cluster # 4931

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Oryza sativa
cluster # 4931 cluster # 4931 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4931#0 length = 664 sequences # 1

consensus_4931#1 length = 608 sequences # 2

consensusID : consensus_4931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [TTTTTTTTTTTTTTTATTGGTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAGTCCAACTTTGTTCTTCCTCTCAGGCAAGGGTGCCAACCAAACAAGTGTAGTCCCAGCAGCCTGACCAAGCAATTTTCATCTACTTCTTCTATGCCTCCCAGGCGTGCAAAATTTTCAGGCATGGGACTCAGGGCACCAACCAAACAGGCCCTTTCCCCAATTGATAAGCATGCGATCAAGAACACGGCACGAAATGAACAAACTCAGCAGCCAGACAGCAACAAGACAACAAATACATCACACGTCTTCAGCACTTCTAGCTTCCTCTTCCATTTATTGATTTATTCACATTTGTGGACAAACCATCATTAGCCAATTTCCGAGCAAAAACACAAACTTTCTGCAGAACTCTCGCCTTCCAAATGTTGCACCAAAATTGCCGATTATCATCAAGGTCTCTTTCAGATGCATTGCTAAGTCTGTCCGCACCATGAACAGAGTTTCCCACTTCTCTGATTTTCTCAAACTGTCAAGCAATGTAAGCACAAAACACCTTTTTTTTGGATAGTGGATAAGAATCCGGCCTCCATATCCACGAGTGGATATACACGACCAAAGTCACAAAACATCTAGGTCGACATGTTGTTGCAC]

[+] EMBL CA760874             [TTTTTTTTTTTTTTTATTGGTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAGTCCAACTTTGTTCTTCCTCTCAGGCAAGGGTGCCAACCAAACAAGTGTAGTCCCAGCAGCCTGACCAAGCAATTTTCATCTACTTCTTCTATGCCTCCCAGGCGTGCAAAATTTTCAGGCATGGGACTCAGGGCACCAACCAAACAGGCCCTTTCCCCAATTGATAAGCATGCGATCAAGAACACGGCACGAAATGAACAAACTCAGCAGCCAGACAGCAACAAGACAACAAATACATCACACGTCTTCAGCACTTCTAGCTTCCTCTTCCATTTATTGATTTATTCACATTTGTGGACAAACCATCATTAGCCAATTTCCGAGCAAAAACACAAACTTTCTGCAGAACTCTCGCCTTCCAAATGTTGCACCAAAATTGCCGATTATCATCAAGGTCTCTTTCAGATGCATTGCTAAGTCTGTCCGCACCATGAACAGAGTTTCCCACTTCTCTGATTTTCTCAAACTGTCAAGCAATGTAAGCACAAAACACCTTTTTTTTGGATAGTGGATAAGAATCCGGCCTCCATATCCACGAGTGGATATACACGACCAAAGTCACAAAACATCTAGGTCGACATGTTGTTGCAC]




>consensus_4931#0
TTTTTTTTTTTTTTTATTGGTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAG
TAATTATATACAGTCCAACTTTGTTCTTCCTCTCAGGCAAGGGTGCCAACCAAACAAGTG
TAGTCCCAGCAGCCTGACCAAGCAATTTTCATCTACTTCTTCTATGCCTCCCAGGCGTGC
AAAATTTTCAGGCATGGGACTCAGGGCACCAACCAAACAGGCCCTTTCCCCAATTGATAA
GCATGCGATCAAGAACACGGCACGAAATGAACAAACTCAGCAGCCAGACAGCAACAAGAC
AACAAATACATCACACGTCTTCAGCACTTCTAGCTTCCTCTTCCATTTATTGATTTATTC
ACATTTGTGGACAAACCATCATTAGCCAATTTCCGAGCAAAAACACAAACTTTCTGCAGA
ACTCTCGCCTTCCAAATGTTGCACCAAAATTGCCGATTATCATCAAGGTCTCTTTCAGAT
GCATTGCTAAGTCTGTCCGCACCATGAACAGAGTTTCCCACTTCTCTGATTTTCTCAAAC
TGTCAAGCAATGTAAGCACAAAACACCTTTTTTTTGGATAGTGGATAAGAATCCGGCCTC
CATATCCACGAGTGGATATACACGACCAAAGTCACAAAACATCTAGGTCGACATGTTGTT
GCAC

consensusID : consensus_4931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence

                              [AGACAAGGGGGAGAGGATTAGAACTGTAATCCTCTCGTTATTAGGCTGCACGACGCTGCCACAGCCACCGTCGTGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTNGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCCGCTCCCATNGTCGTGAGAAGCCACTTCGAATCCCGTCGTCTTTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGCTCTGCCCCTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTTTTCTCCCCTTCTTGATGGCGTGGATTTGTGGATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGTTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAAAAAAA]

[-] EMBL CA763315             [AGACAAGGGGGAGAGGATTAGAACTGTAATCCTCTCGTTATTAGGCTGCACGACGCTGCCACAGCCACCGTCGTGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTNGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCCGCTCCCATNGTCGTGAGAAGCCACTTCGAATCCCGTCGTCTTTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGCTCTGCCCCTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTTTTCTCCCCTTCTTGATGGCGTGGATTTGTGGATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGTTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAAAAAAA]
[+] EMBL CA766922             [                  TAGAACTGTAATCCTCTCGTTATTAGGCTGCACGACGCTGCCACAGCCACCGTCGTGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTTGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCCGCTCCCATCGTCGTGAGAAGCCACTTCGAATCCCGTCGTCTCTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGCTCTGCCCCTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTTTTCTCCCCTTCTTGATGGCGTGGATTTGTGGATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGGTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGT                 ]




>consensus_4931#1
AGACAAGGGGGAGAGGATTAGAACTGTAATCCTCTCGTTATTAGGCTGCACGACGCTGCC
ACAGCCACCGTCGTGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTNGCCGTCG
CGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCCGCTCCCATNGTCGTGAGAAGCCACTTC
GAATCCCGTCGTCTTTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGCTCTGCCC
CTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTG
ATGGATGTGGCATGGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTG
ATGGATGCGGCGTGGATTTGGGGACTCTTTTTCTCCCCTTCTTGATGGCGTGGATTTGTG
GATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTGCACGTAG
AAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTCG
CAGCTATTGTTATCTGATTTGATTTTCACCTTGAACACATAATTTAGCAGTAATTATATA
CAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4931#0      TTTTTTTTTTTTTTTATTGGTATCTGATTTGATTT-TCACCTTGAACACATAATTTAGCA 59
consensus_4931#1      ----------AGACAAGGGGGAGAGGATTAGAACTGTAATCCTCTCGTTATTAGGCTGCA 50
                                     *  ** *   **** **  * * * * *      ** *    ***

consensus_4931#0      GTAATTATATACAGTCCAACTTTGTTCTTCCTCTCAGGCAAGGGTGCCAACCAAACAAGT 119
consensus_4931#1      CGACGCTGCCACAG-CCACCGTCGTGTCAGACTCTACACAAAGCCGTCG--CAGCC---T 104
                        *       **** *** * * **          *  *** *  * *   **  *   *

consensus_4931#0      GTAGTCCCAGCAGCCTGACCAAGCAATTTTCATCTACTTCTTCTATGCCTCCCAGGCGTG 179
consensus_4931#1      GCAGCCGTNGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCC------GCTCC 158
                      * ** *   ** * *   * ****   *  *  *  ** *     ****      **   

consensus_4931#0      CAAAATTTTCAGGCATGGGACTCAGGGCACCAACCAAACAGGCCCTTTCCCCAATTGATA 239
consensus_4931#1      CATNGTCGTGAG--AAGCCACTTCGAATCCCGTCGTCTTTGCTGCTTCACTAGATCTGAT 216
                      **   *  * **  * *  ***  *    **  *      *   ***  *   **     

consensus_4931#0      AGCATGCGATCAAGAACACGGCACGAAATGAACAAACTCAGCAGCCAGACAGCAACAAGA 299
consensus_4931#1      TGTCCTCATGAAGGAGCTCTGCCCCTT-TGCTGGATCTTGCCGTTGTGTGAAGAGGGAAG 275
                       *    *    * ** * * ** *    **    * **   *     *  *  *   *  

consensus_4931#0      CAACAAATACATCACACGT-CTTCAGCACTTCTAGCTTCCTCTTCCATTTATTGATTTAT 358
consensus_4931#1      AAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCATGGATTTGAGAT--TTCCTTCCT 333
                       * *      ***   * * ***       * * ** *    **    *  **  **  *

consensus_4931#0      TCACATTTGTGGACAAACCATCATTAGCCAATTTCCGAGCAAAAACACAAACTTTCTGCA 418
consensus_4931#1      CCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTT--- 390
                       *   * * *       ** *   * *     * * * *   *       *** * *   

consensus_4931#0      GAACTCTCGCCTTCCAAATGTTGCACCAAAATTGCCGATTATCATCAAGGTCTCTTTCAG 478
consensus_4931#1      ---TTCTCCCCTTCTTGATGGCGT---GGATTTGTGGATT-TCTTTCTCTTTTTTTCCAT 443
                          **** *****   ***  *      * ***  **** ** *     * * ** ** 

consensus_4931#0      ATGCATTGCTAAGTCTGTCCGCACCAT--GAACAGAGTTTCCCACTTCTCTGATTTTCTC 536
consensus_4931#1      CTTGATGAATGCAGCGATGCATATAATTTGCACGTAGAAGGCTGTTTGGTAGATGAATCT 503
                       *  **   *    *  * *  *  **  * **  **    *   **    ***      

consensus_4931#0      AAACTGTCAAGCAATGTAAGCACAAAACACCTTTTTTTTGGATAGTGGATAAGAATCCGG 596
consensus_4931#1      ATA-TGGAAGGCGATGCTATTGTGATCCGACGCGTTCGCAGCTATTGTTATCTGATTTGA 562
                      * * **  * ** ***  *     *  *  *   **    * ** **       **  * 

consensus_4931#0      CCTCCATATCCACGAGTGGATATACACGACCAAAGTCACAAAACATCTAGGTCGACATGT 656
consensus_4931#1      TTTTCACCTTGAACACATAATTTAGCAGTAATTATATACAAAAAAA-------------- 608
                        * **  *  *  *    ** **   *     *   ****** *               

consensus_4931#0      TGTTGCAC 664
consensus_4931#1      --------