cluster # 4863

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Oryza sativa
cluster # 4863 cluster # 4863 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4863#0 length = 1433 sequences # 1

consensus_4863#1 length = 940 sequences # 2

consensusID : consensus_4863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1433
fasta sequence

                              [CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAGAATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATACTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATCAGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACTGTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATTTTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTGTTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCTGGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA]

[+] EMBL AK106804             [CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAGAATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATACTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATCAGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACTGTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATTTTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTGTTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCTGGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA]




>consensus_4863#0
CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG
CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA
CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC
CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG
ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG
CCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAG
ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA
ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT
TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG
ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT
ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG
GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC
CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAG
AATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGC
CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT
TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT
ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG
CATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATA
CTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATC
AGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACT
GTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATT
TTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTG
TTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCT
GGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA

consensusID : consensus_4863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 940
fasta sequence

                              [TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA]

[-] EMBL AK105547             [TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGACCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCCAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGCCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTTTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGGTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCCCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA]
[+] EMBL AA750163             [     CATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGCTGTGAGGTCAGCCGTACCACACGACTTCTCAT  CGCGNSGCCACCCCGGCTAT ATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_4863#1
TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTGC
TGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGAC
CAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGCC
AAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAGA
CGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGGC
CAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAGA
TGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCAA
CCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGTT
TGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATGA
CCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGATA
TCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGGG
TTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATCC
CGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGCCGATGAGTATGACACCAATGTA
CCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACTTCATGTTAGGCGAGTTCAACCA
AGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACTACTTACTTCAGGTTGACATGAG
CTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4863#0      CTACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG 60
consensus_4863#1      -TACATCATCTATGACACAATTGGCAAGGTGCTCTCCATGATCCCTTGTGAACCTTCCTG 59
                       ***********************************************************

consensus_4863#0      CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA 120
consensus_4863#1      CTGTGAGGTCAGCCGTACCACACGACTTCTCATCGCGCGCCGCCACCCCGGCTATAATGA 119
                      ************************************************************

consensus_4863#0      CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC 180
consensus_4863#1      CCAGTCGTACGCACTGGTTCTCATGGCCAAGATGCCCAAGTTCGCCGGCGAGGACGACGC 179
                      ************************************************************

consensus_4863#0      CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG 240
consensus_4863#1      CAAGTTCCGGCGGGGACGACGCCAAGGGCAAGGGGAAGATGCCGGAGTTCGCTGAGGAAG 239
                      ************************************************************

consensus_4863#0      ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG 300
consensus_4863#1      ACGTTCTCACTGGAGACGAGGAAGACGTTCTCACCGGAGAAGACGTCTTCCTGGGCAAGG 299
                      ************************************************************

consensus_4863#0      CCAAGAAGGTGGAGTTCGCCGGTGGAAAAGACGACGGCGACAACGACATCAACTGGCAAG 360
consensus_4863#1      CCAAGAAGGTGGAGTTCGCCGGTGGAGAAGACGACGGCGACAACGACATCAACTGGCAAG 359
                      ************************** *********************************

consensus_4863#0      ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA 420
consensus_4863#1      ATGTCCTTCTCCTGTGGCCTTCGTCGTCCTCTTCGCCGTGGGAGCTGACCAAGACGGCCA 419
                      ************************************************************

consensus_4863#0      ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT 480
consensus_4863#1      ACCTACCCAACCAGTGGCTGGACGATGAGAGCTCGTTCGTAGCCGACCTGACTTTCTCGT 479
                      ************************************************************

consensus_4863#0      TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG 540
consensus_4863#1      TTGAGGGACATGGTTTTTGGGCGGATCTCCTGTGCGGCGTACTGTTTTGCTCTTGTGATG 539
                      ************************************************************

consensus_4863#0      ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT 600
consensus_4863#1      ACCTACTCTCCGACAAGGTTGATCGGGTGGACTTCAGCTTCATCAATCTTCCTATGGGAT 599
                      ************************************************************

consensus_4863#0      ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG 660
consensus_4863#1      ATCAAGCTGATGTCCGGTACACAGGGCAGGTGGCAGCACCAGAAGTTTATCGCACCATGG 659
                      ************************************************************

consensus_4863#0      GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC 720
consensus_4863#1      GTTATGCTGGGGGATCCATCCGATTCATCTCCATCGATGGATTCCTTGAGTACATCAATC 719
                      ************************************************************

consensus_4863#0      CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTGAAGAGTAACACTTGGGTGAAAG 780
consensus_4863#1      CCGGGGATCGCTATGTGACATTATGGAGGCTGCTGCTG---------------------- 757
                      **************************************                      

consensus_4863#0      AATATGAGATCAGTCTAAAGGAGTTGTGGAATCAACAAGAATTTTGTAATGCAAACCTGC 840
consensus_4863#1      -----------------------------------------------------------C 758
                                                                                 *

consensus_4863#0      CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT 900
consensus_4863#1      CGATGAGTATGACACCAATGTACCCCATCCTGAGCTCGCTAGAGGAACATATCATCTACT 818
                      ************************************************************

consensus_4863#0      TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT 960
consensus_4863#1      TCATGTTAGGCGAGTTCAACCAAGATCGGGATGGGATCGCCTTCCCAGTCGGTGCTTACT 878
                      ************************************************************

consensus_4863#0      ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG 1020
consensus_4863#1      ACTTACTTCAGGTTGACATGAGCTGTGGGAGAATCGTGTCGTCTGCACCCCTCCCTTCTG 938
                      ************************************************************

consensus_4863#0      CATGCAGTTTGGCGCCAGTCGTCGGTGGCTCTGATTTCATAAGTTACCTCCCTCATGATA 1080
consensus_4863#1      CA---------------------------------------------------------- 940
                      **                                                          

consensus_4863#0      CTCTTTATGACAGAGATGTGCTAAGCTCAGTTGTATCCCAAAGTATGTCAGGCTGTTATC 1140
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      AGTTCGGCCCTGCAACTGGTTTGGTATGAAGGGACTGCAATCTGGAGGTGGATTGGGACT 1200
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      GTTGGGCAACTGTAGCAATTTGGAAGGGAGGCTGCTGGTGACCATTTTGAAAGGGAAATT 1260
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      TTGAAAGGGAAGCTAATAGTAGTTGACACACATCTTGGTCTTTTATGTGGGAACACTTTG 1320
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      TTAGCTGTTACACTTGTTCTATCATCTGTTCTTAGTACTGATATGTTAATTTATGGCGCT 1380
consensus_4863#1      ------------------------------------------------------------
                                                                                  

consensus_4863#0      GGCCGTCAGCCGGTTGTGGTATGTTAATCTATAGAACATAATAATCCTACCTA 1433
consensus_4863#1      -----------------------------------------------------