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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1403 fasta sequence
[CCGTATCCAATGGCAGTCTCCTCTTTGGCCTTCGCTAGAGTCCTCGTCCCGCCATCTCCAAGAACAGCATTAGCTTCGGCTTGCTCCCATTCTATCAAGATGTGCGCTTCTTCAGCCTCACCGTCGGAGTCAAAGAAGACCGTCTGGGTGTGGACAACAAATCGGCAGGTGATGACGGCAGCCGTGGAGAGGGGCTGGAGCACTTTCCTCTTTGGATCCAAAGATCTTGGCAAGGATTGGTCATCTACTGCTCGCATCAATCCTCTTTTTATCGATGGCCTGGAGATATTCGATGAGAAAAAACAAAAGATTGCTGTAATTTCTGAAGTCTCTTCCCCAGGAGAGCTGGAACTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATGATATTATCAAACTCAAGGATTATTTTGACAGAAGGAACGAGGCAAAGAGCCAGTTAATGTTGACAAAGGCTACTGTGTCAAAGGTTGAAGTTGTTGGTATGGGTGATCGTGTTTGTGTGGATCTTTGCAGTATGATGCGACCTGGTGAAGGCCTTCTGGTTGGCTCCTATGCAAGAGGAATGTTTCTTGTTCACTCTGAATGCCTGGAGACAAATTATATTGCAAGCAGGCCTTTCAGGGTCAATGCGGGCCCTGTTCATGCATATGTTGCAGTCCCTGGTGGCCGAACTAGTTACCTCTCAGAGCTGCAATCAGGTCGGGAAGTAATAGTTGTTGATCAAAATGGTTTGTGGCGTACTGCGATTGTTGGTCGTGTTAAGATTGAATCAAGGCCTCTAATCCTTGTAGAAGCAAAGGAGAACGGTGGAGATGATACTTACAGCATTTTCCTGCAAAATGCCGAGACAGTTGCACTTATCACTCCTGAAAAAGGATCTAGTGGAAGAACTGCTATACCTGTGACTTCACTGAAAGTTGGTGATGAGGTTTTGGTGAGGAAACAGGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTGAGAAATGAGACTGC-GTCAGTTATTC-AGTTACCTGCTAGCAGG-CCAGTCTTTGTTCTTC-CCAAACAATTCTTTTGCTAATTC-ATGGGAGTGAAAATTCAC-ACCAACTTATGATA-GGGGACTATCTGAATCATCATTGAATTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGAGGAAATTTCCATTTGGATGTNAAAAAAAAAAAAAAA]
[+] EMBL AK067530 [CCGTATCCAATGGCAGTCTCCTCTTTGGCCTTCGCTAGAGTCCTCGTCCCGCCATCTCCAAGAACAGCATTAGCTTCGGCTTGCTCCCATTCTATCAAGATGTGCGCTTCTTCAGCCTCACCGTCGGAGTCAAAGAAGACCGTCTGGGTGTGGACAACAAATCGGCAGGTGATGACGGCAGCCGTGGAGAGGGGCTGGAGCACTTTCCTCTTTGGATCCAAAGATCTTGGCAAGGATTGGTCATCTACTGCTCGCATCAATCCTCTTTTTATCGATGGCCTGGAGATATTCGATGAGAAAAAACAAAAGATTGCTGTAATTTCTGAAGTCTCTTCCCCAGGAGAGCTGGAACTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATGATATTATCAAACTCAAGGATTATTTTGACAGAAGGAACGAGGCAAAGAGCCAGTTAATGTTGACAAAGGCTACTGTGTCAAAGGTTGAAGTTGTTGGTATGGGTGATCGTGTTTGTGTGGATCTTTGCAGTATGATGCGACCTGGTGAAGGCCTTCTGGTTGGCTCCTATGCAAGAGGAATGTTTCTTGTTCACTCTGAATGCCTGGAGACAAATTATATTGCAAGCAGGCCTTTCAGGGTCAATGCGGGCCCTGTTCATGCATATGTTGCAGTCCCTGGTGGCCGAACTAGTTACCTCTCAGAGCTGCAATCAGGTCGGGAAGTAATAGTTGTTGATCAAAATGGTTTGTGGCGTACTGCGATTGTTGGTCGTGTTAAGATTGAATCAAGGCCTCTAATCCTTGTAGAAGCAAAGGAGAACGGTGGAGATGATACTTACAGCATTTTCCTGCAAAATGCCGAGACAGTTGCACTTATCACTCCTGAAAAAGGATCTAGTGGAAGAACTGCTATACCTGTGACTTCACTGAAAGTTGGTGATGAGGTTTTGGTGAGGAAACAGGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTGAGAAATGAGACTGC GTCAGTTATTC AGTTACCTGCTAGCAGG CCAGTCTTTGTTCTTC CCAAACAATTCTTTTGCTAATTC ATGGGAGTGAAAATTCAC ACCAACTTATGATA GGGGACTATCTGAATCATCATTGAATTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGAGGAAATTTCCA ]
[+] EMBL AU166453 [ GAAGCAAAGGAGAACGGTGGAGATGANACTTNCAGCATTTTCCTGCAAAANGCCGAGACAGTTGCACTTATCACTCCTNAAAAAGGATCTAGTGGAAGAACTGCTANACCTGTGACTTCACTNAAAGTTGGTGATGAGGTTTTGGTGAGGAAACAGGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTNAGAAATGAGACTGCGGCCAGTTATTCNAGTTACCTGCTAGCAGGCCCAGTCTTTGTTCTTCNCCCAACAATTCTTTTGCTAATTCNATGGGAGTGAAAATTCCCNCCCCACTTATGATAGGGGGNCTATTTGAATCATCATTGAANTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGAGGGAATTTCCNTTTGGATGTNAAAAAAAAAAAAAAA]
consensusID : consensus_4983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[CTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTAGATATTCGAATATTGGACTATCAGCAAATTACTTCCATGACATATGAATTAATTTCAATTGTCATAGTGAGATAAGTCATCATACTTGCATTTTTGTAATGCATTCTATGCTGTTTAGTCATCTTGAGTGTCTTTTTGTTTGTGTGAATAGCTTATTTGAATTCCATCAATGGTTTGAATGAGTGTCCAGTATACGTTTTTTCTGTGTTGTTAGGATCATTGGCTTGACATGCTGTACTGTTTCATATTTGAGCCGCAACTTGCAAAGTACACTTGACAAAACCCAACAAGCGTTAACAGGTGCCTCCTTTGTCCTCCTGAATTTCGTAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGTAACTGTCAAGATGTTTCAACATACAATAGAAGTTCCTGTGTATAATGATGTATCGTGTTCCTATCAATTATCTTTTGTGAAGTTGTTCCCCCAGTTACTTAGTTACTTTACAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATG]
[-] EMBL CA998193 [CTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGATGGCAGGTTAGATATTCGAATATTGGACTATCAGCAAATTACTTCCATGACATATGAATTAATTTCAATTGTCATAGTGAGATAAGTCATCATACTTGCATTTTTGTAATGCATTCTATGCTGTTTAGTCATCTTGAGTGTCTTTTTGTTTGTGTGAATAGCTTATTTGAATTCCATCAATGGTTTGAATGAGTGTCCAGTATACGTTTTTTCTGTGTTGTTAGGATCATTGGCTTGACATGCTGTACTGTTTCATATTTGAGCCGCAACTTGCAAAGTACACTTGACAAAACCCAACAAGCGTTAACAGGTGCCTCCTTTGTCCTCCTGAATTTCGTAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTATTGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGTAACTGTCAAGATGTTTCAACATACAATAGAAGTTCCTGTGTATAATGATGTATCGTGTTCCTATCAATTATCTTTTGTGAAGTTGTTCCCCCAGTTACTTAGTTACTTTACAGGCCTTGGAGCAAGGGCTTGATGGAGTTATACTTAAAGTAGAGGACATGGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4983#0 CCGTATCCAATGGCAGTCTCCTCTTTGGCCTTCGCTAGAGTCCTCGTCCCGCCATCTCCA 60
consensus_4983#1 ------CTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAG----ACTTCCG 50
* ** * * * *** * * * ** * * * ***
consensus_4983#0 AGAACAGCATTAGCTTCGGCTTGCTCCCATT---CTATCAAGATGTGCGCTTCTTCAGCC 117
consensus_4983#1 AGGTGGATGGCAGGTTAGATATTCGAATATTGGACTATCAGCAAAT-TACTTCCATGACA 109
** ** ** * * * *** ****** * * **** *
consensus_4983#0 TCACCGTCGGAGTCAAAGAAGACCGTCTGGGTGTGGACAACAAATCGGCAGGTG-ATGAC 176
consensus_4983#1 TATGAATTAATTTCAATTGTCATAG--TGAGATAAGTCATCATACTTGCATTTTTGTAAT 167
* * **** * * ** * * ** ** * *** * * *
consensus_4983#0 GGCAGCCGTGGAGAGGGG----CTGGAGCACTTTCCTCTTTGGATCCAAAGATCTTGGCA 232
consensus_4983#1 GCATTCTATGCTGTTTAGTCATCTTGAGTGTCTTTTTGTTTG--TGTGAATAGCTTATTT 225
* * ** * * ** *** ** * **** * ** * ***
consensus_4983#0 AGGATTGGTCATCTACTGCTCGCATCAATCCTCTTTTTATCGATGGCCTGGAGATATTCG 292
consensus_4983#1 -GAATT--CCATCAATGGTTTGAATGAGTGTCCAGTATA-CGTTTTTTCTGTGTTGTTAG 281
* *** **** * * * * ** * * * * ** ** * * * * ** *
consensus_4983#0 ATGAGAAAAAACAAAAGATTGCTGTAATTTCTGAAGTCTCTTCCCCAG---GAGAGCTGG 349
consensus_4983#1 --GATCATTGGCTTGACAT-GCTGTACTGTTTCATATTTGAGCCGCAACTTGCAAAGTAC 338
** * * * ** ****** * * * * * * ** ** * * *
consensus_4983#0 AACTCATACAACCAGACAATGTGGAAGTGGAAAACATCGTGATAGACTTCCGAGGTGGAT 409
consensus_4983#1 ACTTGACAAAACCCAACAA-GCGTTAACAGGTGCCTCCTTTGTC--CTCCTGAATT---T 392
* * * * **** **** * * * * * * * * ** * ** * *
consensus_4983#0 GGCAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTAT 469
consensus_4983#1 CGTAGGTTATACCAGCAGAAAATATAGTTGCTGCATTCCAGGGATGTAGAGGAACTGTAT 452
* *********************************************************
consensus_4983#0 TGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGCCTTGGAGCAAGGGC 529
consensus_4983#1 TGGCTGTTTCAACAAACTCAACTGAGGCTCAGGTTTTTCTTGAGGTAACTGTCAAGATGT 512
********************************************* * * *
consensus_4983#0 TTGATGGAGTTATACTTAAAGTAGAGGACATGGATGATATTATCAAACTC--AAGGATTA 587
consensus_4983#1 TTCA---ACATACAATAGAAGTTCCTGTGTATAATGATGT-ATCGTGTTCCTATCAATTA 568
** * * ** * * **** * ***** * *** ** * ****
consensus_4983#0 TTTTGACAGAAGGAACGAGGCAAAGAGCCAGTTAATGTTGACAAAGGCTACTGTGTCAAA 647
consensus_4983#1 TCTTTTGTGAAG---TTGTTCCCCCAGTTACTTAGTTACTTTACAGGCCTTGGAGCAAGG 625
* ** **** * ** * *** * * **** * * *
consensus_4983#0 GGTTGAAGTTGTTGGTATGGGTGATCGTGTTTGTGTGGATCTTTGCAGTATGATGCGACC 707
consensus_4983#1 GCTTGA---TGGAGTTATACTTAAAGTAGAGGACATGGATG------------------- 663
* **** ** * *** * * * *****
consensus_4983#0 TGGTGAAGGCCTTCTGGTTGGCTCCTATGCAAGAGGAATGTTTCTTGTTCACTCTGAATG 767
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 CCTGGAGACAAATTATATTGCAAGCAGGCCTTTCAGGGTCAATGCGGGCCCTGTTCATGC 827
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 ATATGTTGCAGTCCCTGGTGGCCGAACTAGTTACCTCTCAGAGCTGCAATCAGGTCGGGA 887
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 AGTAATAGTTGTTGATCAAAATGGTTTGTGGCGTACTGCGATTGTTGGTCGTGTTAAGAT 947
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 TGAATCAAGGCCTCTAATCCTTGTAGAAGCAAAGGAGAACGGTGGAGATGATACTTACAG 1007
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 CATTTTCCTGCAAAATGCCGAGACAGTTGCACTTATCACTCCTGAAAAAGGATCTAGTGG 1067
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 AAGAACTGCTATACCTGTGACTTCACTGAAAGTTGGTGATGAGGTTTTGGTGAGGAAACA 1127
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 GGGCGGTGCCCGTCACACTGGAATAGAGATTCAGGAGTTTATTGTTGAGAAATGAGACTG 1187
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 CGTCAGTTATTCAGTTACCTGCTAGCAGGCCAGTCTTTGTTCTTCCCAAACAATTCTTTT 1247
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 GCTAATTCATGGGAGTGAAAATTCACACCAACTTATGATAGGGGACTATCTGAATCATCA 1307
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 TTGAATTCGAGCCATGTACATCTGTATATACTATAGTACTAGTAACTTTTAAGTCAAGGA 1367
consensus_4983#1 ------------------------------------------------------------
consensus_4983#0 GGAAATTTCCATTTGGATGTNAAAAAAAAAAAAAAA 1403
consensus_4983#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||