cluster # 5017

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Oryza sativa
cluster # 5017 cluster # 5017 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5017#0 length = 1856 sequences # 3
consensusID : consensus_5017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1856
fasta sequence
                              [TCATCGTCGGCTCCACTTCCACTTCCTCTTCCTCCTCCTCGAGGACGAGGAGGAAATTGGCAGCTGGAGGCTTGGAGCGCGCTGCATCATCCCGCCCGCCCTGCTGCTGCGGCGATCGCCGGAGCAGGGCTGCAGGGGATCCCCACGGCCGCAGCAGCTGTTGTTATCTGATTCTGTGTGGGGATGGAGGTGGTTCTGCATGAGGGGGATGCCAAAGATTGGGTTTACAAAGGAGAAGGTGCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTGCGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCAAGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGATTGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATG-TTGATGGCGGGGTCCGTGTACGTGTGTCTAAGAACTTTTT-CGAGC-TTGCT-GGAAAGAATGTGCTTGACAACCGTCCTGCAT-GGAGAGTGAATGCTAGTGCAATTGATG-CTGGAGCTGATTCTGCTCTTCTAATTTCTGACCACACATTATTTTCCGGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAGGCAAAATGTGGATTTCTTCCGTCATCTGAATACATATCGAAGGAGAATTCTATCAAGAAACAAGTAACACGGTATAAGATGCATCAGCACCTAAAATTTCATCTGGGAGAGATATCGAAGACAAGTGAATACGATCCCCTAGATTTATTTTCTGGATCAAAAGAAAGAATACATATGGCTATCAAGTCATTTTTTTCAACTCCTCAGAACAACTTTAGAATTTTTGTGGATGGTTCTTTAGTTTTTGGTGGCATGGGAGGTGGCGCAGATAGTGTTCATCCTAATGAAACAGAGAAATGTCTTGAAGATCTGAGCAAGGTTACTGGCTTACAACTATCTGACTTTATTGAGCTCCTGTCAGAGGCAATCTTTAAGTCTGGAGTGTTGGGTAAACTTTTAGCCACTCAAAAACTGGATGATCATGACATCGAAGGGGCGATTCATCTGTACTATAACATCATTTCTCAGCCTTGTTTGGTATGCAAAAGTATAACTGATACAGAACTTCTGCGCAAGTACTCCACCTTGCATTCTCTTCCATTGGACAAGAGTGAGAAGATTGTCAGGGACTTTCTTATCTCTGCTACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGATTCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAGAAATGGAGAAGTTGGGGGAGATCCACGTGATCCTCCAAAGGGATGTGGCCCTAGGTGACACAAAGGTTCAGCTCCAAAGGTTCAGCTCCAACATTGACGACCTTGAAATATAAAGGGCATAGGACAAGTGTCTGTTGTATCTTGGTGATTGTTGTGTTTCTACAAGTGTGCATGTCCAATGTGCAGGTTCTCCTCCCTTCTAGGGAAAACGTGTAAGAGAGTGGTAGTTGTTGTAGTACATCCTGTATACCGTGTGGTTTGCCTCAGCAGTAGGCCGAATTTTCAGTAGACAAACATTAAGAAGAGTTAATAAACTGTATACTGAGGCATCCACGTTTACCTTGGAAATCTATGATAAATTCCCGTATACTCAGCTTGCTGTGAATCTGTGAT]

[+] EMBL AK102842             [TCATCGTCGGCTCCACTTCCACTTCCTCTTCCTCCTCCTCGAGGACGAGGAGGAAATTGGCAGCTGGAGGCTTGGAGCGCGCTGCATCATCCCGCCCGCCCTGCTGCTGCGGCGATCGCCGGAGCAGGGCTGCAGGGGATCCCCACGGCCGCAGCAGCTGTTGTTATCTGATTCTGTGTGGGGATGGAGGTGGTTCTGCATGAGGGGGATGCCAAAGATTGGGTTTACAAAGGAGAAGGTGCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTGCGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCAAGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGATTGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATG TTGATGGCGGGGTCCGTGTACGTGTGTCTAAGAACTTTTT CGAGC TTGCT GGAAAGAATGTGCTTGACAACCGTCCTGCAT GGAGAGTGAATGCTAGTGCAATTGATG CTGGAGCTGATTCTGCTCTTCTAATTTCTGACCACACATTATTTTCCGGTAATCCTAGAGGAAGCAGTTGCATAGCAGTGGAGATAAAGGCAAAATGTGGATTTCTTCCGTCATCTGAATACATATCGAAGGAGAATTCTATCAAGAAACAAGTAACACGGTATAAGATGCATCAGCACCTAAAATTTCATCTGGGAGAGATATCGAAGACAAGTGAATACGATCCCCTAGATTTATTTTCTGGATCAAAAGAAAGAATACATATGGCTATCAAGTCATTTTTTTCAACTCCTCAGAACAACTTTAGAATTTTTGTGGATGGTTCTTTAGTTTTTGGTGGCATGGGAGGTGGCGCAGATAGTGTTCATCCTAATGAAACAGAGAAATGTCTTGAAGATCTGAGCAAGGTTACTGGCTTACAACTATCTGACTTTATTGAGCTCCTGTCAGAGGCAATCTTTAAGTCTGGAGTGTTGGGTAAACTTTTAGCCACTCAAAAACTGGATGATCATGACATCGAAGGGGCGATTCATCTGTACTATAACATCATTTCTCAGCCTTGTTTGGTATGCAAAAGTATAACTGATACAGAACTTCTGCGCAAGTACTCCACCTTGCATTCTCTTCCATTGGACAAGAGTGAGAAGATTGTCAGGGACTTTCTTATCTCTGCTACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGATTCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAGAAATGGAGAAGTTGGGGGAGATCCACGTGATCCTCCAAAGGGATGTGGCCCTAGGTGACACAAAGGTTCAGCTCCAAAGGTTCAGCTCCAACATTGACGACCTTGAAATATAAAGGGCATAGGACAAGTGTCTGTTGTATCTTGGTGATTGTTGTGTTTCTACAAGTGTGCATGTCCAATGTGCAGGTTCTCCTCCCTTCTAGGGAAAACGTGTAAGAGAGTGGTAGTTGTTGTAGTACATCCTGTATACCGTGTGGTTTGCCTCAGCAGTAGGCCGAATTTTCAGTAGACAAACATTAAGAAGAGTTAATAAACTGTATACTGAGGCATCCACGTTTACCTTGGAAATCTATGATAAATTCCCGTATACTCAGCTTGCTGTGAATCTGTGAT]
[+] EMBL C73039               [                                                                                                                                                                                                                    CAAAGATTGGGTTTACAAAGGAGAAGGTGCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTGCGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCAAGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGATTGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATGTTTGATGGCGGGGTCCGTGTACGTGTGTCTAAGACTTTTTTCCGAGCTTTGCTGGGAAAGAATGTGCTTGAC ACCGTCCTGCATNGGAGAGTG ATGCNAATGCATTTGATGCCTGGA CTGATc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AA750614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGGACTTTCTTATCTCTGCTACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGATTCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATATTTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAAAAGATAGTCAATTTCTACACTAG                                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_5017#0
TCATCGTCGGCTCCACTTCCACTTCCTCTTCCTCCTCCTCGAGGACGAGGAGGAAATTGG
CAGCTGGAGGCTTGGAGCGCGCTGCATCATCCCGCCCGCCCTGCTGCTGCGGCGATCGCC
GGAGCAGGGCTGCAGGGGATCCCCACGGCCGCAGCAGCTGTTGTTATCTGATTCTGTGTG
GGGATGGAGGTGGTTCTGCATGAGGGGGATGCCAAAGATTGGGTTTACAAAGGAGAAGGT
GCAGCGAATCTAATCCTCAGCTACACTGGCTCGTCACCTTCTATGCTTGGCAAGGTTCTG
CGAGTCAAAAAGATTCTAAAAGACAAGGGACAACCGGCACCAAACTGTATAGTCTTCTCA
AGTCATGAGGAACATCTGTGGGGCAAGATCCCAGGATTGTTGGAATCTGTTAAAAATGAT
TGCTTGCCACAAGCCTATGCTACAATTGTTATGAGCCAACATTTGGGTGCCAATCATGTT
GATGGCGGGGTCCGTGTACGTGTGTCTAAGAACTTTTTCGAGCTTGCTGGAAAGAATGTG
CTTGACAACCGTCCTGCATGGAGAGTGAATGCTAGTGCAATTGATGCTGGAGCTGATTCT
GCTCTTCTAATTTCTGACCACACATTATTTTCCGGTAATCCTAGAGGAAGCAGTTGCATA
GCAGTGGAGATAAAGGCAAAATGTGGATTTCTTCCGTCATCTGAATACATATCGAAGGAG
AATTCTATCAAGAAACAAGTAACACGGTATAAGATGCATCAGCACCTAAAATTTCATCTG
GGAGAGATATCGAAGACAAGTGAATACGATCCCCTAGATTTATTTTCTGGATCAAAAGAA
AGAATACATATGGCTATCAAGTCATTTTTTTCAACTCCTCAGAACAACTTTAGAATTTTT
GTGGATGGTTCTTTAGTTTTTGGTGGCATGGGAGGTGGCGCAGATAGTGTTCATCCTAAT
GAAACAGAGAAATGTCTTGAAGATCTGAGCAAGGTTACTGGCTTACAACTATCTGACTTT
ATTGAGCTCCTGTCAGAGGCAATCTTTAAGTCTGGAGTGTTGGGTAAACTTTTAGCCACT
CAAAAACTGGATGATCATGACATCGAAGGGGCGATTCATCTGTACTATAACATCATTTCT
CAGCCTTGTTTGGTATGCAAAAGTATAACTGATACAGAACTTCTGCGCAAGTACTCCACC
TTGCATTCTCTTCCATTGGACAAGAGTGAGAAGATTGTCAGGGACTTTCTTATCTCTGCT
ACTGCAAAAGATTGTAGCCTAATGATCAGCTTTCGACCAAGACAGAGTGGAACAACAGAT
TCTGAGTACGATTCTGTATTTCTTGATTCAGTGAACCAAAGCTATGATTACAAGGCATAT
TTTATTGATCTGGATGTGAAACCCTTGGATAAGATGGTACATTACTTTAAATTGGATCAA
AAGATAGTCAATTTCTACACTAGAAATGGAGAAGTTGGGGGAGATCCACGTGATCCTCCA
AAGGGATGTGGCCCTAGGTGACACAAAGGTTCAGCTCCAAAGGTTCAGCTCCAACATTGA
CGACCTTGAAATATAAAGGGCATAGGACAAGTGTCTGTTGTATCTTGGTGATTGTTGTGT
TTCTACAAGTGTGCATGTCCAATGTGCAGGTTCTCCTCCCTTCTAGGGAAAACGTGTAAG
AGAGTGGTAGTTGTTGTAGTACATCCTGTATACCGTGTGGTTTGCCTCAGCAGTAGGCCG
AATTTTCAGTAGACAAACATTAAGAAGAGTTAATAAACTGTATACTGAGGCATCCACGTT
TACCTTGGAAATCTATGATAAATTCCCGTATACTCAGCTTGCTGTGAATCTGTGAT
clustalw multiple alignements is not computed in this case