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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1303 fasta sequence
[GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCCTCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCACACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCTCCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACGAGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACCTCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCGAGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCCACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATCGCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGGAAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTT-CTGAAGGTTGATGTT-GATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGAGCTGCT-TTGCCATTGGTAACCCT-T-AT-GGATATGAGCACA-CCCTAACTACTGGGGTGGTTAGTGGATT-GGGGAGGGAGATACCATCTCCCAATGGGAGGCCGA-TTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCA-CTA-AT-TGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATT-GTGTATGGAACATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAGTGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTAAAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTGGACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTGCTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA]
[+] EMBL AK067918 [GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCCTCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCACACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCTCCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACGAGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACCTCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCGAGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCCACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATCGCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGGAAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTT CTGAAGGTTGATGTT GATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGAGCTGCT TTGCCATTGGTAACCCT T AT GGATATGAGCACA CCCTAACTACTGGGGTGGTTAGTGGATT GGGGAGGGAGATACCATCTCCCAATGGGAGGCCGA TTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCA CTA AT TGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATT GTGTATGGAACATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAGTGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTAAAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTGGACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTGCTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA]
[+] EMBL BI811142 [ tcccactcCGTATGATCTGCCTGTTCCTGAA GTTGATTTTGGATGGTGATAA TTGA GCCTGCTCCGATTGGAACATCAAA GGCTTGCGA TTTGGCAGAGCTGCTGTCGCCATTGGTAACCCTGTGATGGGATATGAGCACACCCCTTACTACCGGGGTGATTAGTGGATTCGGGGAGGGAGATACCATCTCCCAATGGGAGCCCGATTTCGTGGGGCTATACAGACAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACCTAGATGTGACTCATATGGTCATGTAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAAACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGGTGTATGGAACATCTGTGAcc ]
consensusID : consensus_5042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence
[GTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF334710 [GTAGTACATTATCCGCTAGTAAATGCAAGGTCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5042#0 GCGCGCGTCCAACGAGCGCCACTCCAGCCATGGCGGTCCACCCGCTGCTCCGCCTTCTCC 60
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 TCCTCCGGCCACCGCCACCGCCGCCGCCGCCGCCTCCCAACTCACCACCCTTCGCCACCA 120
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 CACGCCGCGCTTCCTCCGCCTCCGCCGCCGCCGCAGCGGCGCTCCTCCTCCTCGCGGCCT 180
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 CCCCTCGGCCGCGCCCCGCCCGCGCCGACCCCGGCGGCGGAGGCGGCGAGGACATCGACG 240
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 AGGCCCGCGTTGTGCGCCTCTTCCAGGAGGCGTCGCCGTCGGTGGTGTTCATCAAGGACC 300
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 TCGTCGTCGGGCGGACGCCGGGACGGGGAGGCGGGCAAGCGGTGGAGGCGGAGGACGGCG 360
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 AGGAGGGGGGCGCCACGGTGGAGGGGACCGGCTCTGGGTTCGTCTGGGACACCGCGGGCC 420
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 ACATTGTGACAAATTACCATGTGGTTGCAAAATTAGCTGGGGATGGATCTGCATTTCATC 480
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 GCTGCAAGTGTTTCCTTTAGGTGTTATTGGAGGATTCTAGTGGGAATAGTTATTTGAAGG 540
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 AAGGAAGGCTAGTAGGGTGTGATCCATCGTATGATCTTGCTGTTCTGAAGGTTGATGTTG 600
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 ATGGTGATAAGTTGAGGCCTGCTCTGATTGGAACATCAAAGGGCTTGCGAGTTGGGCAGA 660
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 GCTGCTTTGCCATTGGTAACCCTTATGGATATGAGCACACCCTAACTACTGGGGTGGTTA 720
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 GTGGATTGGGGAGGGAGATACCATCTCCCAATGGGAGGCCGATTCGTGGGGCTATACAGA 780
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 CAGATGCTGCTATAAATTCTGGTAACTCAGGTGGCCCACTAATTGACTCATATGGTCATG 840
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 TAATTGGAGTAAATACAGCTACATTCACACGTAAAGGAACTGGGATCTCCTCCGGGGTAA 900
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 ACTTCGCCATTCCCATCGACACTGTTGTACAGTCAGTCCCTAACCTCATTGTGTATGGAA 960
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 CATCTGTGAGCAATAGGTTTTGATTCTTCTGTAGTACATTATCCGCTAGTAAATGCAAGG 1020
consensus_5042#1 ------------------------------GTAGTACATTATCCGCTAGTAAATGCAAGG 30
******************************
consensus_5042#0 TCTCCCTCTGCCATGTTGATTGCTCTGAAATATATATACTTCTGCTGCTACTCGGATCAG 1080
consensus_5042#1 TCTCCCTCTGCCATGTTGATTGCTCTGAAATAAAAAAA-----------------AAAAA 73
******************************** * * * * *
consensus_5042#0 TGCATTCAAAAGAACATCTGCTTAATGGTGATCGTACTAGAAACTTTAGAGAACAAATTA 1140
consensus_5042#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 133
* **** ** * ** * * * *** * * ** *** *
consensus_5042#0 AAACGAAGCCGGAGCCGGAGTTCAGTATAAACCAGTAAGGAAGAAACTAACATATTTTTG 1200
consensus_5042#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 179
*** ** * * * * *** * ** ** ***
consensus_5042#0 GACATGCTCTGGTAATTCCTCTGTTGCTGAACTGATCCAATATCCATGAAGCATTTGCTG 1260
consensus_5042#1 ------------------------------------------------------------
consensus_5042#0 CTGAATGCTGGCTTCAAGGAAAGGAATTATCAGATGAGCCTGA 1303
consensus_5042#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||