cluster # 5196

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Oryza sativa
cluster # 5196 cluster # 5196 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5196#0 length = 665 sequences # 2

consensus_5196#1 length = 640 sequences # 1

consensusID : consensus_5196#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [TTCGAAGCTTTTGCAGAAGCTTTTGAACTCGGCTCAGGTTAGCCGAGAGGAGTATGACTCCATGATTGATCTCCTCCTCCCTTTTGGAAGATCCACGCAGAGCCAGGCATCCCTGCCAAGTTAAACCTCAAGCAACACAAGTATCTAAATACATGTTTACACAGCGGAGTAAATAGAGAGAGGTTCTACATATCAGCGTCACTTGGCAGTCTATTCGGATATACTATCATAATGGTGCCTCTTGCGTCTGGTTGTTTAGGTTTCGGAACACGTCTTGCAAAATATCGGTTGCTCCCAGTTGCTTCAACTATCCCCTTTGCATTGGCGTCAGACGTACAAGCGGAGGNGGCACTGATTCCTGTCATTCTCAGGAATTGTTAGCTTTAGTGAGGAGAGCAAAAGATAACTGCCTCCAGAACAATTTGGTCCACTATGGACTTTTATCTCTCATTGCTAGCGCA-TTCAGAATTGTAGTGCATCTTTGGGTTTTTTTTTTTACCTCTTTTACCGGTGTGCAGTTTGTCAGGTTAGTACAGCCGAATTTGACCAGCTAACAACCCACTCGNGAGTCCTAATAGGTGAGTGCTAGATATCAAGNGGTATAGTAAACCCAGTGGTTAGCATCTATAAAATTCGGAATTTTTATGNCNGGNCAAAAAAAAAAA]

[+] EMBL AU090456             [TTCGAAGCTTTTGCAGAAGCTTTTGAACTCGGCTCAGGTTAGCCGAGAGGAGTATGACTCCATGATTGATCTCCTCCTCCCTTTTGGAAGATCCACGCAGAGCCAGGCATCCCTGCCAAGTTAAACCTCAAGCAACACAAGTATCTAAATACATGTTTACACAGCGGAGTAAATAGAGAGAGGTTCTACATATCAGCGTCACTTGGCAGTCTATTCGGATATACTATCATAATGGTGCCTCTTGCGTCTGGTTGTTTAGGTTTCGGAACACGTCTTGCAAAATATCGGTTGCTCCCAGTTGCTTCAACTATCCCCTTTGCATTGGCGTCAGACGTACAAGCGGAGGNGGCACTGATTCCTGTCATTCTCAGGAATTGTTAGCTTTAGTGAGGAGAGCAAAAGATAACTGCCTCCAGAACAATTTGGTCCACTATGGACTTTTATCTCTCATTGCTAGCGCA TTCAGAATTGTAGTGCATCTTTGGGTTTTTTTTTTTACCTCTTTTACCGGTGTGCAGTTTGTCAGGTTAGTACAGCCGAATTTGACCAGCTAACAACCCACTCGNGAGTCCTAATAGGTGAGTGCTAGATATCAAGNGGTATAGTAAACCCAGTGGTTAGCATCTATAAAATTCGGAATTTTTATGNCNGGNCAAAAAAAAAAA]
[+] EMBL AU173423             [                                                                                                                                                                                                                                        TGGTGCCTCTTGCGTCTGGTTGTTTAGGTTTCGGAACACGTCTTGCAAAATATCGGTTGCTCCCAGTTGCTTCAACTATCCCCTTTGCATTGGCGTCAGACGTACAAGCGGAGCGGGCNCTGATTCCTGTCATTNTCAGGAATTGTTAGCTTTAGTGAGGAGAGCAAAAGATAACTGCCTCCAGAACAATTTGGTCCNCTATGGACTTTTATCTCTCATTGCTAGCGCAGTTCAGAATTGTAGTGCATCTTTGGG TTTTTTTTTTACCTCTTTTACCGGTGTGCAGTTTGTCAGGTTAGTACAGCCGAATTTGACCAGCTAACAACCCACTCGTGAGTCCTAATAGGTGAGTGCTAGATATCAAGTGGTATAGTAAACCCAGT GTTAGCATCTATAAAATTNTGAA TTTTATG CCTGTCAAAAAAAAAAA]




>consensus_5196#0
TTCGAAGCTTTTGCAGAAGCTTTTGAACTCGGCTCAGGTTAGCCGAGAGGAGTATGACTC
CATGATTGATCTCCTCCTCCCTTTTGGAAGATCCACGCAGAGCCAGGCATCCCTGCCAAG
TTAAACCTCAAGCAACACAAGTATCTAAATACATGTTTACACAGCGGAGTAAATAGAGAG
AGGTTCTACATATCAGCGTCACTTGGCAGTCTATTCGGATATACTATCATAATGGTGCCT
CTTGCGTCTGGTTGTTTAGGTTTCGGAACACGTCTTGCAAAATATCGGTTGCTCCCAGTT
GCTTCAACTATCCCCTTTGCATTGGCGTCAGACGTACAAGCGGAGGNGGCACTGATTCCT
GTCATTCTCAGGAATTGTTAGCTTTAGTGAGGAGAGCAAAAGATAACTGCCTCCAGAACA
ATTTGGTCCACTATGGACTTTTATCTCTCATTGCTAGCGCATTCAGAATTGTAGTGCATC
TTTGGGTTTTTTTTTTTACCTCTTTTACCGGTGTGCAGTTTGTCAGGTTAGTACAGCCGA
ATTTGACCAGCTAACAACCCACTCGNGAGTCCTAATAGGTGAGTGCTAGATATCAAGNGG
TATAGTAAACCCAGTGGTTAGCATCTATAAAATTCGGAATTTTTATGNCNGGNCAAAAAA
AAAAA

consensusID : consensus_5196#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [TAGCCAGAGGCCGAGACAAGGGGGTTTATTGCAGGTGGAAGAGAATGTCCTCAGAAGAGAGTTCCAAATGATGGCCTCTCATCTGAAATTAGAAAAGCTTTGGATTCTTGTGTGTGTAATGCCCTGCCAGTTCTTGTATCAAACTTGAGGATGCAAATTCCAGTGTCAAAGTTGGAGAATACTCTGGGATGCCCGTTGGACACCATGTCATTTGTTTATGCACCGCCTTCTGTCAGATCAAGGCAGTGGCAAATGATGGTTCTCGAGCTGCTTGATGCGCTCTCACTCCATTGGCTTCCTGCTCCTGCTCCAATAATGTCAGATTTGAAGCTTTTGCAGAAGCTTTTCAACTCGGCTCAGGTTAACCGAGAGGAGTATGTCTCCATGATTGATCTCCTCCTCCCGTTGGGAAGATCCCCGCAAAGCCAGGCATCCCTGCCAAGTTAAACCTCAAGCACCCCAAGTATCTAAATGCAAGTTTGCACAGCGGAGTAAATAGAGACAGGTTCTACATATTAGCGTCAGCCTGGCCGTCCATTTGGATATACTATCATAATGGTGCCTCTTGAGTCAGGTTGATTAGGTTTCGGAACACGTCTTGCAAAATATCGGATGCTTTCCAGTTTCTTCAAAAAAAAAA]

[-] EMBL CA763339             [TAGCCAGAGGCCGAGACAAGGGGGTTTATTGCAGGTGGAAGAGAATGTCCTCAGAAGAGAGTTCCAAATGATGGCCTCTCATCTGAAATTAGAAAAGCTTTGGATTCTTGTGTGTGTAATGCCCTGCCAGTTCTTGTATCAAACTTGAGGATGCAAATTCCAGTGTCAAAGTTGGAGAATACTCTGGGATGCCCGTTGGACACCATGTCATTTGTTTATGCACCGCCTTCTGTCAGATCAAGGCAGTGGCAAATGATGGTTCTCGAGCTGCTTGATGCGCTCTCACTCCATTGGCTTCCTGCTCCTGCTCCAATAATGTCAGATTTGAAGCTTTTGCAGAAGCTTTTCAACTCGGCTCAGGTTAACCGAGAGGAGTATGTCTCCATGATTGATCTCCTCCTCCCGTTGGGAAGATCCCCGCAAAGCCAGGCATCCCTGCCAAGTTAAACCTCAAGCACCCCAAGTATCTAAATGCAAGTTTGCACAGCGGAGTAAATAGAGACAGGTTCTACATATTAGCGTCAGCCTGGCCGTCCATTTGGATATACTATCATAATGGTGCCTCTTGAGTCAGGTTGATTAGGTTTCGGAACACGTCTTGCAAAATATCGGATGCTTTCCAGTTTCTTCAAAAAAAAAA]




>consensus_5196#1
TAGCCAGAGGCCGAGACAAGGGGGTTTATTGCAGGTGGAAGAGAATGTCCTCAGAAGAGA
GTTCCAAATGATGGCCTCTCATCTGAAATTAGAAAAGCTTTGGATTCTTGTGTGTGTAAT
GCCCTGCCAGTTCTTGTATCAAACTTGAGGATGCAAATTCCAGTGTCAAAGTTGGAGAAT
ACTCTGGGATGCCCGTTGGACACCATGTCATTTGTTTATGCACCGCCTTCTGTCAGATCA
AGGCAGTGGCAAATGATGGTTCTCGAGCTGCTTGATGCGCTCTCACTCCATTGGCTTCCT
GCTCCTGCTCCAATAATGTCAGATTTGAAGCTTTTGCAGAAGCTTTTCAACTCGGCTCAG
GTTAACCGAGAGGAGTATGTCTCCATGATTGATCTCCTCCTCCCGTTGGGAAGATCCCCG
CAAAGCCAGGCATCCCTGCCAAGTTAAACCTCAAGCACCCCAAGTATCTAAATGCAAGTT
TGCACAGCGGAGTAAATAGAGACAGGTTCTACATATTAGCGTCAGCCTGGCCGTCCATTT
GGATATACTATCATAATGGTGCCTCTTGAGTCAGGTTGATTAGGTTTCGGAACACGTCTT
GCAAAATATCGGATGCTTTCCAGTTTCTTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5196#0      TTCGAAGCTTTTGCAGAAGCTTTTGAACTCGGCTCAGGTTAGCCGAGAGGAGTATGACTC 60
consensus_5196#1      ----------------------------TAGCCAGAGGCCGAGACAAGGGGGT-TTATTG 31
                                                  * * *  ***       *  ** ** * * * 

consensus_5196#0      CATGATTGATCTCCTCCTCCCTTTTGGAAGATCCACGCAG-AGCCAGGCATCCCTGCCAA 119
consensus_5196#1      CAGGTGGAAGAGAATGTCCTCAGAAGAGAGTTCCAAATGATGGCCTCTCATCTGAAATTA 91
                      ** *    *     *   * *    *  ** ****       ***   ****       *

consensus_5196#0      GTTAAACCTCAAGCAACACAAGTATCTAAATACATGTTTACACAGCGGAGTAAATAGAGA 179
consensus_5196#1      GAAAAGCTTTGGATT-CTTGTGTGTGTAATGCCCTGCCAGTTCT-TGTATCAAACTT--- 146
                      *  ** * *       *    ** * ***   * **      *   * *  ***      

consensus_5196#0      GAGGTTCTACATATCAGCGTCA---CTTGGCAGTCTATTCGGATATACTATCATAATGGT 236
consensus_5196#1      GAGGATGCAAATTCCAGTGTCAAAGTTGGAGAATACTCTGGGATGCCCGTTGGACACCAT 206
                      **** *  * **  *** ****    * *  * *    * ****   *  *    *   *

consensus_5196#0      GCCTCTTGCGTCTGGTTGTTTAGGTTTCGGAACACGTCT-TGCAAAATATCGGTTGCTCC 295
consensus_5196#1      GTCATTTGTTTATGCACCGCCTTCTGTCAGATCAAGGCAGTGGCAAATGATGGTT--CTC 264
                      * *  ***  * **          * ** ** ** * *  **  ****   ****    *

consensus_5196#0      CAGTTGCTTCAACTATCCCCTTTGCATTGGCGTCAGACGTACAAGCGGAGGNGGCACTGA 355
consensus_5196#1      GAGCTGCTTGATGCGCTCTCACTCCATTGGCTTCCTGCTCCTGCTCCAATAATGT-CAGA 323
                       ** ***** *      * *  * ******* **   *       *  *    *  * **

consensus_5196#0      TTCCTGTCATTCTCAGGAATTGTT-AGCTTTAGTGAGGAGAGCAAAAGATAAC-TGCCTC 413
consensus_5196#1      TTTGAAGCTTTTGCAGAAGCTTTTCAACTCGGCTCAGGTTAACCGAGAGGAGTATGTCTC 383
                      **     * **  *** *  * ** * **    * ***  * *  *    *   ** ***

consensus_5196#0      CA-GAACAATTTGGTCCACT-ATGGACTTTTATCTCTCATTGCTAG---CGCATTCAGAA 468
consensus_5196#1      CATGATTGATCTCCTCCTCCCGTTGGGAAGATCCCCGCAAAGCCAGGCATCCCTGCCAAG 443
                      ** **   ** *  *** *   * *        * * **  ** **     * * *  * 

consensus_5196#0      TTGTAGT----GCATCTTTGGGTTTTTTTTTTTACCTCTTTTACCGGTGTGCAGTTTGTC 524
consensus_5196#1      TTAAACCTCAAGCACCCCAAGTATCTAAATGCAAGTTTGCACAGCGGAGTAAATAGAGAC 503
                      **  *      *** *    *  * *   *   *  *     * *** **  *    * *

consensus_5196#0      AGGTTAGTACAGCCGAATTTGACCAGCTAACAACCCACTCGNGAGTCCTAATAGGTGAGT 584
consensus_5196#1      AGGTTC-TACATATTAGCGTCAGC--CTGGCCGTCCATTTGGATATACTATCATAATGGT 560
                      *****  ****    *   * * *  **  *   *** * *    * ***  *     **

consensus_5196#0      GCTAGATATCAAGN--GGTATAGTAAACCCAGTGGTTAGCATCTATAAAATTCGGAATTT 642
consensus_5196#1      GCC---TCTTGAGTCAGGTTGATTAGGTTTCGGAACACGTCTTGCAAAATATCGGATGCT 617
                      **    * *  **   ***  * **      *      *  *    ***  *****   *

consensus_5196#0      TTATGNCNGGNCAAAAAAAAAAA 665
consensus_5196#1      TTCCAGTTTCTTCAAAAAAAAAA 640
                      **           **********