cluster # 4887

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Oryza sativa
cluster # 4887 cluster # 4887 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4887#0 length = 593 sequences # 1

consensus_4887#1 length = 570 sequences # 2

consensusID : consensus_4887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TATCCGGCGCGCGAAGAGGAGGCTCGCCGCCTCGCCGCTGCAGCTCCGTGCGGTCGTCGTCGGCGGCGGCGCTCTTTCGGTCCTCGCCGGCGGGTCTCGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTGTCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTCTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK106435             [TATCCGGCGCGCGAAGAGGAGGCTCGCCGCCTCGCCGCTGCAGCTCCGTGCGGTCGTCGTCGGCGGCGGCGCTCTTTCGGTCCTCGCCGGCGGGTCTCGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTGTCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTCTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4887#0
TATCCGGCGCGCGAAGAGGAGGCTCGCCGCCTCGCCGCTGCAGCTCCGTGCGGTCGTCGT
CGGCGGCGGCGCTCTTTCGGTCCTCGCCGGCGGGTCTCGGGAACCGAGTGCTCAAATGGG
TCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGA
AGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGG
ACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTGTC
AACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCA
AATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGC
ATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTCT
TAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATG
CGATTCAAAATTATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4887#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 570
fasta sequence

                              [AGAGGACGAGACAAGGGGGAACATGATATGGCAGATTTGTACAATTATTTTGTAAGTGTAATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTTTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTATCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTTTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTAAAAAAAAAAAAAAAAA]

[-] EMBL CA761004             [AGAGGACGAGACAAGGGGGAACATGATATGGCAGATTTGTACAATTATTTTGTAAGTGTAATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTTTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTATCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTTTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAAATTAAAAAAAAAAAAAAAAA]
[+] EMBL CA766948             [                          TATGGCAGATTTGTACAATTATTTTGTAAGTGTAATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATGGGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATTGAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGGGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTATCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGCAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATGCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTCTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCATGCGATTCAAA                    ]




>consensus_4887#1
AGAGGACGAGACAAGGGGGAACATGATATGGCAGATTTGTACAATTATTTTGTAAGTGTA
ATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATGG
GTCATGGCCCAAGGAGGCTGGTCTTTGGTGCATATGCCATGCCACCCTGGGTGCCTATTG
AAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGGG
GACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTAT
CAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATGC
AAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAATG
CATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATTT
TTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCAT
GCGATTCAAAATTAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4887#0      TATCCGGCGCGCGAAGAGGAGGCTCGCCGCCTCGCCGCTGCAGCTCCGTGCGGTCGTCGT 60
consensus_4887#1      -AGAGGACGAGACAAGGGGGAACATGATATGGCAGATTTGTACAATTATTTTGTAAGTGT 59
                       *   * ** *  *** **   *  *      *     ** *      *   **    **

consensus_4887#0      CGGCGGCGGCGCTCTTTCGGTCCTCGCCGGC--GGGTCTCGGGAACCGAGTGCTCAAATG 118
consensus_4887#1      AATTGTATCAAATGATTTGATGCAAAATAACTTGTGTGTAGGGAACCGAGTGCTCAAATG 119
                          *       *  ** * * *       *  * ** * ********************

consensus_4887#0      GGTCATGGCCCAAGGAGGCTGGTCTCTGGTGCATATGCCATGCCACCCTGGGTGCCTATT 178
consensus_4887#1      GGTCATGGCCCAAGGAGGCTGGTCTTTGGTGCATATGCCATGCCACCCTGGGTGCCTATT 179
                      ************************* **********************************

consensus_4887#0      GAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGG 238
consensus_4887#1      GAAGTGAAAATTGATCAGAAATGGAAACGAGCATTTGTATTGAGACAAGCCGATCACAGG 239
                      ************************************************************

consensus_4887#0      GGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTG 298
consensus_4887#1      GGACTCTGTCTTGTAAGAGTTACAGGGACACCCGATGCTGAGCCAGTCATGGTGCCATTA 299
                      *********************************************************** 

consensus_4887#0      TCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATG 358
consensus_4887#1      TCAACGATTCGATTACCTTCTCGGGTCCATCGTGCTAAGAGAAGACCAGAAACTGCCATG 359
                      ************************************************************

consensus_4887#0      CAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAAT 418
consensus_4887#1      CAAATACAAGTGAAGAAGGCTAGGATTGAGCAAAGCAGTGACGACGAAGAATAGTATAAT 419
                      ************************************************************

consensus_4887#0      GCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATT 478
consensus_4887#1      GCATGCCTGTAAGTATGTATGTTGCTATAACACATGTTGTTTTTTTAGGATATAAGAATT 479
                      ************************************************************

consensus_4887#0      CTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCA 538
consensus_4887#1      TTTAGCAACATTTTTACCTTTCATGCCTTTGTAACAGAATATTTGGTCATATTGTAGCCA 539
                       ***********************************************************

consensus_4887#0      TGCGATTCAAAATTATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 593
consensus_4887#1      TGCGATTCAAAATTA------AAAAAAAAAAAAAAAA------------------ 570
                      ***************      ****************