cluster # 5015

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Oryza sativa
cluster # 5015 cluster # 5015 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5015#0 length = 920 sequences # 1

consensus_5015#1 length = 821 sequences # 1
consensus_5015#2 length = 158 sequences # 1

consensusID : consensus_5015#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 920
fasta sequence

                              [CCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTTGTTCTTTCTGCATGCTTTGTATTCCTTTCAGCAATGCGCTCCATGTTGGAATGCAAGAAGGCAGCAGAATCTCTTGAGAAGTCCTTCGGTTCAGCAAGAGAGAAGCTTCCTGAAACCATGGCTTCAGTGAAACTAGTTGGAAGGGAGATCTGTGACTTGGCTGTGGATCTCAGTAATCTAAGTCAAGAATTGAGGAAGGGCGTCCAAAGTTCCATGAGCGTTGTTCATGCAGCCGATGCTCAACTGCACCAACTGACGACCTCTGCCCCACAAGGAAATCAGAGGGTGACTAGTAATCGAAAGAGAGCAGCAGGAGAGCCTTTGCTCGCTAGTACCGTGAGAGAACTCCGTGAGTTAATTGCAGAATTACACTCAGGATTTGGAGTAGCCGTCAGCATCGCGGGCCTTTTAACGTGGGCATCAAATTTTGTTTCTAAGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGCCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAATTATGATGAGTTCATGGATTATGAAGATTGGCTTTCAAATGAAAAT]

[+] EMBL AK109268             [CCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTTGTTCTTTCTGCATGCTTTGTATTCCTTTCAGCAATGCGCTCCATGTTGGAATGCAAGAAGGCAGCAGAATCTCTTGAGAAGTCCTTCGGTTCAGCAAGAGAGAAGCTTCCTGAAACCATGGCTTCAGTGAAACTAGTTGGAAGGGAGATCTGTGACTTGGCTGTGGATCTCAGTAATCTAAGTCAAGAATTGAGGAAGGGCGTCCAAAGTTCCATGAGCGTTGTTCATGCAGCCGATGCTCAACTGCACCAACTGACGACCTCTGCCCCACAAGGAAATCAGAGGGTGACTAGTAATCGAAAGAGAGCAGCAGGAGAGCCTTTGCTCGCTAGTACCGTGAGAGAACTCCGTGAGTTAATTGCAGAATTACACTCAGGATTTGGAGTAGCCGTCAGCATCGCGGGCCTTTTAACGTGGGCATCAAATTTTGTTTCTAAGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGCCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAATTATGATGAGTTCATGGATTATGAAGATTGGCTTTCAAATGAAAAT]




>consensus_5015#0
CCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCA
AGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGG
CCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTC
CCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCG
CCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTC
CGCGGTTGTTCTTTCTGCATGCTTTGTATTCCTTTCAGCAATGCGCTCCATGTTGGAATG
CAAGAAGGCAGCAGAATCTCTTGAGAAGTCCTTCGGTTCAGCAAGAGAGAAGCTTCCTGA
AACCATGGCTTCAGTGAAACTAGTTGGAAGGGAGATCTGTGACTTGGCTGTGGATCTCAG
TAATCTAAGTCAAGAATTGAGGAAGGGCGTCCAAAGTTCCATGAGCGTTGTTCATGCAGC
CGATGCTCAACTGCACCAACTGACGACCTCTGCCCCACAAGGAAATCAGAGGGTGACTAG
TAATCGAAAGAGAGCAGCAGGAGAGCCTTTGCTCGCTAGTACCGTGAGAGAACTCCGTGA
GTTAATTGCAGAATTACACTCAGGATTTGGAGTAGCCGTCAGCATCGCGGGCCTTTTAAC
GTGGGCATCAAATTTTGTTTCTAAGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAG
TAGATAGAGGCCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAA
GTTAGATCATGATCATTTATCCTGGGTTCATGAATTATGATGAGTTCATGGATTATGAAG
ATTGGCTTTCAAATGAAAAT

consensusID : consensus_5015#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 821
fasta sequence

                              [CCAGATATATGGTTTTATGGTTCGAGGACGATTTTGTAACTCATGACAAGTTGAGATACCTTCGATGGAGTACTTTATTTTCCTTTCAGTTTCCACCCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTACGGCCCCCCTTGCTCCCAACCCTCACACATCTCATATCGCCTTCTCAATCCAGCGACATGACACTGGGGTAGCCTCCGGTAGCGATGGCAGCATGACGGCGTTGCTGCTTTGAAGGCGCAAGATTGATATGCGTAACGTGGTTTTGAAAGCGGGTTCTTGGCCAGCTTTTGCATCTGTGGATGGATGGATACTCTCTCCCCCCTGTGAAGAGTAAACAGCGGGTGGAACTGAAAACTTATCTGAATCGAAACTCATGATATGCTTTTAAGCTGTCGGTTTTGAATATGAATTAGAAACTGAAATGCCAATGAAACAGCATAATGTGATAAGGGTTTAAGGTTGGTTTTTCCACTCTATTTGAATCTATTATTTAGTACTAGTATCACATGTCTACCAAAAACAAAAAAGTTCTCCATT]

[+] EMBL AK108638             [CCAGATATATGGTTTTATGGTTCGAGGACGATTTTGTAACTCATGACAAGTTGAGATACCTTCGATGGAGTACTTTATTTTCCTTTCAGTTTCCACCCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTACGGCCCCCCTTGCTCCCAACCCTCACACATCTCATATCGCCTTCTCAATCCAGCGACATGACACTGGGGTAGCCTCCGGTAGCGATGGCAGCATGACGGCGTTGCTGCTTTGAAGGCGCAAGATTGATATGCGTAACGTGGTTTTGAAAGCGGGTTCTTGGCCAGCTTTTGCATCTGTGGATGGATGGATACTCTCTCCCCCCTGTGAAGAGTAAACAGCGGGTGGAACTGAAAACTTATCTGAATCGAAACTCATGATATGCTTTTAAGCTGTCGGTTTTGAATATGAATTAGAAACTGAAATGCCAATGAAACAGCATAATGTGATAAGGGTTTAAGGTTGGTTTTTCCACTCTATTTGAATCTATTATTTAGTACTAGTATCACATGTCTACCAAAAACAAAAAAGTTCTCCATT]




>consensus_5015#1
CCAGATATATGGTTTTATGGTTCGAGGACGATTTTGTAACTCATGACAAGTTGAGATACC
TTCGATGGAGTACTTTATTTTCCTTTCAGTTTCCACCCGAGCCAAACTCTCGCTCCAACG
GAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGC
CTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTA
CTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCG
CTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGA
CGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTCCGCGGTACGGCCCCCCTTGCTCCC
AACCCTCACACATCTCATATCGCCTTCTCAATCCAGCGACATGACACTGGGGTAGCCTCC
GGTAGCGATGGCAGCATGACGGCGTTGCTGCTTTGAAGGCGCAAGATTGATATGCGTAAC
GTGGTTTTGAAAGCGGGTTCTTGGCCAGCTTTTGCATCTGTGGATGGATGGATACTCTCT
CCCCCCTGTGAAGAGTAAACAGCGGGTGGAACTGAAAACTTATCTGAATCGAAACTCATG
ATATGCTTTTAAGCTGTCGGTTTTGAATATGAATTAGAAACTGAAATGCCAATGAAACAG
CATAATGTGATAAGGGTTTAAGGTTGGTTTTTCCACTCTATTTGAATCTATTATTTAGTA
CTAGTATCACATGTCTACCAAAAACAAAAAAGTTCTCCATT

consensusID : consensus_5015#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [AGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGTCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAANAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF333532             [AGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGTCATGAGGGCTTCTGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAANAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5015#2
AGCGTCCTAAGAATCGCTCATAGCGAGACACAGAAAGTAGATAGAGGTCATGAGGGCTTC
TGGCCGGTGTAAGTGATACTGAATCATTTTGCTTGAAGTTAGATCATGATCATTTATCCT
GGGTTCATGAANAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5015#0      CCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCTCGCCACACCCA 60
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      AGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGCCGCCGGCGCGG 120
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      -----------------------------------CCAGATATATGGTTTTATGGTTCGA 25
                                                                                  

consensus_5015#0      CCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTCGTGTTCGCCTC 180
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      GGACGATTTTGTAACTCATGACAAGTTGAGATACCTTCGATGGAGTACTTTATTTTCCTT 85
                                                                                  

consensus_5015#0      CCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCCTCCTCCCCGCG 240
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      TCAGTTTCCACCCGAGCCAAACTCTCGCTCCAACGGAAAATGCCGTCTGCTCTTCCTCCT 145
                                                                                  

consensus_5015#0      CCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACCGTCGCTGCGTC 300
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      CGCCACACCCAAGCTCCCGCGCCGCCGGCCGCCGCCTCCGCCTCCGCCTGCCTCCTCCGC 205
                                                                                  

consensus_5015#0      CGCGGTTGTTCTTTCTGCATGCTTTGTATTCCTTTCAGCAATGCGCTCCATGTTGGAATG 360
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      CGCCGGCGCGGCCGACTCCGTGTCAGCCTCTGTTACTGCAGAGCCTCCACGGAGCCTCTC 265
                                                                                  

consensus_5015#0      CAAGAAGGCAGCAGAATCTCTTGAGAAGTCCTTCGGTTCAGCAAGAGAGAAGCTTCCTGA 420
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      GTGTTCGCCTCCCCGAGCTCTCCGTCGCTCCTCCGCTCCTCCGTTGCCGTCCCCGTCCCC 325
                                                                                  

consensus_5015#0      AACCATGGCTTCAGTGAAACTAGTTGGAAGGGAGATCTGTGACTTGGCTGTGGATCTCAG 480
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      TCCTCCCCGCGCCACGCAAATCGGGGGCCGGGAGACGGCGGCGGCCTCCTGGTAGTCACC 385
                                                                                  

consensus_5015#0      TAATCTAAGTCAAGAATTGAGGAAGGGCGTCCAAAGTTCCATGAGCGTTGTTCATGCAGC 540
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      GTCGCTGCGTCCGCGGTACGGCCCCCCTTGCTCCCAACCCTCACACATCTCATATCGCCT 445
                                                                                  

consensus_5015#0      CGATGCTCAACTGCACCAACTGACGACCTCTGCCCCACAAGGAAATCAGAGGGTGACTAG 600
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      TCTCAATCCAGCGACATGACACTGGGGTAGCCTCCGGTAGCGATGGCAGCATGACGGCGT 505
                                                                                  

consensus_5015#0      TAATCGAAAGAGAGCAGCAGGAGAGCCTTTGCTCGCTAGTACCGTGAGAGAACTCCGTGA 660
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      TGCTGCTTTGAAGGCGCAAGATTGATATGCGTAACGTGGTTTTGAAAGCGGGTTCTTGGC 565
                                                                                  

consensus_5015#0      -GTTAATTGCAGAATTACACTCAGGATTTGGAGTAGCCGTCAGCATCGCGGGCCTTTTAA 719
consensus_5015#2      ------------------------------------------------------------
consensus_5015#1      CAGCTTTTGCATCTGTGGATGGATGGATACTCTCTCCCCCCTGTGAAGAGTAAACAGCGG 625
                                                                                  

consensus_5015#0      CGTGGGCATCAAATTTTGTTTCTAAGCGTCCTAAGAATCGCTCATA----GCGAGACACA 775
consensus_5015#2      ------------------------AGCGTCCTAAGAATCGCTCATA----GCGAGACACA 32
consensus_5015#1      GTGGAACTGAAAACTTATCTGAATCGAAACTCATGATATGCTTTTAAGCTGTCGGTTTTG 685
                                               *   *  * **   ***  **    *   *     

consensus_5015#0      GAAAGTAGATAGAGGCCATGAGGGCTTCTGGCCGGTGTAA-GTGATACTGAATCA---TT 831
consensus_5015#2      GAAAGTAGATAGAGGTCATGAGGGCTTCTGGCCGGTGTAA-GTGATACTGAATCA---TT 88
consensus_5015#1      AATATGAATTAGAAACTGAAATGCCAATGAAACAGCATAATGTGATAAGGGTTTAAGGTT 745
                       * *  *  ****       * * *       * *  *** ******  *  * *   **

consensus_5015#0      TTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAATTATGATGAGTTCATGG 891
consensus_5015#2      TTGCTTGAAGTTAGATCATGATCATTTATCCTGGGTTCATGAANAAAAAAAAAAAAAAAA 148
consensus_5015#1      GGTTTTTCCACTCTATTTGAATCTATTATTTAGTACTAGTATCACATGTCTACCAAAAAC 805
                          **     *  **    ***  ****   *   *  *     *     *    *   

consensus_5015#0      ATTATGAAGATTGGCTTTCAAATGAAAAT 920
consensus_5015#2      AAAAAAAAAA------------------- 158
consensus_5015#1      AAAAAAGTTCTCCATT------------- 821
                      *  *