cluster # 4933

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Oryza sativa
cluster # 4933 cluster # 4933 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4933#0 length = 1029 sequences # 2

consensus_4933#1 length = 443 sequences # 1

consensusID : consensus_4933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1029
fasta sequence

                              [AGACCGATCGCCACAATGGGATTGCTGAGCTGTTGGAGGTGTTTGGGAGTGTGATTAGTGGGTTCGCGAAGCCATTGAAGGAGGAGCATAAGTTGTTCCTGTGGAAGGCGTTAGTTCCTCTTCACAAACCGAAAACGGTGGGCGTGTATCTCCCGCAATTGACGTATTGTATTATACAATTCATCGAGAAGGAACCAAAGCTCGCGGGGACTGTAATCAGAGGCCTACTGAAGTACTGGCCAGTGACGAACAGTCAGAAGGAGATGATGTTCCTTGGGGAGTTGGAGGAGGTGCTGGAATTGACAGAAATGGCTGAGTTCCAGAAGTGCATGGTTCCGCTGTTTCGAAGGATTGCACACTGTCTAAATAGCTCACACTTTCAGGTTGCTGAGAGGGCACTATTCCTGTGGAACAATGAGCACTTGTTTGATTTGATCTCCCAAAATCGCCAAACTATTATGCCGATCATATATCCAGCGCTGGAAAGGAACACTCGTTGGCACTGGAACCAATCAGTTCTAAATGTAACAATGAACGTCCGGAAAATGTTCCTTGAAATGGATGAGGGACTGTTGTTAACTTGTCAGAGGAATTTCCAAGAGGAGGAAGAAAAGCGAGCTGCATCTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAGAGAGAAACGCGTCATTCCGTCCAGTCACCGGAGACATTGGTTTCTCTGTTCTTCCTGCATCTGCTCCCTTGGTAGCACCCACCATGACATAATATGACATGCGTTCGGAATTTCGAATGTACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTTGTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGATTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAATTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGATTTTCTTGGAAAATTTCCAGGTGTA]

[+] EMBL AK102847             [AGACCGATCGCCACAATGGGATTGCTGAGCTGTTGGAGGTGTTTGGGAGTGTGATTAGTGGGTTCGCGAAGCCATTGAAGGAGGAGCATAAGTTGTTCCTGTGGAAGGCGTTAGTTCCTCTTCACAAACCGAAAACGGTGGGCGTGTATCTCCCGCAATTGACGTATTGTATTATACAATTCATCGAGAAGGAACCAAAGCTCGCGGGGACTGTAATCAGAGGCCTACTGAAGTACTGGCCAGTGACGAACAGTCAGAAGGAGATGATGTTCCTTGGGGAGTTGGAGGAGGTGCTGGAATTGACAGAAATGGCTGAGTTCCAGAAGTGCATGGTTCCGCTGTTTCGAAGGATTGCACACTGTCTAAATAGCTCACACTTTCAGGTTGCTGAGAGGGCACTATTCCTGTGGAACAATGAGCACTTGTTTGATTTGATCTCCCAAAATCGCCAAACTATTATGCCGATCATATATCCAGCGCTGGAAAGGAACACTCGTTGGCACTGGAACCAATCAGTTCTAAATGTAACAATGAACGTCCGGAAAATGTTCCTTGAAATGGATGAGGGACTGTTGTTAACTTGTCAGAGGAATTTCCAAGAGGAGGAAGAAAAGCGAGCTGCATCTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAGAGAGAAACGCGTCATTCCGTCCAGTCACCGGAGACATTGGTTTCTCTGTTCTTCCTGCATCTGCTCCCTTGGTAGCACCCACCATGACATAATATGACATGCGTTCGGAATTTCGAATGTACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTTGTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGATTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAATTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTG                          ]
[+] EMBL CB683197             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCCTTTTTATGGATGAGGGACTGTTGTTAACTTGTCAGAGGAATTTCCAAGAGGAGGAAGAAAAGCGAGCTGCATCTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAGAGAGAAACGCGTCATTCCGTCCAGTCACCGGAGACATTGGTTTCTCTGTTCTTCCTGCATCTGCTCCCTTGGTAGCACCCACCATGACATAATATGACATGCGTTCGGAATTTCGAATGTACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTTGTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGATTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAATTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGATTTTCTTGGAAAATTTCCAGGTGTA]




>consensus_4933#0
AGACCGATCGCCACAATGGGATTGCTGAGCTGTTGGAGGTGTTTGGGAGTGTGATTAGTG
GGTTCGCGAAGCCATTGAAGGAGGAGCATAAGTTGTTCCTGTGGAAGGCGTTAGTTCCTC
TTCACAAACCGAAAACGGTGGGCGTGTATCTCCCGCAATTGACGTATTGTATTATACAAT
TCATCGAGAAGGAACCAAAGCTCGCGGGGACTGTAATCAGAGGCCTACTGAAGTACTGGC
CAGTGACGAACAGTCAGAAGGAGATGATGTTCCTTGGGGAGTTGGAGGAGGTGCTGGAAT
TGACAGAAATGGCTGAGTTCCAGAAGTGCATGGTTCCGCTGTTTCGAAGGATTGCACACT
GTCTAAATAGCTCACACTTTCAGGTTGCTGAGAGGGCACTATTCCTGTGGAACAATGAGC
ACTTGTTTGATTTGATCTCCCAAAATCGCCAAACTATTATGCCGATCATATATCCAGCGC
TGGAAAGGAACACTCGTTGGCACTGGAACCAATCAGTTCTAAATGTAACAATGAACGTCC
GGAAAATGTTCCTTGAAATGGATGAGGGACTGTTGTTAACTTGTCAGAGGAATTTCCAAG
AGGAGGAAGAAAAGCGAGCTGCATCTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAG
AGAGAAACGCGTCATTCCGTCCAGTCACCGGAGACATTGGTTTCTCTGTTCTTCCTGCAT
CTGCTCCCTTGGTAGCACCCACCATGACATAATATGACATGCGTTCGGAATTTCGAATGT
ACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTT
GTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGA
TTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAA
TTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGATTTTCTTGGAAAATTT
CCAGGTGTA

consensusID : consensus_4933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [AGAGGACGAGACAAGGGGAGGAAGAAAAGCGAGCTGCATTTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAGAGAGAAACGCGTCATTCCGTCCAGTAACCGGAGACATTGGTTTCTCTGTTCTTCCTGCATCTGCTCCCTTGGTAGCACCCCCCATGACATAATATGACATGCGTTTGGAATTTCGAGTGTACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTTGTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGATTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAATTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGATTTTCTTGGAAAAAAAAAAAAAAA]

[-] EMBL CA760843             [AGAGGACGAGACAAGGGGAGGAAGAAAAGCGAGCTGCATTTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAGAGAGAAACGCGTCATTCCGTCCAGTAACCGGAGACATTGGTTTCTCTGTTCTTCCTGCATCTGCTCCCTTGGTAGCACCCCCCATGACATAATATGACATGCGTTTGGAATTTCGAGTGTACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTTGTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGATTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAATTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGATTTTCTTGGAAAAAAAAAAAAAAA]




>consensus_4933#1
AGAGGACGAGACAAGGGGAGGAAGAAAAGCGAGCTGCATTTGAGGAGCGGAGAAAGCTTA
TATGGGAGAACCTAGAGAGAAACGCGTCATTCCGTCCAGTAACCGGAGACATTGGTTTCT
CTGTTCTTCCTGCATCTGCTCCCTTGGTAGCACCCCCCATGACATAATATGACATGCGTT
TGGAATTTCGAGTGTACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGG
CATTTTGTTATATTTGTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTG
AGGATGAACTTGTGATTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGA
GAAGATAATGTCCAATTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGAT
TTTCTTGGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4933#0      AGACCGATCGCCACAATGGGATTGCTGAGCTGTTGGAGGTGTTTGGGAGTGTGATTAGTG 60
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      GGTTCGCGAAGCCATTGAAGGAGGAGCATAAGTTGTTCCTGTGGAAGGCGTTAGTTCCTC 120
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      TTCACAAACCGAAAACGGTGGGCGTGTATCTCCCGCAATTGACGTATTGTATTATACAAT 180
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      TCATCGAGAAGGAACCAAAGCTCGCGGGGACTGTAATCAGAGGCCTACTGAAGTACTGGC 240
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      CAGTGACGAACAGTCAGAAGGAGATGATGTTCCTTGGGGAGTTGGAGGAGGTGCTGGAAT 300
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      TGACAGAAATGGCTGAGTTCCAGAAGTGCATGGTTCCGCTGTTTCGAAGGATTGCACACT 360
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      GTCTAAATAGCTCACACTTTCAGGTTGCTGAGAGGGCACTATTCCTGTGGAACAATGAGC 420
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      ACTTGTTTGATTTGATCTCCCAAAATCGCCAAACTATTATGCCGATCATATATCCAGCGC 480
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      TGGAAAGGAACACTCGTTGGCACTGGAACCAATCAGTTCTAAATGTAACAATGAACGTCC 540
consensus_4933#1      ------------------------------------------------------------
                                                                                  

consensus_4933#0      GGAAAATGTTCCTTGAAATGGATGAGGGACTGTTGTTAACTTGTCAGAGGAATTTCCAAG 600
consensus_4933#1      ---------------------------------------------AGAGGACGAGACAAG 15
                                                                   ******     ****

consensus_4933#0      AGGAGGAAGAAAAGCGAGCTGCATCTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAG 660
consensus_4933#1      GGGAGGAAGAAAAGCGAGCTGCATTTGAGGAGCGGAGAAAGCTTATATGGGAGAACCTAG 75
                       *********************** ***********************************

consensus_4933#0      AGAGAAACGCGTCATTCCGTCCAGTCACCGGAGACATTGGTTTCTCTGTTCTTCCTGCAT 720
consensus_4933#1      AGAGAAACGCGTCATTCCGTCCAGTAACCGGAGACATTGGTTTCTCTGTTCTTCCTGCAT 135
                      ************************* **********************************

consensus_4933#0      CTGCTCCCTTGGTAGCACCCACCATGACATAATATGACATGCGTTCGGAATTTCGAATGT 780
consensus_4933#1      CTGCTCCCTTGGTAGCACCCCCCATGACATAATATGACATGCGTTTGGAATTTCGAGTGT 195
                      ******************** ************************ ********** ***

consensus_4933#0      ACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTT 840
consensus_4933#1      ACTTCGGTTCATTTCATTGTTAGCTTGTATGGGTTATGTGCAGGGCATTTTGTTATATTT 255
                      ************************************************************

consensus_4933#0      GTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGA 900
consensus_4933#1      GTAAGCCCCTTGTGCTCAAGTCTGTAATTAATAGTTATTGGTTTGAGGATGAACTTGTGA 315
                      ************************************************************

consensus_4933#0      TTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAA 960
consensus_4933#1      TTCTTTAATGGTGTACTCTCTAGTGATGGACATTTCTCTGTTTGAGAAGATAATGTCCAA 375
                      ************************************************************

consensus_4933#0      TTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGATTTTCTTGGAAAATTT 1020
consensus_4933#1      TTAAACCCGACTGCTCTGTGAACAACTGAGGATACTGAGATTGATTTTCTTGGAAAAAAA 435
                      *********************************************************   

consensus_4933#0      CCAGGTGTA 1029
consensus_4933#1      AAAAAAAA- 443
                        *