCAGAGTCAACTTCCGCCGAATCTGCTCACCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGAGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTTCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTTTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGTAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGTTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGCAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAGGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATGGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTCTACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTGTAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGA TACA         ]
[-] EMBL CB666255             [                                                                                               TCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGAGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTTCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTTTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGTAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGTTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGCAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAGGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATGGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTCTACATCTTGGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTGTAATCTGAACATCTAAAGATAGGTAATCTGCATATGAAGATTACAACACTGAAG]




>consensus_4845#0
GCCCGCCGCCTGCGCCGATCTCCATTCCGTGAGCAGAGCAGAGTCAACTTCCGCCGAATC
TGCTCACCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGC
ATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCC
ATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATG
AAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGA
GTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCTT
CTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTTT
TAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTGT
AGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGGT
TTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAGC
AAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGAG
GCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGATG
GGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTTC
TACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTTG
TAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGATACAACACTGAAG

consensusID : consensus_4845#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [CTGTGAACGCGTGGGTGCCGCGCCACAGCCGAGCACTGCCAACGCCGGGCGCCACCACCCTGCTGGCTGCCGCCGAGCGCNGCCACCCCACCTGCCGCCGAGCAGCCCACCATCCATCTGCAATCGTGCATCTGATCTTCCAATTGATGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGGAGTTGTCAAGGTCAGAATTTCCTTTTTTTACTCTTAAGNCTTAACTAGTGGAGGTAACTGCTATGTATGCCCCATCTCCTGCAAAAAAAATTTTCTGAATATGCCGCCCCTTTTGCANATTTGATCATGTAGGNCAAGTTCATTGGGGGATAAATTTTTNTTGGGTAATTTTATCAGAGCTATNTAGATTGGGTTTNAAAT]

[+] EMBL AU029688             [CTGTGAACGCGTGGGTGCCGCGCCACAGCCGAGCACTGCCAACGCCGGGCGCCACCACCCTGCTGGCTGCCGCCGAGCGCNGCCACCCCACCTGCCGCCGAGCAGCCCACCATCCATCTGCAATCGTGCATCTGATCTTCCAATTGATGCTTCTATATGAAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGGAGTTGTCAAGGTCAGAATTTCCTTTTTTTACTCTTAAGNCTTAACTAGTGGAGGTAACTGCTATGTATGCCCCATCTCCTGCAAAAAAAATTTTCTGAATATGCCGCCCCTTTTGCANATTTGATCATGTAGGNCAAGTTCATTGGGGGATAAATTTTTNTTGGGTAATTTTATCAGAGCTATNTAGATTGGGTTTNAAAT]




>consensus_4845#1
CTGTGAACGCGTGGGTGCCGCGCCACAGCCGAGCACTGCCAACGCCGGGCGCCACCACCC
TGCTGGCTGCCGCCGAGCGCNGCCACCCCACCTGCCGCCGAGCAGCCCACCATCCATCTG
CAATCGTGCATCTGATCTTCCAATTGATGCTTCTATATGAAATGACTGACGGTGAGGACA
TCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGGAGTTGTCAAGGTCAGAATTTC
CTTTTTTTACTCTTAAGNCTTAACTAGTGGAGGTAACTGCTATGTATGCCCCATCTCCTG
CAAAAAAAATTTTCTGAATATGCCGCCCCTTTTGCANATTTGATCATGTAGGNCAAGTTC
ATTGGGGGATAAATTTTTNTTGGGTAATTTTATCAGAGCTATNTAGATTGGGTTTNAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4845#0      GCCCGCCGCCTGCGCCGATCTCCATTCCGTGAGCAGAGCAGAGTCAACTTCCGCCGAATC 60
consensus_4845#1      -----------------------------------------------------------C 1
                                                                                 *

consensus_4845#0      TGCTCACCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGC 120
consensus_4845#1      TGTGAACGCGTGGGTGCCGCGCCACAGCCGAGCACTGCCAACGC-----CGGGCGCCACC 56
                      **   **   *   * *    *     *  * * **  *  ***     ***  *  * *

consensus_4845#0      ATCCATTCAATCCAATCCTCTTTCTCATCTCTCTCTCCGCATCCTCGGTGGTGAGCATCC 180
consensus_4845#1      ACCC-TGCTGGCTGCCGCCGAGCGCNGCCACCCCACCTGCCGCCGAGCAGCCCACCATCC 115
                      * ** * *   *     *          * * *   * **  **  *  *   * *****

consensus_4845#0      ATTCAATCCAATCCTCTTTCTCATCTCTCTCTCTCTCCGCATCCTCGGTGCTTCTATATG 240
consensus_4845#1      ATCTG---CAATCGTGCATCTGATCTTCCA-------------ATTGATGCTTCTATATG 159
                      **      ***** *   *** ****  *               * * ************

consensus_4845#0      AAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGG- 299
consensus_4845#1      AAATGACTGACGGTGAGGACATCCAGCGTCTTGCGTCTTGTATGTGATAATGGCACTGGG 219
                      *********************************************************** 

consensus_4845#0      AGTGGTCAAGGGAGGTAGAGCCAGAGGCAAGGAGTAGGAGGGAAAGGGGATGGTGCCTCT 359
consensus_4845#1      AGTTGTCAAGGTCAGAATTTCCTTTTTTTACTCTTAAGNCTTAACTAG--TGGAGG---- 273
                      *** *******   * *   **       *    ** *    **   *  *** *     

consensus_4845#0      TCTTGGCTGCTTCAGTTCTTTTTTCCTCTCGGCCACAAGCAAATCAGCCAAGACTCTGTT 419
consensus_4845#1      ---TAACTGCT---ATGTATGCCCCATCTCCTGCAAAAAAAATTTTCTGAATATGCCGCC 327
                         *  *****    *   *    * ****   ** **  ** *     ** *  * *  

consensus_4845#0      TTAGATGGCGCCGAAGGCCACGGTGAGGCAGGGTTCGACAGAGGGATAGCCGTGACACTG 479
consensus_4845#1      CCTTTTG-CANATTTGATCATGT--AGGNCAAGTTC-ATTGGGGGATAAATTTT---TNT 380
                           ** *      *  ** *   ***    **** *  * ******    *       

consensus_4845#0      TAGATGAGGGCACCAGAGGCTGCCATTACGCCGTCGAGGAGGTGGGGGATGCTTCCATGG 539
consensus_4845#1      TGGGTAATTTTATCAGAG-CTATNTAGATTGGGTTTNAAAT------------------- 420
                      * * * *    * ***** **      *    **     *                    

consensus_4845#0      TTTTTCTCGCACCGGTGGGCGAGGCAGCCGTGATATCTCTCCTGGATCTCAGTAAGCAAG 599
consensus_4845#1      ------------------------------------------------------------
                                                                                  

consensus_4845#0      CAAGCACGTTCCCAGGGCTATCGAGGAGGCAGTCACAATGACCCTGATGGTCTTCAGCGA 659
consensus_4845#1      ------------------------------------------------------------
                                                                                  

consensus_4845#0      GGCATATATGAATTCCTTTGTCGCAGGTGGCGATGCAGTCCCGACGCTAATCATGTTGAT 719
consensus_4845#1      ------------------------------------------------------------
                                                                                  

consensus_4845#0      GGGCGAGGTGGTCAAGGCCTCTCTCCTTTACGAGGTGGGCTAATCGTGTCAGTTTTTTTT 779
consensus_4845#1      ------------------------------------------------------------
                                                                                  

consensus_4845#0      CTACATCTTTGTGGTAGAAACTAAGAAATCATATTATTTAGGTCAAAGAAATATAATCTT 839
consensus_4845#1      ------------------------------------------------------------
                                                                                  

consensus_4845#0      GTAATCTGAACATCTAAAGATATGTAATCTGCATATGAAGATACAACACTGAAG 893
consensus_4845#1      ------------------------------------------------------