cluster # 5176

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Oryza sativa
cluster # 5176 cluster # 5176 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5176#0 length = 1165 sequences # 2

consensus_5176#1 length = 296 sequences # 1

consensusID : consensus_5176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1165
fasta sequence

                              [ATCAAAATGTTTCCTTTGATTATTGCTAGATCATAAAGTTTAGGAAATCACAACATTAGTATGTCCCGACCTTGCACATTCCATGAAGCATCCCAACAACAAAAAAAACCCCACCAATTCAACCATCATCCAGCAAATCATTGTTTAAAAACATTCTGGCATTTTAAATGTATGTAAACTACAACGAGCAAAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTACACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCTGCTGGAGTTACCCGAGAGCAGCGGAACA-CCCCACACGCCTCCAGCTGCAAGCATCCTCTTGCAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCAATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCACTTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAGTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTAGCAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTACAATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAAAGCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTACAACAGTTGGCCAAACAAACAGACTTGAGAAGGAAGCAACATTGACCAAATCCAAGAAATGCATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTCGAAGATTTATGCATCGCTGTCCAATATGCTCCAATGCAGCAGTTTCCATAATATGGCACATGTTAATGTCCATGTGTTGTAGCATTCTACAGTTCTGGGAAACACG]

[+] EMBL CB632966             [ATCAAAATGTTTCCTTTGATTATTGCTAGATCATAAAGTTTAGGAAATCACAACATTAGTATGTCCCGACCTTGCACATTCCATGAAGCATCCCAACAACAAAAAAAACCCCACCAATTCAACCATCATCCAGCAAATCATTGTTTAAAAACATTCTGGCATTTTAAATGTATGTAAACTACAACGAGCAAAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTACACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCTGCTGGAGTTACCCGAGAGCAGCGGAACA CCCCACACGCCTCCAGCTGCAAGCATCCTCTTGCAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCAATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCACTTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAGTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTAGCAAGCCCGGTATCATT                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CA766812             [                                                                                                                                                                                                                                                                                                                                                                                    GATCATTGATCATCCTGCACTTCCCTGTGGCNTCCTCTGGCNCCTTACACTTTTCANCAATGATCCTNTGCAATCTGAAGCTGCCTCCAGCTAGGGCTGCCACGCCTGCTGNAGTTACNTGAGAGCAGCGGAACACCCCCACACGCCTCCAGCTGCAAGCATCCTCTTGCAATATCTGCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCAATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCACTTATATTCAGATGGACTACATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAGTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTAGCAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTACAATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAAAGCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTACAACAGTTGGCCAAACAAACAGACTTGAGAAGGAAGCAACATTGACCAAATCCAAGAAATGCATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTCGAAGATTTATGCATCGCTGTCCAATATGCTCCAATGCAGCAGTTTCCATAATATGGCACATGTTAATGTCCATGTGTTGTAGCATTCTACAGTTCTGGGAAACACG]




>consensus_5176#0
ATCAAAATGTTTCCTTTGATTATTGCTAGATCATAAAGTTTAGGAAATCACAACATTAGT
ATGTCCCGACCTTGCACATTCCATGAAGCATCCCAACAACAAAAAAAACCCCACCAATTC
AACCATCATCCAGCAAATCATTGTTTAAAAACATTCTGGCATTTTAAATGTATGTAAACT
ACAACGAGCAAAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCAT
CATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAGCTCAAACGA
GCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAG
AAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTAC
ACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCTG
CTGGAGTTACCCGAGAGCAGCGGAACACCCCACACGCCTCCAGCTGCAAGCATCCTCTTG
CAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCA
ATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCAC
TTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAG
TAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTAG
CAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTAC
AATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAAA
GCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTAC
AACAGTTGGCCAAACAAACAGACTTGAGAAGGAAGCAACATTGACCAAATCCAAGAAATG
CATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTCGAAGATTTATGCATCGCTGTC
CAATATGCTCCAATGCAGCAGTTTCCATAATATGGCACATGTTAATGTCCATGTGTTGTA
GCATTCTACAGTTCTGGGAAACACG

consensusID : consensus_5176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [CCCNCGGGGGCGGNCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAACATTCTGACATTTTAAATGTACGTAAACTACAACGAGCAGAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCT]

[-] EMBL CB097082             [CCCNCGGGGGCGGNCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAACATTCTGACATTTTAAATGTACGTAAACTACAACGAGCAGAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCT]




>consensus_5176#1
CCCNCGGGGGCGGNCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAAC
ATTCTGACATTTTAAATGTACGTAAACTACAACGAGCAGAGAGTTTCCTTAAAACATCCC
AACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATATTGTTTAAAATATTCTCAC
ATTTTAAATGTATGTAAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAA
GACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5176#0      ATCAAAATGTTTCCTTTGATTATTGCTAGATCATAAAGTTTAGGAAATCACAACATTAGT 60
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      ATGTCCCGACCTTGCACATTCCATGAAGCATCCCAACAACAAAAAAAACCCCACCAATTC 120
consensus_5176#1      --------------------------------CCCNCGGGGGCGGNCGCTTTTTTTTTTT 28
                                                      **  *           *        ** 

consensus_5176#0      AACCATCATCCAGCAAATCATTGTTTAAAAACATTCTGGCATTTTAAATGTATGTAAACT 180
consensus_5176#1      TTTTTTTTTTTTTTTTTTTTTTTGTTTAAAACATTCTGACATTTTAAATGTACGTAAACT 88
                           *  *        *  **  ** *********** ************* *******

consensus_5176#0      ACAACGAGCAAAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCAT 240
consensus_5176#1      ACAACGAGCAGAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCAT 148
                      ********** *************************************************

consensus_5176#0      CATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAA-GCTCAAACG 299
consensus_5176#1      CATCCAGGAAAT-ATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAAGCTCAAACG 207
                      ************ ************************************* *********

consensus_5176#0      AGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAA 359
consensus_5176#1      AGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAA 267
                      ************************************************************

consensus_5176#0      GAAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTA 419
consensus_5176#1      GAAATAAGGATGGGATCATTGATCATCCT------------------------------- 296
                      *****************************                               

consensus_5176#0      CACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCT 479
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      GCTGGAGTTACCCGAGAGCAGCGGAACACCCCACACGCCTCCAGCTGCAAGCATCCTCTT 539
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      GCAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTC 599
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      AATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCA 659
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      CTTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCA 719
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      GTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTA 779
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      GCAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTA 839
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      CAATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAA 899
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      AGCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTA 959
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      CAACAGTTGGCCAAACAAACAGACTTGAGAAGGAAGCAACATTGACCAAATCCAAGAAAT 1019
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      GCATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTCGAAGATTTATGCATCGCTGT 1079
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      CCAATATGCTCCAATGCAGCAGTTTCCATAATATGGCACATGTTAATGTCCATGTGTTGT 1139
consensus_5176#1      ------------------------------------------------------------
                                                                                  

consensus_5176#0      AGCATTCTACAGTTCTGGGAAACACG 1165
consensus_5176#1      --------------------------