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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1474 fasta sequence
[TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGGTAAACTTAAGATAGTTCATTTCTGAATTTGTTTCAGTTCAGTCACTGAACTTCAGCGCAGAAAAAAGAAAAGGAAAAGAAAGAAGGCAACCACTGTATGCTTTCAAACAAAAGTAATCATTCATTTGAACTTTTCAAGAAAACCATGTTTTTAACTTGATGTGCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGTTTGTTTCATCTGAACATTTCTTGACATGTATACAGAATTTCTTATCCCCTGAATCCCTTCAGATAACTTAGATACACAGGTCAAAATTCAGAAGACACTTACTTTTTATTTGTTAGAGAACATATATCATTGGTTGTCATTTTACAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGTCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCCTTGTAAAATTGTAATATATGCGTACAGAGTAAGA]
[+] EMBL AK102443 [TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGGTAAACTTAAGATAGTTCATTTCTGAATTTGTTTCAGTTCAGTCACTGAACTTCAGCGCAGAAAAAAGAAAAGGAAAAGAAAGAAGGCAACCACTGTATGCTTTCAAACAAAAGTAATCATTCATTTGAACTTTTCAAGAAAACCATGTTTTTAACTTGATGTGCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGTTTGTTTCATCTGAACATTTCTTGACATGTATACAGAATTTCTTATCCCCTGAATCCCTTCAGATAACTTAGATACACAGGTCAAAATTCAGAAGACACTTACTTTTTATTTGTTAGAGAACATATATCATTGGTTGTCATTTTACAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGTCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCCTTGTAAAATTGTAATATATGCGTACAGAGTAAGA]
consensusID : consensus_4883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1273 fasta sequence
[TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATCATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACA-GCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC-TTGTAAAATTGTAATATATGCGTACAGAGTAAGAAAAGGTTGGCAGAAAGAAAGAGAAAAGAGTAGGAAAAATGATGAACCTATGGGATCCACTGCCACGTGTCAAGCTACGTGGTGCCATGTCAGATGAAATCACCAGAAAAAAAAGT]
[+] EMBL AK107393 [TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCGCCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGAACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAGGCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGCCTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGTCAGATTCAGACTGCAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATTGTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCAGGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGGTGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGGATTCCAGAGATCATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACA GCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC TTGTAAAATTGTAATATATGCGTACAGAGTAAGAAAAGGTTGGCAGAAAGAAAGAGAAAAGAGTAGGAAAAATGATGAACCTATGGGATCCACTGCCACGTGTCAAGCTACGTGGTGCCATGTCAGATGAAATCACCAGAAAAAAAAGT]
[+] EMBL BI799780 [ TGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATCAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAAGAGGGCTTCAGTGAAGGCAATTTTCGTTGGTCACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGACACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCTGAACACGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGATATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACAAATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCCTTTGTAAAATTGTAAaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4883#0 TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCG 60
consensus_4883#1 TGCGGTTCGCGTCGGGAGGAGGGTTCAAGGTGGCGCTCTTCGCCGACCTGCATTACGGCG 60
************************************************************
consensus_4883#0 AGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCG 120
consensus_4883#1 AGAACGCCTGGACGGACTGGGGCCCACGGCAGGACGCCGGCTCCGACCGCGTCATGGCCG 120
************************************************************
consensus_4883#0 CCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGA 180
consensus_4883#1 CCGTCCTCGACGCCGAGAAGCCCGACTTCGTGGTGTACCTCGGCGACCTCGTGACCGCGA 180
************************************************************
consensus_4883#0 ACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAG 240
consensus_4883#1 ACAATCTAGGGATCCCCAACGCGAGCCTGTACTGGGACAGAGCGATTTCTCCGACCAGAG 240
************************************************************
consensus_4883#0 GCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGC 300
consensus_4883#1 GCAGGGGGATCCCGTGGGCGACGGTGTTCGGGAACCACGACGACATGCCGTTCGAGTGGC 300
************************************************************
consensus_4883#0 CTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGT 360
consensus_4883#1 CTCCTGAGTGGTTCTCTCCTGCAGGCGTTCCGCCGCTGCATTGCCCACCACCGAGCATGT 360
************************************************************
consensus_4883#0 CAGATTCAGGTAAACTTAAGATAGTTCATTTCTGAATTTGTTTCAGTTCAGTCACTGAAC 420
consensus_4883#1 CAGATTCAG--------------------------------------------------- 369
*********
consensus_4883#0 TTCAGCGCAGAAAAAAGAAAAGGAAAAGAAAGAAGGCAACCACTGTATGCTTTCAAACAA 480
consensus_4883#1 ------------------------------------------------------------
consensus_4883#0 AAGTAATCATTCATTTGAACTTTTCAAGAAAACCATGTTTTTAACTTGATGTGCAGACTG 540
consensus_4883#1 --------------------------------------------------------ACTG 373
****
consensus_4883#0 CAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATT 600
consensus_4883#1 CAGCTTCCGAGGAACACCGCGACTTGAACTGATGACAAGTGAGGTTATCCGTAATGGATT 433
************************************************************
consensus_4883#0 GTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCA 660
consensus_4883#1 GTCATATTCATCAAATGGCCCCAAGGACCTCTGGCCTGCTGTTTCCAACTACGTCTTGCA 493
************************************************************
consensus_4883#0 GGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGG 720
consensus_4883#1 GGTGCTATCACAGAAGCGAGATGATCCAGCTCTGCTCATGTATTTCCTTGACTCCGGTGG 553
************************************************************
consensus_4883#0 TGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCA 780
consensus_4883#1 TGGATCCTATCCAGAAGTGATATCCAGTGCTCAGGTTCAGTGGTTTCATAGTCAATCTCA 613
************************************************************
consensus_4883#0 GTTCCTTAATCCAAATGGAAGGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGC 840
consensus_4883#1 GTTCCTTAATCCAAATGGAAGGATTCCAGAGATCATCTTTTGGCATATTCCAAGTACGGC 673
********************************* **************************
consensus_4883#0 ATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTAT 900
consensus_4883#1 ATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTAT 733
************************************************************
consensus_4883#0 CAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAA 960
consensus_4883#1 CAACAGGGAAGAAGTAGCACCACAAGAAGCTGAATGGGGTATGATGGATGCCCTTGTCAA 793
************************************************************
consensus_4883#0 GAGGGCTTCAGTGAAGGTTTGTTTCATCTGAACATTTCTTGACATGTATACAGAATTTCT 1020
consensus_4883#1 GAGGGCTTCAGTGAAGG------------------------------------------- 810
*****************
consensus_4883#0 TATCCCCTGAATCCCTTCAGATAACTTAGATACACAGGTCAAAATTCAGAAGACACTTAC 1080
consensus_4883#1 ------------------------------------------------------------
consensus_4883#0 TTTTTATTTGTTAGAGAACATATATCATTGGTTGTCATTTTACAGGCAATTTTCGTTGGT 1140
consensus_4883#1 ----------------------------------------------CAATTTTCGTTGGT 824
**************
consensus_4883#0 CACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGTCCGA 1200
consensus_4883#1 CACAACCACGGCCTGGATTGGTGCTGCCCACACGAGAAACTCTGGCTATGTTTTGCCCGA 884
******************************************************* ****
consensus_4883#0 CACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCT 1260
consensus_4883#1 CACACAGGCTATGGTGGCTACGGTAACTGGCCAAGAGGAGCAAGGGTTATTGAGATATCT 944
************************************************************
consensus_4883#0 GAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGAT 1320
consensus_4883#1 GAACAGCCCTTCTCAATTCAGTCATGGATACGGATGGAGGATGGGACAACGCACAGCGAT 1004
************************************************************
consensus_4883#0 ATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACA 1380
consensus_4883#1 ATTAGCTTGAGCTCCTAGACTTGTAAATGAAATGTAGTTGCTGGAGTTTTATTTCAGACA 1064
************************************************************
consensus_4883#0 AATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC 1440
consensus_4883#1 AATAAAGAGTCCAAGTAGGAAAATGAAGGTGGACACTGTATATAATTAAGCTGAGCCCCC 1124
************************************************************
consensus_4883#0 TTGTAAAATTGTAATATATGCGTACAGAGTAAGA-------------------------- 1474
consensus_4883#1 TTGTAAAATTGTAATATATGCGTACAGAGTAAGAAAAGGTTGGCAGAAAGAAAGAGAAAA 1184
**********************************
consensus_4883#0 ------------------------------------------------------------
consensus_4883#1 GAGTAGGAAAAATGATGAACCTATGGGATCCACTGCCACGTGTCAAGCTACGTGGTGCCA 1244
consensus_4883#0 -----------------------------
consensus_4883#1 TGTCAGATGAAATCACCAGAAAAAAAAGT 1273
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||