cluster # 509

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Oryza sativa
cluster # 509 cluster # 509 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_509#0 length = 845 sequences # 1

consensus_509#1 length = 548 sequences # 1

consensusID : consensus_509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 845
fasta sequence

                              [GCGGGACGCATGCGCAGGAGGCGGTCGGCGACCGGCAAGAAAGGAGTAGCATCCTCCGCAAGGAGAAGGACGCACACCTCACCATCGCGGCCCCTGCCACGTTTTCCATTGTCCTCCGCGCCGCCCGACCTCGACGGCGTCCTCGCCATGAGTGGTGGCGGGCGAGCTCCCGCTTCTCCCCACCTGCTTCCCCGCCGCCCCTGTCGAAGACGACGACGCCGATGGTGATGGGTTTGAGGAGGGCACCGGGCCACCGATGCGTCGATCGGGCGTCGGCAGCTCGGGAGCAGGGTGGTGGCGGCTCGCAGGGCCGCATGGTGCAAGCGACGGCGGTGTCAAGGAGGGTGTCAGCGGCGCGTGGGGCCCAGGGCGCAAGCGGTAGTTACTGGCGGCGGCGGCGCGGGAGCGGGGTGTCGGGATGCAAGCAGCGCTGTGGAGGAGAGCGTCGTCGGCGTCGAGCGCCCTTGATCTGGTCGGCCGCCAGCTTCCGGAAGTGAACGGTCGCACGGGGTTCCACCGTCCTAATGGGGAATGGATCACATGCTTCTGTTTATGGTGTTGGCACGGTAGATCTGAAGTTTACTTCGGGATAGATCGTGCAGCTGAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTGTTAGTGGCTCCCGTCTGACTAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTCTAAATATGGATATTTTATTGGTAAAGGTTATGAGTGCGGAGGTCTGTTCCGCTTTTCTCTTTCTGATTTCTGCAATAAGTCTATGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAATGTATGGCACTCA]

[+] EMBL AK120305             [GCGGGACGCATGCGCAGGAGGCGGTCGGCGACCGGCAAGAAAGGAGTAGCATCCTCCGCAAGGAGAAGGACGCACACCTCACCATCGCGGCCCCTGCCACGTTTTCCATTGTCCTCCGCGCCGCCCGACCTCGACGGCGTCCTCGCCATGAGTGGTGGCGGGCGAGCTCCCGCTTCTCCCCACCTGCTTCCCCGCCGCCCCTGTCGAAGACGACGACGCCGATGGTGATGGGTTTGAGGAGGGCACCGGGCCACCGATGCGTCGATCGGGCGTCGGCAGCTCGGGAGCAGGGTGGTGGCGGCTCGCAGGGCCGCATGGTGCAAGCGACGGCGGTGTCAAGGAGGGTGTCAGCGGCGCGTGGGGCCCAGGGCGCAAGCGGTAGTTACTGGCGGCGGCGGCGCGGGAGCGGGGTGTCGGGATGCAAGCAGCGCTGTGGAGGAGAGCGTCGTCGGCGTCGAGCGCCCTTGATCTGGTCGGCCGCCAGCTTCCGGAAGTGAACGGTCGCACGGGGTTCCACCGTCCTAATGGGGAATGGATCACATGCTTCTGTTTATGGTGTTGGCACGGTAGATCTGAAGTTTACTTCGGGATAGATCGTGCAGCTGAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTGTTAGTGGCTCCCGTCTGACTAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTCTAAATATGGATATTTTATTGGTAAAGGTTATGAGTGCGGAGGTCTGTTCCGCTTTTCTCTTTCTGATTTCTGCAATAAGTCTATGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAATGTATGGCACTCA]




>consensus_509#0
GCGGGACGCATGCGCAGGAGGCGGTCGGCGACCGGCAAGAAAGGAGTAGCATCCTCCGCA
AGGAGAAGGACGCACACCTCACCATCGCGGCCCCTGCCACGTTTTCCATTGTCCTCCGCG
CCGCCCGACCTCGACGGCGTCCTCGCCATGAGTGGTGGCGGGCGAGCTCCCGCTTCTCCC
CACCTGCTTCCCCGCCGCCCCTGTCGAAGACGACGACGCCGATGGTGATGGGTTTGAGGA
GGGCACCGGGCCACCGATGCGTCGATCGGGCGTCGGCAGCTCGGGAGCAGGGTGGTGGCG
GCTCGCAGGGCCGCATGGTGCAAGCGACGGCGGTGTCAAGGAGGGTGTCAGCGGCGCGTG
GGGCCCAGGGCGCAAGCGGTAGTTACTGGCGGCGGCGGCGCGGGAGCGGGGTGTCGGGAT
GCAAGCAGCGCTGTGGAGGAGAGCGTCGTCGGCGTCGAGCGCCCTTGATCTGGTCGGCCG
CCAGCTTCCGGAAGTGAACGGTCGCACGGGGTTCCACCGTCCTAATGGGGAATGGATCAC
ATGCTTCTGTTTATGGTGTTGGCACGGTAGATCTGAAGTTTACTTCGGGATAGATCGTGC
AGCTGAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTGTTAGTGGCTCCCGTC
TGACTAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTCTAAATATG
GATATTTTATTGGTAAAGGTTATGAGTGCGGAGGTCTGTTCCGCTTTTCTCTTTCTGATT
TCTGCAATAAGTCTATGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAATGTATGGC
ACTCA

consensusID : consensus_509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [ACTCACAGACCACCAACTTCAAGAAGCAGAAGAAGAACAACAACAATTCTAACCAGGATGAGAGGACTTGCTTTGTGTGTGGGCAACCTGGTCATCTGGCTAGGAAGTGTCCACAGCGCAAGGGGATGAAGGCACCTGCAGGGCAGACTTCTAAGTCTGCTAATGTGACCATTGGTAACACTGGAGATGGAAGCGGGTCACACGGGGTTCCACCGTCCTAATGGGGAATGGGTCACATGCTTCTGTTCATGGTATTGGCACGGTAGGTCTGAAGTTTACTTCGGGAAAGATCGTGCAGCTGAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTAGTAGTGGCTCCCGTCTGACTAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTCTAAACATGGATATTTTATTGGTAAAGGTTATGAGTGCGGAGGCCTGTTCCGCTTTTCTCTTTCTGATTTCTGCAATAAGTCTGTGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAATGTATGGCGCTCACGTTTAT]

[+] EMBL CA764944             [ACTCACAGACCACCAACTTCAAGAAGCAGAAGAAGAACAACAACAATTCTAACCAGGATGAGAGGACTTGCTTTGTGTGTGGGCAACCTGGTCATCTGGCTAGGAAGTGTCCACAGCGCAAGGGGATGAAGGCACCTGCAGGGCAGACTTCTAAGTCTGCTAATGTGACCATTGGTAACACTGGAGATGGAAGCGGGTCACACGGGGTTCCACCGTCCTAATGGGGAATGGGTCACATGCTTCTGTTCATGGTATTGGCACGGTAGGTCTGAAGTTTACTTCGGGAAAGATCGTGCAGCTGAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTAGTAGTGGCTCCCGTCTGACTAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTCTAAACATGGATATTTTATTGGTAAAGGTTATGAGTGCGGAGGCCTGTTCCGCTTTTCTCTTTCTGATTTCTGCAATAAGTCTGTGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAATGTATGGCGCTCACGTTTAT]




>consensus_509#1
ACTCACAGACCACCAACTTCAAGAAGCAGAAGAAGAACAACAACAATTCTAACCAGGATG
AGAGGACTTGCTTTGTGTGTGGGCAACCTGGTCATCTGGCTAGGAAGTGTCCACAGCGCA
AGGGGATGAAGGCACCTGCAGGGCAGACTTCTAAGTCTGCTAATGTGACCATTGGTAACA
CTGGAGATGGAAGCGGGTCACACGGGGTTCCACCGTCCTAATGGGGAATGGGTCACATGC
TTCTGTTCATGGTATTGGCACGGTAGGTCTGAAGTTTACTTCGGGAAAGATCGTGCAGCT
GAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTAGTAGTGGCTCCCGTCTGAC
TAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTCTAAACATGGATA
TTTTATTGGTAAAGGTTATGAGTGCGGAGGCCTGTTCCGCTTTTCTCTTTCTGATTTCTG
CAATAAGTCTGTGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAATGTATGGCGCTC
ACGTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_509#0      GCGGGACGCATGCGCAGGAGGCGGTCGGCGACCGGCAAGAAAGGAGTAGCATCCTCCGCA 60
consensus_509#1      ------------------------------------------------------------
                                                                                 

consensus_509#0      AGGAGAAGGACGCACACCTCACCATCGCGGCCCCTGCCACGTTTTCCATTGTCCTCCGCG 120
consensus_509#1      ------------------------------------------------------------
                                                                                 

consensus_509#0      CCGCCCGACCTCGACGGCGTCCTCGCCATGAGTGGTGGCGGGCGAGCTCCCGCTTCTCCC 180
consensus_509#1      ------------------------------------------------------------
                                                                                 

consensus_509#0      CACCTGCTTCCCCGCCGCCCCTGTCGAAGACGACGACGCCGATGGTGATGGGTTTGAGGA 240
consensus_509#1      ------------------------------------------------------------
                                                                                 

consensus_509#0      GGGCACCGGGCCACCGATGCGTCGATCGGGCGTCGGCAGCTCGGGAGCAGGGTGGTGGCG 300
consensus_509#1      ------------------------------------------------------------
                                                                                 

consensus_509#0      GCTCGCAGGGCCGCATGGTGCAAGCGACGGCGGTGTCAAGGAGGGTGTCAGCGGCGCGTG 360
consensus_509#1      ACTCACAGA-CCACCAACTTCAAGAAGCAG-------AAGAAGAACAACAACAATTCT-- 50
                      *** ***  ** *    * ****   * *       *** **     ** *    *   

consensus_509#0      GGGCCCAGGGCGCAAGCGGTAGTTACTGGCGGCGGCGGCGCGGGAGCGGGGTGTCGGGAT 420
consensus_509#1      --AACCAGGATGAGAGGACTTGCTTTGTGTGTGGGCAACCTGGTCATCTGGCTAGGAAGT 108
                         *****  *  **   * * *    * *  ***  *  **      **    *   *

consensus_509#0      GCAAGCAGCGCT-GTGGAGGAGAGCGTC------GTCGGCGTCGAGCGCCCTTGATCTGG 473
consensus_509#1      GTCCACAGCGCAAGGGGATGAAGGCACCTGCAGGGCAGACTTCTAAGTCTGCTAATGTGA 168
                     *    ******  * *** **  **  *      *  * * ** *   *   * ** ** 

consensus_509#0      TCGGCCGCCAGCTTCCGGAAGTGAACGG-TCGCACGGGGTTCCACCGTCCTAATGGGGAA 532
consensus_509#1      CCATTGGTAACACTGGAGATGGAAGCGGGTCACACGGGGTTCCACCGTCCTAATGGGGAA 228
                      *    *  *   *   ** *  * *** ** ****************************

consensus_509#0      TGGATCACATGCTTCTGTTTATGGTGTTGGCACGGTAGATCTGAAGTTTACTTCGGGATA 592
consensus_509#1      TGGGTCACATGCTTCTGTTCATGGTATTGGCACGGTAGGTCTGAAGTTTACTTCGGGAAA 288
                     *** *************** ***** ************ ******************* *

consensus_509#0      GATCGTGCAGCTGAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTGTTAGTGG 652
consensus_509#1      GATCGTGCAGCTGAAGAACGTGCAGCATGTCCCTTCTATCGACAGGAATCTTAGTAGTGG 348
                     ****************************************************  ******

consensus_509#0      CTCCCGTCTGACTAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTC 712
consensus_509#1      CTCCCGTCTGACTAGAGACGGATTTAAGTTGGTTTTTGAGTCTAATAAAGTAGTCGTGTC 408
                     ************************************************************

consensus_509#0      TAAATATGGATATTTTATTGGTAAAGGTTATGAGTGCGGAGGTCTGTTCCGCTTTTCTCT 772
consensus_509#1      TAAACATGGATATTTTATTGGTAAAGGTTATGAGTGCGGAGGCCTGTTCCGCTTTTCTCT 468
                     **** ************************************* *****************

consensus_509#0      TTCTGATTTCTGCAATAAGTCTATGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAA 832
consensus_509#1      TTCTGATTTCTGCAATAAGTCTGTGAACCATATTTGTGGCAGTGTGGATGATGAGGCTAA 528
                     ********************** *************************************

consensus_509#0      TGTATGGCACTCA------- 845
consensus_509#1      TGTATGGCGCTCACGTTTAT 548
                     ******** ****