cluster # 4869

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Oryza sativa
cluster # 4869 cluster # 4869 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4869#0 length = 812 sequences # 1

consensus_4869#1 length = 739 sequences # 1
consensus_4869#2 length = 280 sequences # 1

consensusID : consensus_4869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 812
fasta sequence

                              [TCTTTTAAGGTTCCATCATTTGTAGTATCTTATATATCATACCTTATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGGACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACATGCTTTTCATGTTTAACCTCCACTCGTACAAGCGAGAAAAATATTCCTCATTGAGTCCTTGGTTAGCTGGTTCTTCATCAACAGAGTGCTCAAGTACTGTAGGACCCATAAGAATGGAACCTGGCACTCGAAATCCCCTTATAACAACCTCATTATGTTCCTCAAAGCAGTTGACAAGATGGATAGTGCAGAATGGTTCTACGTCAAACCAAATTACTG]

[+] EMBL CB625952             [TCTTTTAAGGTTCCATCATTTGTAGTATCTTATATATCATACCTTATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGGACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACATGCTTTTCATGTTTAACCTCCACTCGTACAAGCGAGAAAAATATTCCTCATTGAGTCCTTGGTTAGCTGGTTCTTCATCAACAGAGTGCTCAAGTACTGTAGGACCCATAAGAATGGAACCTGGCACTCGAAATCCCCTTATAACAACCTCATTATGTTCCTCAAAGCAGTTGACAAGATGGATAGTGCAGAATGGTTCTACGTCAAACCAAATTACTG]




>consensus_4869#0
TCTTTTAAGGTTCCATCATTTGTAGTATCTTATATATCATACCTTATTACATGAAGATAT
ATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCA
TCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTG
TTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGC
CTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATT
TGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATG
ATGGGACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTT
TGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAA
ATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGAC
TGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACATGCTTTT
CATGTTTAACCTCCACTCGTACAAGCGAGAAAAATATTCCTCATTGAGTCCTTGGTTAGC
TGGTTCTTCATCAACAGAGTGCTCAAGTACTGTAGGACCCATAAGAATGGAACCTGGCAC
TCGAAATCCCCTTATAACAACCTCATTATGTTCCTCAAAGCAGTTGACAAGATGGATAGT
GCAGAATGGTTCTACGTCAAACCAAATTACTG

consensusID : consensus_4869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence

                              [GGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAACATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGTACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACAT]

[+] EMBL CB622792             [GGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAACATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGTACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACAT]




>consensus_4869#1
GGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAACATATATTCAAGTTCTATA
CTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGAT
TTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATAT
ATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCA
GTAATGTACACCCCTCCAGGAGTCATCTCTTCTTATACGTGCTTCTTGAGATGAATGCTC
CATGAAAACCATAGGGTACTCTGTGTTTCAATACTATCTTAGCAACTGGTCCATTCTCAA
ATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTTGATTTCCTCGTCATGTACAAAAG
AGATTATCCATCCGTCATCCTCATTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTG
AGCAAAATTTGTTTCTACCAAGATGATGGTACTCTACATTTATTAGATCTTGACAGGGCT
TAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCAC
AACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTGTGCATATGCATACTTGTGATTCA
AGCCAACATATTTGTCATTGATGACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGT
ATTTTTCTATAACAGACAT

consensusID : consensus_4869#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [TTTTTTTTTTTAGGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAGCATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTTGTCTCGTCCTCT]

[+] EMBL CA761100             [TTTTTTTTTTTAGGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAGCATATATTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCATCTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGTAGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTTGTCTCGTCCTCT]




>consensus_4869#2
TTTTTTTTTTTAGGATTAAATTTTGATATATTGCTTACAATTGTAAATAGAAGCATATAT
TCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCAT
CTAGAACTTGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCACATCATTTGT
AGTATCTTATATATCATATCAAATTACATGAAGATATATATATTTTTGTAGTAACACAAC
ACGATGTTTGCAGTAATGTACACCCCTTGTCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4869#1      ------------------------------------------------------------
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      TCTTTTAAGGTTCCATCATTTGTAGTATCTTATATATCATACCTTATTACATGAAGATAT 60
                                                                                  

consensus_4869#1      ------------------------------------------------------------
consensus_4869#2      ----------------------------------------------------------TT 2
consensus_4869#0      ATATATTTTTGTAGTAACACAACACGATGTTTGCAGTAATGTACACCCCTCCAGGAGTCA 120
                                                                                  

consensus_4869#1      ----------GGATTAAATTTTGATAT-ATTGCTTAC--AATTGTAAATAGAAACATATA 47
consensus_4869#2      TTTTTTTTTAGGATTAAATTTTGATAT-ATTGCTTAC--AATTGTAAATAGAAGCATATA 59
consensus_4869#0      TCTCTTCTTATACGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTG 180
                                    *   * **** ** * ****     **    * *  * *   * * 

consensus_4869#1      TTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCA 107
consensus_4869#2      TTCAAGTTCTATACTTGCTTATGTTGCAGTTTCATGTTGGATCCCGTTATATGTTTCGCA 119
consensus_4869#0      TTTCAATACTATCTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCG-ATGATATGTG 239
                      **  * * ****  * **   ** * ** * ***  *       * *   *** *  *  

consensus_4869#1      TCTA-GAACT--TGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCA-CATCA 163
consensus_4869#2      TCTA-GAACT--TGATTTCCTAGGTACGTCCCTAAAGAGAAACACAATCAATCA-CATCA 175
consensus_4869#0      CCTGTGAATTGTTGATTTCCTCGTCATGTACA-AAAGAGATTATCCATCCGTCATCCTCA 298
                       **  *** *  ********* *  * ** *  *******    * ***  *** * ***

consensus_4869#1      TTTGTAGTATCTTATATATCATATCAAATTACATG-AAGATATATATATTTTTGT---AG 219
consensus_4869#2      TTTGTAGTATCTTATATATCATATCAAATTACATG-AAGATATATATATTTTTGT---AG 231
consensus_4869#0      TTTGCTCCATTGACCTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGA 358
                      ****    **      *   *    ** ** *     **  * ** * *** *       

consensus_4869#1      TAACACAACACGATGTTTGCAGTAATGT-ACACCCCTCC-AGGAGTCATCTCTTCTTATA 277
consensus_4869#2      TAACACAACACGATGTTTGCAGTAATGT-ACACCCCTTG-TCTCGTCCTCT--------- 280
consensus_4869#0      TGATGGGACTCTACATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGT 418
                      * *    ** * *  ***     *   * ***   **       *** **          

consensus_4869#1      CGTGCTTCTTGAGATGAATGCTCCATGAAAACCATAGGGTACTCTGTGTTTCAATACTAT 337
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      TTTGCAAAACCTCCAAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGG 478
                                                                                  

consensus_4869#1      CTTAGCAACTGGTCCATTCTCAAATCTTTGTGCATCGATGATATGTGCCTGTGAATTGTT 397
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      AAATCCACCACTTGTGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATG 538
                                                                                  

consensus_4869#1      GATTTCCTCGTCATGTACAAAAGAGATTATCCATCCGTCATCCTCATTTGCTCCATTGAC 457
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      ACTGGGAATTCCATATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACATGCTT 598
                                                                                  

consensus_4869#1      CTTCGGAACAAAAGTTGCTCCTGAGCAAAATTTGTTTCTACCAAGATGATGGTACTCTAC 517
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      TTCATGTTTAACCTCCACTCGTACAAGCGAGAAAAATATTCCTCATTGAGTCCTTGGTTA 658
                                                                                  

consensus_4869#1      ATTTATTAGATCTTGACAGGGCTTAATTTTGTCTTCAAGATATAGTTTTGCAAAACCTCC 577
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      GCTGGTTCTTCATCAACAGAGTGCTCAAGTACTGTAGGACCCATAAGAATGGAACCTGGC 718
                                                                                  

consensus_4869#1      AAATTTTGGTCGCACTATTCCACAACCACCTGCCAAGCTCCCTTGGAAATCCACCACTTG 637
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      ACTCGAAATCCCCTTATAACAACCTCATTATGTTCCTCAAAGCAGTTGACAAGATGGATA 778
                                                                                  

consensus_4869#1      TGCATATGCATACTTGTGATTCAAGCCAACATATTTGTCATTGATGACTGGGAATTCCAT 697
consensus_4869#2      ------------------------------------------------------------
consensus_4869#0      GTGCAGAATGGTTCTACGTCAAACCAAATTACTG-------------------------- 812
                                                                                  

consensus_4869#1      ATCAATACCTGCTCCAGTTAAGTATTTTTCTATAACAGACAT 739
consensus_4869#2      ------------------------------------------
consensus_4869#0      ------------------------------------------