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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1302 fasta sequence
[CTTCATGTGTTATTACAAAACGTACCCTTGACACTTTTACCATTTTTTTAACCATCCTTTTTTTCCCATTTACTGTATAGTCAAAGTTTCACAACCCAAACAAGCAAAAGTGAAGAGAATTACATGAAGGAGACGGCACTGAACTACAACGCGGATGAACAAATAAAATTTAATATTAGGGCATTCCTTTCATGTAGTCTTGTTAAGATTCTTTTCCCTTCTCTAGAGTGTTCTGGTGTTGTAGGCAACCACAGCTTAGTGGCTTCCTTTATCATGCCAAATAAGAAAGAGATAGGCCTCTGCTTTTGTTAGTGTTTCCCCGTGCAAAGGAGGAGTTTTATTTTGTCACAAAATTGAAAGGTAGCAACCATTGTGACATATAATACACCTTTTTTGCATGGAGGAGGAGAAGAAAGCATCTATTCCAGCCCTGCCTTTTTGACAATGCTTAGTTGTCCAAGAGGGGTTTGTTTATATCTCGCTTTACTGCATGATTAAACGGAAAACGCTGGTCATTGTCCATATTAGCAAAAGCTTAATTAGTTAACAGATTCATCTAGAATCAACATCTTGAGCCGCCCCGGGGTGGGGGGGGGACAGGTATTTTGATATGTTTTTGTCACACAGGGAAAAGGAAAATTCAGCCATCCTTGAGATATCATGCACTTGCTTAGCACTGAGAAATTAATTAGATTGTATGCCTTTATTGGAGAACTAACTTCTACATTGTCTCATGGCTTATGTGCATGCTGAGGTAATGAACCGCTATACAAAGATGTAAACGTAAGTGGCAAAAATGAAGCCGGAGAGAGATGCACATCTTGGTGATAAGAGATTGCGACATCGTAGCCATCCTGATTTCTGCAGTTCTCATTCAAGAAAAGGAAAAGGAGACTTTGACCCATCGACTTTTTAACACCGTCGATTTCAGGAACAAAAAAAAGAAAAAGCCATCACGGTCAGGAGTGGTTCACGTCGTCGTCTGGTGAGTTCTTGTTGAGTTCTGGGAGGAGTGAAGAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAAAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTGCGTGGCGTCTGCCGTTTGGTGGTAACGTAGAGCCGCTTTAACTCCTGCAGCTAAAATATTTATTAGATGTTCTTTTGCACTGTCAAATTTGTTTTTTTTAAAAGAAATCCTCGAGCTGCAAATTCGAATTTGTTAGGCACATGTCTCATTCTCATTGTTGACGAGTTAATCATTCTTTTT]
[+] EMBL AK060386 [CTTCATGTGTTATTACAAAACGTACCCTTGACACTTTTACCATTTTTTTAACCATCCTTTTTTTCCCATTTACTGTATAGTCAAAGTTTCACAACCCAAACAAGCAAAAGTGAAGAGAATTACATGAAGGAGACGGCACTGAACTACAACGCGGATGAACAAATAAAATTTAATATTAGGGCATTCCTTTCATGTAGTCTTGTTAAGATTCTTTTCCCTTCTCTAGAGTGTTCTGGTGTTGTAGGCAACCACAGCTTAGTGGCTTCCTTTATCATGCCAAATAAGAAAGAGATAGGCCTCTGCTTTTGTTAGTGTTTCCCCGTGCAAAGGAGGAGTTTTATTTTGTCACAAAATTGAAAGGTAGCAACCATTGTGACATATAATACACCTTTTTTGCATGGAGGAGGAGAAGAAAGCATCTATTCCAGCCCTGCCTTTTTGACAATGCTTAGTTGTCCAAGAGGGGTTTGTTTATATCTCGCTTTACTGCATGATTAAACGGAAAACGCTGGTCATTGTCCATATTAGCAAAAGCTTAATTAGTTAACAGATTCATCTAGAATCAACATCTTGAGCCGCCCCGGGGTGGGGGGGGGACAGGTATTTTGATATGTTTTTGTCACACAGGGAAAAGGAAAATTCAGCCATCCTTGAGATATCATGCACTTGCTTAGCACTGAGAAATTAATTAGATTGTATGCCTTTATTGGAGAACTAACTTCTACATTGTCTCATGGCTTATGTGCATGCTGAGGTAATGAACCGCTATACAAAGATGTAAACGTAAGTGGCAAAAATGAAGCCGGAGAGAGATGCACATCTTGGTGATAAGAGATTGCGACATCGTAGCCATCCTGATTTCTGCAGTTCTCATTCAAGAAAAGGAAAAGGAGACTTTGACCCATCGACTTTTTAACACCGTCGATTTCAGGAACAAAAAAAAGAAAAAGCCATCACGGTCAGGAGTGGTTCACGTCGTCGTCTGGTGAGTTCTTGTTGAGTTCTGGGAGGAGTGAAGAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAAAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTGCGTGGCGTCTGCCGTTTGGTGGTAACGTAGAGCCGCTTTAACTCCTGCAGCTAAAATATTTATTAGATGTTCTTTTGCACTGTCAAATTTGTTTTTTTTAAAAGAAATCCTCGAGCTGCAAATTCGAATTTGTTAGGCACATGTCTCATTCTCATTGTTGACGAGTTAATCATTCTTTTT]
consensusID : consensus_5148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[TTTTTTTTTTTTTCAGGAGGGGTTCACGTCGTCGTCTGGGGAGTTCTTGTTGAGTTCTGGGAGTGAAAAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAGAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTCAACTTTATACACGGTTTCGATGTTGTTGGACGGACGGACTGAGAGATGATGGGCTGGCCCAAGCCTATTACACTACGGCCCAAGAGTACGTTTCCCCGTCCCCTTTTCTCTACCTGCATTCGGCCTGCCAAAGTTTGCTGCTTACAGCTTTACGTTGGAGCTGTTTTTCTCTCTTTTCATCTCACCCGTAGTTTTCTCTCTTCGTCGTAAAACTAGTACTATATTATACTGCATGCACTGTACATGTACATCCGTAGATTACGCATGATTACGGGGACAAATGTCCTATACCGTATCTTTAGTTTGGACTTCTAGATACTATTGCTACGTACGTACTGTACTAAAAAAAGTCTAAAATACGTATTGCACAATACGTACGTAGTAAAATACGTATCGGAACAATACCGTACCTACTCTTGTCTAGTAGGTCGACCGATCCACCTATGTTCAGGGGCGCCTCACACCCCCCAAATCCCTTCTCATTCTCAGCCATCTATATATTAGCTCTCATTCACCAG]
[+] EMBL CA760080 [TTTTTTTTTTTTTCAGGAGGGGTTCACGTCGTCGTCTGGGGAGTTCTTGTTGAGTTCTGGGAGTGAAAAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAGAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTCAACTTTATACACGGTTTCGATGTTGTTGGACGGACGGACTGAGAGATGATGGGCTGGCCCAAGCCTATTACACTACGGCCCAAGAGTACGTTTCCCCGTCCCCTTTTCTCTACCTGCATTCGGCCTGCCAAAGTTTGCTGCTTACAGCTTTACGTTGGAGCTGTTTTTCTCTCTTTTCATCTCACCCGTAGTTTTCTCTCTTCGTCGTAAAACTAGTACTATATTATACTGCATGCACTGTACATGTACATCCGTAGATTACGCATGATTACGGGGACAAATGTCCTATACCGTATCTTTAGTTTGGACTTCTAGATACTATTGCTACGTACGTACTGTACTAAAAAAAGTCTAAAATACGTATTGCACAATACGTACGTAGTAAAATACGTATCGGAACAATACCGTACCTACTCTTGTCTAGTAGGTCGACCGATCCACCTATGTTCAGGGGCGCCTCACACCCCCCAAATCCCTTCTCATTCTCAGCCATCTATATATTAGCTCTCATTCACCAG]
consensusID : consensus_5148#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[TTTTTTTTTTTTTTTTTATTTTTTTTTTTTTAGATCTAACGATTCAAAATTATGTAAAACTTACATATAAGTTACACTGTAGTTACATGCAAGTTACAATGGAATTATATATAAGTTACAATGGAATTACACTATGATTATACTATAATTATATTTGGCAAATTTTTAGGAGAAAATTTATCGACAAATGAATAGGTAGTCCCACTTATAATTATTTATACGGATCCATATCTACTCCGAAAACGGAGTAGGTGGTGGGCATTCCTTTGCATCTCTTGGAGCTAATAAGCTACATATATGCTTATATGCCACCCTAGCTCTAGCCCAATAGTATTCAATCCAGTAAGCATATATACAGGGCCGACCCTGCTCGATCGATCGAATGCGATGCTCTGCTGACCATGCAAAAAGATCATCATGCTAGCTAACTGCAGATACCAAAGACCTTGTGTCTGCACCATCCGTTTCCGATCGACCAGATCCGCCCATCACACAGCATTCTTGGGCCGTAGTGTAATAGGCTTGGGCCAGCCCATCATCTCTCAGTCAGTCCGTCCAACAACATCGAAGCCGTGTATAAAGTTGACCTATCTCTCTGCATGCATCCCTTCTATTTCTGAATATTTTCTGTCGCTGCTGTGCTACCGCATACGTGCTCGTCACTGACGCCGGNCGAGG]
[+] EMBL CA760173 [TTTTTTTTTTTTTTTTTATTTTTTTTTTTTTAGATCTAACGATTCAAAATTATGTAAAACTTACATATAAGTTACACTGTAGTTACATGCAAGTTACAATGGAATTATATATAAGTTACAATGGAATTACACTATGATTATACTATAATTATATTTGGCAAATTTTTAGGAGAAAATTTATCGACAAATGAATAGGTAGTCCCACTTATAATTATTTATACGGATCCATATCTACTCCGAAAACGGAGTAGGTGGTGGGCATTCCTTTGCATCTCTTGGAGCTAATAAGCTACATATATGCTTATATGCCACCCTAGCTCTAGCCCAATAGTATTCAATCCAGTAAGCATATATACAGGGCCGACCCTGCTCGATCGATCGAATGCGATGCTCTGCTGACCATGCAAAAAGATCATCATGCTAGCTAACTGCAGATACCAAAGACCTTGTGTCTGCACCATCCGTTTCCGATCGACCAGATCCGCCCATCACACAGCATTCTTGGGCCGTAGTGTAATAGGCTTGGGCCAGCCCATCATCTCTCAGTCAGTCCGTCCAACAACATCGAAGCCGTGTATAAAGTTGACCTATCTCTCTGCATGCATCCCTTCTATTTCTGAATATTTTCTGTCGCTGCTGTGCTACCGCATACGTGCTCGTCACTGACGCCGGNCGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5148#0 CTTCATGTGTTATTACAAAACGTACCCTTGACACTTTTACCATTTTTTTAACCATCCTTT 60
consensus_5148#1 ------------------------------------------------------------
consensus_5148#2 ------------------------------------------------------------
consensus_5148#0 TTTTCCCATTTACTGTATAGTCAAAGTTTCACAACCCAAACAAGCAAAAGTGAAGAGAAT 120
consensus_5148#1 ------------------------------------------------------------
consensus_5148#2 ------------------------------------------------------------
consensus_5148#0 TACATGAAGGAGACGGCACTGAACTACAACGCGGATGAACAAATAAAATTTAATATTAGG 180
consensus_5148#1 ------------------------------------------------------------
consensus_5148#2 ------------------------------------------------------------
consensus_5148#0 GCATTCCTTTCATGTAGTCTTGTTAAGATTCTTTTCCCTTCTCTAGAGTGTTCTGGTGTT 240
consensus_5148#1 -----------------------------TTTTTTTTTTTTTCAGGAGGGGTTCA-CGTC 30
consensus_5148#2 -----------------------------TTTTTTTTTTTTTTTTTATTTTTTTTTTTTT 31
* **** ** * * * *
consensus_5148#0 GTAGGCAACCACAGCTTAGTGGCTTCCTTTATCATGCCAAATAAGAAAGAGATAGGCCTC 300
consensus_5148#1 GTC----------GTCTGGGGAGTTCTTGTTGAGTTCTGGGAGTGAAAAATATGG----C 76
consensus_5148#2 AGA-----------TCTAACGATTCAAAATTATGTAAAACTTACATATAAGTTACA---C 77
* * * * * * * * *
consensus_5148#0 TGCTTTTGTTAGTGTTTCCCCGTGCAAAGGAGGAGTTTTATTTTGTCACAAAATTGAAAG 360
consensus_5148#1 GGCCTCGGCCGGCGT----CAGTG---ACGAGCACGTATGCGGTAGCACAGCAGCGACAG 129
consensus_5148#2 TGTAGTTACATGCAAGTTACAATG----GAATTATATATAAGTTACAATGGAATTACACT 133
* * * ** * * * * * * *
consensus_5148#0 GTAGCAACCATTGTGACATATAATACACCTTTTTTGCATGGAGGAGGAGAAGAAAGCATC 420
consensus_5148#1 AGAATATTCA----GAAATAGAAGGGA-------TGCATGCAGAGAGATAGGTCAACTTT 178
consensus_5148#2 ATGATTATACTATAATTATATTTGGCA--------AATTTTTAGGAGAAAATTTATCGAC 185
*** * * ** * * *
consensus_5148#0 -TATTCCAGCCCTGCCTTTTTGACAATGCTTAGTTGTCCAAGAGGGGTTTGTTTATATCT 479
consensus_5148#1 ATACACGGTTTCGATGTTGTTGGACGGACGGACTGAGAGATGATGGGCTGGCCCAAGCCT 238
consensus_5148#2 AAAT---GAATAGGTAGTCCCACTTATAATTATTTATACG---------GATCCATATCT 233
* * * * * **
consensus_5148#0 CGCTTTACTGCATGATTAAACGGAAAACGCTGGTCATTGTCCATATTAGCAAAAGCTTAA 539
consensus_5148#1 ---ATTACACTACGGCCCAA--GAGTACGTT--TCCCCGTCCCCTTTT-------CTCTA 284
consensus_5148#2 ACTCCGAAAACG-GAGTAGGTGGTGGGCATT--CCTTTGCATCTCTTGG-----AGCTAA 285
* * * * * * * ** *
consensus_5148#0 TTAGTTAACAGATTCATCTAGAATCAACATCTTGAGCCGCCCCGGGGTGGGGGGGGGACA 599
consensus_5148#1 CCTGCATTCGGCCTG--CCAAAGTTTGCTGCTT--ACAGCTTTACGTTGG---------A 331
consensus_5148#2 TAAGCTA-CATATATGCTTATA--TGCCACCCT----AGCTCTAGCCCAA---------- 328
* * * * * * * **
consensus_5148#0 GGTATTTTGATATGTTTTTGTCACACAGGGAAAAGGAAAATTCAGCCATC---CTTGAGA 656
consensus_5148#1 GCTGTTTTTCTCTCTTTTCATCTCACCCGTAGTTTTCTCTCTTCGTCGTAAAACTAGTAC 391
consensus_5148#2 --TAGTATTCAATCCAGTAAGCATATATACAGGGCCGACCCTGCTCGATCGATCGAATGC 386
* * * * * * * * * * *
consensus_5148#0 TATCATGCACT---TGCTTAGCACTGAGA-AATTAATTAGATTGTATGCCTTTATTGGAG 712
consensus_5148#1 TATATTATACTGCATGCACTGTACATGTA-CATCCGT-AGATTACGCATGATTAC-GGGG 448
consensus_5148#2 GATGCTCTGCTG---ACCATGCAAAAAGATCATCATGCTAGCTAACTGCAGATACCAAAG 443
** * ** * * * * ** * ** *
consensus_5148#0 AACTAACTTCTACATTGTCTCATGGCTTATGTGCATGCTGAGGTAATGAACCGCTATACA 772
consensus_5148#1 ACAAATGTCCTATACCGTATCTT---TAGTTTGGACTTCTAGATACT--ATTGCTACGTA 503
consensus_5148#2 ACCTTGTGTCTGCACCATCCGTT------TCCGATCGACCAGATCCG--CCCATCACACA 495
* ** * * * * * ** * * *
consensus_5148#0 AAGA-TGTAAACGTAAGTGGCAAAAATGAAGCCGGAGAGAGATGCACATCTTGGTGATAA 831
consensus_5148#1 CGTACTGTACTAAAAAAAGTCTAAAATACGTATTGCACAATACGTACGTAGTAA-AATAC 562
consensus_5148#2 GCATTCTTGGGCCGTAGTGT----AATA-GGCTTGGGCCAGCCCATCATCTCTCAGTCAG 550
* * * *** * * * * *
consensus_5148#0 GAGATTG--CGACATCGTAGCCATCCTGATTTCTGCAGTT--CTCATTCAAGAAAAGGAA 887
consensus_5148#1 GTATCGGAACAATACCGTACCTACTCTTGTCTAGTAGGTCGACCGATCCACCTATGTTCA 622
consensus_5148#2 TCCGTCCAACAACATCGAAGCC------GTGTATAAAGTTGACCTATCTCTCTGCATGCA 604
* * * ** * * * * ** * ** *
consensus_5148#0 AAGGAGACTTTGACCCATCGACTTTTTAACACCGTCGATTTCAGGAACAAAAAAAAGAAA 947
consensus_5148#1 GGGGCGCCTCACACCCCCCAAATCCCT-----TCTCATTCTCAGCCATCTATATATTAGC 677
consensus_5148#2 ----TCCCTTCTATTTCTGAATATTTT----CTGTCGCTGCTGTGCTACCGCATACGTGC 656
** * * * ** * * *
consensus_5148#0 AAGCCATCACGGTCAGGAGTGGTTCACGTCGTCGTCTGGTGAGTTCTTGTTGAGTTCTGG 1007
consensus_5148#1 TCTCATTCACCAG----------------------------------------------- 690
consensus_5148#2 TCGTCACTGACGCCGGNCGAGG-------------------------------------- 678
consensus_5148#0 GAGGAGTGAAGAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCA 1067
consensus_5148#1 ------------------------------------------------------------
consensus_5148#2 ------------------------------------------------------------
consensus_5148#0 CAGCAGCGACAGAAAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTGCGTGG 1127
consensus_5148#1 ------------------------------------------------------------
consensus_5148#2 ------------------------------------------------------------
consensus_5148#0 CGTCTGCCGTTTGGTGGTAACGTAGAGCCGCTTTAACTCCTGCAGCTAAAATATTTATTA 1187
consensus_5148#1 ------------------------------------------------------------
consensus_5148#2 ------------------------------------------------------------
consensus_5148#0 GATGTTCTTTTGCACTGTCAAATTTGTTTTTTTTAAAAGAAATCCTCGAGCTGCAAATTC 1247
consensus_5148#1 ------------------------------------------------------------
consensus_5148#2 ------------------------------------------------------------
consensus_5148#0 GAATTTGTTAGGCACATGTCTCATTCTCATTGTTGACGAGTTAATCATTCTTTTT 1302
consensus_5148#1 -------------------------------------------------------
consensus_5148#2 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||