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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1401 fasta sequence
[TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCACAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCTGGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCCTCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAGGAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGCGATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGACTTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTCAAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATAGTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTGGAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGTGTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGGACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTCGGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGAGCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGAAGGTCAT-ATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTT-GTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATT-TTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAGAACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCAGCTGAATACCTTGTG-CAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATAGCCAAACCACTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA]
[+] EMBL AK106231 [TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCACAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCTGGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCCTCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAGGAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGCGATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGACTTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTCAAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATAGTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTGGAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGTGTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGGACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTCGGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGAGCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGAAGGTCAT ATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTT GTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATT TTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAGAACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCAGCTGAATACCTTGTG CAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATAGCCAAACCACTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA]
[+] EMBL BI805664 [ AGGTCATNANGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGTCAGACCATGTTTGGTGGACGAGCGCATGGGTAACATGTCACA GGTTGCAGCTCTGGGGTGCCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTATGATGTTTGTCGCAATTGTAATCGATTGTTTGTTGTTTTATTTATTTGGTTTGTTCAATGTACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCCAGTTCTATTAGGTTGGAAGACATACCACAGAG ACTGAATAAGGCCAGCTACTAGTTAGATTTCAGAGATGTTGACTTGCCATGGACATTGTTGGCACCTGAATACCTTGTGCCAGATTTGGTTCTTTGTGAACGTAGCTTCTTTTAGTAGTCTTCATATA CC AACC CTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATTAATAGATGAAATGCTaaaaa ]
consensusID : consensus_5114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence
[CCAACTCAGGTGGGATCTGTACCCACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTAGATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGCAGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCCCTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG]
[+] EMBL BI809553 [CCAACTCAGGTGGGATCTGTACCCACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTAGATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGCAGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCCCTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5114#0 TTTCGACCGGCTTCTCCTCGGTGTACTCCCGATGGAGAGAAATCAGTATCTGCCTCTTCA 60
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 CAGAGAACAGGCAATGCTCTGTTTGACTTGAATGTTTCTGAAAGTGACAATGCTACTGCT 120
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GGTGAACCACTTTCAGCAGCCATCCTTCCGCTTTCTTCTGACATAGTGCGAAAGGATGCC 180
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 TCTGCAACTGTTGGCCTGAATAGCCTTGAACTTGACCTTAATTGTCCATGTGACGATGAG 240
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GAAGCTGCAATCACCACAAGTAATGTACCATCATTTTGGAATCGACAACAATGTAATGGC 300
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GATTGGAGTCACCCTTCTTCCTCTTCATCTTCAAGGCAACCTGCAGTAAGGAACTTTGAC 360
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 TTGAATGACAACACACCAATCGTGGATGGCTTTTTACGAGGTGCAGATGAGTCCTCTGTC 420
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 AAGACTTCTGGGAGGGATGTGTCAGACCATTCTGCAGTGACAATTCTGGGCAAGAGAATA 480
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GTTCTTGGACAGAAGGAACATAGCCATCAAAATGAGCATAACTTTCTTGGGCCAAGTGTG 540
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GAATCAAGAGATCCTGCAAGGTCTATGCAATCTTACGGGCATACACCCCCTGATTATAGT 600
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GTTGTCAGCTATTCGTCTCATTCTGCTTTGTCTTTCCCGTCACCTTTCTATGCACCAGGG 660
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 ACTGTTCCTTATATGGTTGATGCAAAGGGCACGCCAGTTATACCTCCATTGCCAGGTTTC 720
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GGTGTACCAACGGTGCCAAACTTAGGAGTGGGCACATCTCATCCATCTCTCGGCAGCAGA 780
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 GCAATCCCACCCTCTAGTGAATTGAGCTTTTTTCATCCCAGCATGGATCTCAACTATGGA 840
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 AGGTCATATGAAGGTGCACGTAGGGAAGGTGCAAGCTATTGGCCTGTGTCTTTCCAAGGT 900
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 CAGACCATGTTTGTGGACGAGCGCATGGGTAACATGTCACAGGGTGGCAGCTCTGGGGTG 960
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 CCAGTATTGAAGCGAAAAGAGCCAGACTTAGGTTGGGATCTGTACCCACGTCGCTAGGTA 1020
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 TGATGTTTGTCGCAATTGTAATCGATTTTTGTTGTTTTATTTATTTGGTTTGTTCAATGT 1080
consensus_5114#1 ------------------------------------------------------------
consensus_5114#0 ACCGCTTGCTGTGGTACCTTGGACATTCTGGAGTATTTTTGGCACCTAAAAATAGGTCCC 1140
consensus_5114#1 ------------------------------------CCAACTCAGGTGGGATCTGTACCC 24
** * * * ***
consensus_5114#0 AGTTCTATTAGGTTGGAAGACATA-CCACAGAGAACTGAATAAGGCCAGCTACT-AGTTA 1198
consensus_5114#1 ACCTCGCTAGGTTGGGAAGACATAACCCCCGAGAACTGAATAAGGCCCGCTACTGAGTTA 84
* ** * * * ********** ** * ***************** ****** *****
consensus_5114#0 GATTTCAGAGATGTT--GACTTGCCATGGACA-TTGTTGGCAGCTGAAT--ACCTTGTGC 1253
consensus_5114#1 GATTTCAGAGATAGTTGGACTTGCCCTGGACACTTGTTGGCAGCTGGAATAACCTTGTGC 144
************ * ******** ****** ************* * *********
consensus_5114#0 AGATTTGGTTC---TTTGTGAACGTAGCTTCTTTTAGTAGTC-TTCATATAGCCAAACCA 1309
consensus_5114#1 AGATTTGGTTTCTGTTGGTGAACGTAGCTTCTTTTAGTAGTCGTTCATATAGCCCAACCC 204
********** ** ************************* *********** ****
consensus_5114#0 CTGTACGGAAAGCTGAATTTATGTATATCATTGTAGAACTTATAATT-AATAGATGAAAT 1368
consensus_5114#1 CTGTACGGAAAGCTGAATTTATGTATATCCTTGTAGAACTTATAATTGAATAGATG---- 260
***************************** ***************** ********
consensus_5114#0 GCTTCCAGTTTGTCCAAAAAAAAAAAAAAAAAA 1401
consensus_5114#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||