cluster # 5195

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Oryza sativa
cluster # 5195 cluster # 5195 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5195#0 length = 766 sequences # 2

consensus_5195#1 length = 381 sequences # 1

consensusID : consensus_5195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 766
fasta sequence

                              [TTTTTTTTTTATCTTTCATTTTTCATCCATAAAATCTTGGCATTAAGATTCGGGTTATGGNATATCCAACTGGTAGTTATATTGGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACAGTAGACCGTGTCTATGTCGTCGTCGATGGATGCGTATGCTGATGCTGATCAGTCGGCGTAGGAGGCAAGGGCGGTCGCGGTGAGGGTAAGAACGACAGTGACAAGTGCAGCAGCGAGTACCAGCTTGGTGAGGAGCTTCACGGTGGTCGTCGGGATCGCCATCATGTCCCCAACGGCGCCGCCGCCGGCACCGACATGCGCGTAGATGAGCATCATGGAGAGGAAGAACGTCGCCGCCGCAGCAGTTGGAAGAAGCACATGTGCAACGGCGACGGCGAGAGGAGGCAGAAGTTCTTGAGCGCCATCGACGATGACGCCTGGCTCTAGCTGAGGAACCAAGAAGACATGTAGCACGCCGGAAGACGCAAACAGGACGAGGTAAACGCCCCGTGTAATCCTCCCGTTCACGCCGCCGCCGCCGGCGTTGTA]

[-] EMBL BQ907377             [TTTTTTTTTTATCTTTCATTTTTCATCCATAAAATCTTGGCATTAAGATTCGGGTTATGGNATATCCAACTGGTAGTTATATTGGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB677104             [                                                               ATCCAACTTGTAGTTATATT GCACTTCCATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACAGTAGACCGTGTCTATGTCGTCGTCGATGGATGCGTATGCTGATGCTGATCAGTCGGCGTAGGAGGCAAGGGCGGTCGCGGTGAGGGTAAGAACGACAGTGACAAGTGCAGCAGCGAGTACCAGCTTGGTGAGGAGCTTCACGGTGGTCGTCGGGATCGCCATCATGTCCCCAACGGCGCCGCCGCCGGCACCGACATGCGCGTAGATGAGCATCATGGAGAGGAAGAACGTCGCCGCCGCAGCAGTTGGAAGAAGCACATGTGCAACGGCGACGGCGAGAGGAGGCAGAAGTTCTTGAGCGCCATCGACGATGACGCCTGGCTCTAGCTGAGGAACCAAGAAGACATGTAGCACGCCGGAAGACGCAAACAGGACGAGGTAAACGCCCCGTGTAATCCTCCCGTTCACGCCGCCGCCGCCGGCGTTGTA]




>consensus_5195#0
TTTTTTTTTTATCTTTCATTTTTCATCCATAAAATCTTGGCATTAAGATTCGGGTTATGG
NATATCCAACTGGTAGTTATATTGGCACTTATATTCAATTACAGGGACCACACTTAGCTA
AATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCA
GTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTG
CTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGC
TTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACAGTAGACCGTGTCTATGTCGTCGT
CGATGGATGCGTATGCTGATGCTGATCAGTCGGCGTAGGAGGCAAGGGCGGTCGCGGTGA
GGGTAAGAACGACAGTGACAAGTGCAGCAGCGAGTACCAGCTTGGTGAGGAGCTTCACGG
TGGTCGTCGGGATCGCCATCATGTCCCCAACGGCGCCGCCGCCGGCACCGACATGCGCGT
AGATGAGCATCATGGAGAGGAAGAACGTCGCCGCCGCAGCAGTTGGAAGAAGCACATGTG
CAACGGCGACGGCGAGAGGAGGCAGAAGTTCTTGAGCGCCATCGACGATGACGCCTGGCT
CTAGCTGAGGAACCAAGAAGACATGTAGCACGCCGGAAGACGCAAACAGGACGAGGTAAA
CGCCCCGTGTAATCCTCCCGTTCACGCCGCCGCCGCCGGCGTTGTA

consensusID : consensus_5195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [TTTCACTTTTTCATCCATAAAATCTTGCATTAAGATTCGTGTTATTGTATATCCAACTTGTAGTTATATTGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACTGGCTGACATGGCTGCACACGTACGGCAGCAGCGCACGCACGCTCAGCTCAGTTCCGGC]

[-] EMBL AK063905             [TTTCACTTTTTCATCCATAAAATCTTGCATTAAGATTCGTGTTATTGTATATCCAACTTGTAGTTATATTGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACTGGCTGACATGGCTGCACACGTACGGCAGCAGCGCACGCACGCTCAGCTCAGTTCCGGC]




>consensus_5195#1
TTTCACTTTTTCATCCATAAAATCTTGCATTAAGATTCGTGTTATTGTATATCCAACTTG
TAGTTATATTGCACTTATATTCAATTACAGGGACCACACTTAGCTAAATAACTCTAAACG
GCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACCAGTAGAACTCCTACA
GCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCTGCTCTTGGAGGTCTT
AATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAGCTTGCTCTCCTCTTC
CGGCCGAAAAAGCTTCCTCCACTGGCTGACATGGCTGCACACGTACGGCAGCAGCGCACG
CACGCTCAGCTCAGTTCCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5195#0      TTTTTTTTTTATCTTTCA-TTTTTCATCCATAAAATCTTGGCATTAAGATTCGGGTTATG 59
consensus_5195#1      -------------TTTCACTTTTTCATCCATAAAATCTTG-CATTAAGATTCGTGTTATT 46
                                   ***** ********************* ************ ***** 

consensus_5195#0      GNATATCCAACTGGTAGTTATATTGGCACTTATATTCAATTACAGGGACCACACTTAGCT 119
consensus_5195#1      GTATATCCAACTTGTAGTTATATTG-CACTTATATTCAATTACAGGGACCACACTTAGCT 105
                      * ********** ************ **********************************

consensus_5195#0      AAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACC 179
consensus_5195#1      AAATAACTCTAAACGGCAAAAGGACCCCAATGACAACAGTCACAAGCTCTAAACACAACC 165
                      ************************************************************

consensus_5195#0      AGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCT 239
consensus_5195#1      AGTAGAACTCCTACAGCAACTATAAACAGGGAAAGCAAACATCACAACTATCCCACTCCT 225
                      ************************************************************

consensus_5195#0      GCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAG 299
consensus_5195#1      GCTCTTGGAGGTCTTAATCTTGTCATCATTTGCTTCATCTGTTCCACCTTTTGTTTTCAG 285
                      ************************************************************

consensus_5195#0      CTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACAGTAGACCGTGTCTATGTCGTCG 359
consensus_5195#1      CTTGCTCTCCTCTTCCGGCCGAAAAAGCTTCCTCCACTGGCTGACATGGCTGCA-CACGT 344
                      ************************************* *     * ** **    *    

consensus_5195#0      TCGATGGATGCGTATGCTGATGCTGATCAGTCGGCGTAGGAGGCAAGGGCGGTCGCGGTG 419
consensus_5195#1      ACGGCAGCAGCGCACGCACGCTCAGCTCAGTTCCGGC----------------------- 381
                       **   *  *** * **     * * *****    *                        

consensus_5195#0      AGGGTAAGAACGACAGTGACAAGTGCAGCAGCGAGTACCAGCTTGGTGAGGAGCTTCACG 479
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      GTGGTCGTCGGGATCGCCATCATGTCCCCAACGGCGCCGCCGCCGGCACCGACATGCGCG 539
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      TAGATGAGCATCATGGAGAGGAAGAACGTCGCCGCCGCAGCAGTTGGAAGAAGCACATGT 599
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      GCAACGGCGACGGCGAGAGGAGGCAGAAGTTCTTGAGCGCCATCGACGATGACGCCTGGC 659
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      TCTAGCTGAGGAACCAAGAAGACATGTAGCACGCCGGAAGACGCAAACAGGACGAGGTAA 719
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      ACGCCCCGTGTAATCCTCCCGTTCACGCCGCCGCCGCCGGCGTTGTA 766
consensus_5195#1      -----------------------------------------------