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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2312 fasta sequence
[AAAACTGCAGTCCAGTTATCTTGTGCTAGGTACTCTCTCTCTCTGGGTGCACCTGTCTGACCCCCAAGGCCCCAAGTTACTTCTTATTGATTCAACCCAGAAGGTTAGGCCTTACATTGAACTTTGAATTTCTCACTTTTTTCTGTATGGAATCATGCATTATTTCATTTCACTGCCCCCTGCATGAATATCTCTTATATCACAAAATTGATTCAATTCAGAAGGCTGGCCTTTTCATATCCTACAGCATTGCACTTTGTTAGTACTTATTAGGAATTCACTGGTCTGTCTTTTGATTTAGTGATTGATATAGTATATATTGATTCTTGATCAGGGAGGGAATCCTACAGATTACTGAAGATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGCATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATGGCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAGCCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATACGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCCTTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGCAATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCTAATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGACCCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAACAAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTGTTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTACAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCTCCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAAGACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCTACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGTAGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTGAATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGCAAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACGCCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATTAATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATCATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATGCTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATTCTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCACCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCTCCTTCTAATATATCCGGCAGAGCTCCTGCCGT]
[+] EMBL AK102706 [AAAACTGCAGTCCAGTTATCTTGTGCTAGGTACTCTCTCTCTCTGGGTGCACCTGTCTGACCCCCAAGGCCCCAAGTTACTTCTTATTGATTCAACCCAGAAGGTTAGGCCTTACATTGAACTTTGAATTTCTCACTTTTTTCTGTATGGAATCATGCATTATTTCATTTCACTGCCCCCTGCATGAATATCTCTTATATCACAAAATTGATTCAATTCAGAAGGCTGGCCTTTTCATATCCTACAGCATTGCACTTTGTTAGTACTTATTAGGAATTCACTGGTCTGTCTTTTGATTTAGTGATTGATATAGTATATATTGATTCTTGATCAGGGAGGGAATCCTACAGATTACTGAAGATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGCATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATGGCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAGCCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATACGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCCTTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGCAATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCTAATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGACCCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAACAAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTGTTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTACAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCTCCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAAGACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCTACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGTAGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTGAATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGCAAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACGCCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATTAATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATCATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATGCTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATTCTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCACCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCTCCTTCTAATATATCCGGCAGAGCTCCTGCCGT]
consensusID : consensus_4922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[ACAAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCT--CTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCCCCTAGTGGTCTGCTCTTTCTTGACCTCTGTAAAAAAAAAAAAAAA]
[-] EMBL CA759102 [ACAAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCT CTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCCCCTAGTGGTCTGCTCTTTCTTGACCTCTGTAAAAAAAAAAAAAAA]
[-] EMBL AU225508 [ CCGCT CCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTAACTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGAgcggc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4922#0 AAAACTGCAGTCCAGTTATCTTGTGCTAGGTACTCTCTCTCTCTGGGTGCACCTGTCTGA 60
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CCCCCAAGGCCCCAAGTTACTTCTTATTGATTCAACCCAGAAGGTTAGGCCTTACATTGA 120
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 ACTTTGAATTTCTCACTTTTTTCTGTATGGAATCATGCATTATTTCATTTCACTGCCCCC 180
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 TGCATGAATATCTCTTATATCACAAAATTGATTCAATTCAGAAGGCTGGCCTTTTCATAT 240
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CCTACAGCATTGCACTTTGTTAGTACTTATTAGGAATTCACTGGTCTGTCTTTTGATTTA 300
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 GTGATTGATATAGTATATATTGATTCTTGATCAGGGAGGGAATCCTACAGATTACTGAAG 360
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 ATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGC 420
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 ATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATG 480
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 GCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAG 540
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATA 600
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCC 660
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 TTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGC 720
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 AATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCT 780
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 AATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGAC 840
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAAC 900
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 AAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTG 960
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 TTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTA 1020
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCT 1080
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAA 1140
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 GACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCT 1200
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 ACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGT 1260
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 AGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTG 1320
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 AATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGC 1380
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 AAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACG 1440
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATT 1500
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 AATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATC 1560
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 ATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATG 1620
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATT 1680
consensus_4922#1 ------------------------------------------------------------
consensus_4922#0 CTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGAT 1740
consensus_4922#1 --------------------ACAAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGAT 40
* *************************************
consensus_4922#0 CATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCAC 1800
consensus_4922#1 CATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCAC 100
************************************************************
consensus_4922#0 GCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAA 1860
consensus_4922#1 GCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAA 160
************************************************************
consensus_4922#0 TTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCT 1920
consensus_4922#1 TTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCT 220
************************************************************
consensus_4922#0 CCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAA 1980
consensus_4922#1 CCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAA 280
************************************************************
consensus_4922#0 CCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTT 2040
consensus_4922#1 CCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTT 340
************************************************************
consensus_4922#0 TGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTA 2100
consensus_4922#1 TGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTA 400
************************************************************
consensus_4922#0 GTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTT 2160
consensus_4922#1 GTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTT 460
************************************************************
consensus_4922#0 GTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAA 2220
consensus_4922#1 GTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAA 520
************************************************************
consensus_4922#0 AATGAAAACTGAAAATGTCACCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCT 2280
consensus_4922#1 AATGAAAACTGAAAATGTCCCCTAGTGGTCTGCTCTTTCTTGACCTCTGTAAAAAAAAAA 580
******************* ********************************
consensus_4922#0 CCTTCTAATATATCCGGCAGAGCTCCTGCCGT 2312
consensus_4922#1 AAAAA--------------------------- 585
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||