cluster # 520

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Oryza sativa
cluster # 520 cluster # 520 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_520#0 length = 821 sequences # 1

consensus_520#1 length = 611 sequences # 1

consensusID : consensus_520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 821
fasta sequence

                              [TACAACTATTGTTATGTTACAGTATATAGTTTGGTATTTTAGTGTGTCACGGTTTGTCAGTAGGAATATCAAGAACAAGGAAGAAATTCCATGAGTTAACTAAATTAAGGAGGAGTATCCATTCCATGAGTTAACTAATACTAATACTATTGGCTCAAGCATCAGCTGATGAGGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAAGTAGTTAACGCTTACTCTGCTCTCTATATATCTGGTTGATCCAGCCAGCCAACTTCATCTTTGCTTGGGTTGGTGAGAATTTAGAATGTGAGGTCATGNTTGAGATTGAATGAGGACAGTTCCTGACCGGCCNGGAAGCGTTAGGAGTAATAAATTTCCGCCGTGTGTCGTGCAACAGTTCCATCCCACTGCTGATTAACTCGACTCATAACATAATATTTGCTCTCCTTCTCCTGTCATCATCTTTTGAGAACGTTGCCCCATGGAAAATTTAAGGGACTCTAACTCTCCCAATAGGGGGGGAACATTCCGGTCTGTTCCTTGGTGGGCTCGGCCGTTTGACACCCAAATAATGGCCTTTCTTCTTTTGAGGCGAGGGGTAATGTCTCTTCCCTCAATAAATGTTCTATGGTTTGGGGTCATCCTCATTTTATAAATTGGAGTAATAGATTATGGTTTACACATACCATTCAATC]

[+] EMBL AW155251             [TACAACTATTGTTATGTTACAGTATATAGTTTGGTATTTTAGTGTGTCACGGTTTGTCAGTAGGAATATCAAGAACAAGGAAGAAATTCCATGAGTTAACTAAATTAAGGAGGAGTATCCATTCCATGAGTTAACTAATACTAATACTATTGGCTCAAGCATCAGCTGATGAGGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAAGTAGTTAACGCTTACTCTGCTCTCTATATATCTGGTTGATCCAGCCAGCCAACTTCATCTTTGCTTGGGTTGGTGAGAATTTAGAATGTGAGGTCATGNTTGAGATTGAATGAGGACAGTTCCTGACCGGCCNGGAAGCGTTAGGAGTAATAAATTTCCGCCGTGTGTCGTGCAACAGTTCCATCCCACTGCTGATTAACTCGACTCATAACATAATATTTGCTCTCCTTCTCCTGTCATCATCTTTTGAGAACGTTGCCCCATGGAAAATTTAAGGGACTCTAACTCTCCCAATAGGGGGGGAACATTCCGGTCTGTTCCTTGGTGGGCTCGGCCGTTTGACACCCAAATAATGGCCTTTCTTCTTTTGAGGCGAGGGGTAATGTCTCTTCCCTCAATAAATGTTCTATGGTTTGGGGTCATCCTCATTTTATAAATTGGAGTAATAGATTATGGTTTACACATACCATTCAATC]




>consensus_520#0
TACAACTATTGTTATGTTACAGTATATAGTTTGGTATTTTAGTGTGTCACGGTTTGTCAG
TAGGAATATCAAGAACAAGGAAGAAATTCCATGAGTTAACTAAATTAAGGAGGAGTATCC
ATTCCATGAGTTAACTAATACTAATACTATTGGCTCAAGCATCAGCTGATGAGGCCTGAG
GTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCT
GCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCA
ATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAAGTAGTTAACGCTTAC
TCTGCTCTCTATATATCTGGTTGATCCAGCCAGCCAACTTCATCTTTGCTTGGGTTGGTG
AGAATTTAGAATGTGAGGTCATGNTTGAGATTGAATGAGGACAGTTCCTGACCGGCCNGG
AAGCGTTAGGAGTAATAAATTTCCGCCGTGTGTCGTGCAACAGTTCCATCCCACTGCTGA
TTAACTCGACTCATAACATAATATTTGCTCTCCTTCTCCTGTCATCATCTTTTGAGAACG
TTGCCCCATGGAAAATTTAAGGGACTCTAACTCTCCCAATAGGGGGGGAACATTCCGGTC
TGTTCCTTGGTGGGCTCGGCCGTTTGACACCCAAATAATGGCCTTTCTTCTTTTGAGGCG
AGGGGTAATGTCTCTTCCCTCAATAAATGTTCTATGGTTTGGGGTCATCCTCATTTTATA
AATTGGAGTAATAGATTATGGTTTACACATACCATTCAATC

consensusID : consensus_520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [GGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAGTTAGTTAACGCTTACTCTGCTCTCTATATATCTGTTTGATCCAGCCAGCCACCTCCATCTTTGCTTGGTTGGTTGAGATTTGAGATGTTGAGGTCCATGTTTGAGATTGAATTGAGGACAGGTTCCTGAACCGGCAGGGAGGCTGAGGAGTTAATTAATTTCCGTCTGTCTGTCGGTGCAGCCAGTTCCCATACCACCTGCTGCATCAACTCCGTACTCCATAAACATATATATTTTGCTTCTTCTCTTCTCCCTGCTCCATCGATTCTTCTTGTAAGAGCTGCTTGCTACCTAGTTGGATCAGTAGTAGAGGAGGCAGCTAGCTTAGCTAGCTACCAATTAATGGCGGGTGATCAGCTGCTCCGGCGGCTCCTGTTCCTCCTGTGNGTGGTGGCGCTGGCGGTGCCGGGGCTGGCGGCCAGGNCGGCGAACGTCAGC]

[+] EMBL CA755948             [GGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAGTTAGTTAACGCTTACTCTGCTCTCTATATATCTGTTTGATCCAGCCAGCCACCTCCATCTTTGCTTGGTTGGTTGAGATTTGAGATGTTGAGGTCCATGTTTGAGATTGAATTGAGGACAGGTTCCTGAACCGGCAGGGAGGCTGAGGAGTTAATTAATTTCCGTCTGTCTGTCGGTGCAGCCAGTTCCCATACCACCTGCTGCATCAACTCCGTACTCCATAAACATATATATTTTGCTTCTTCTCTTCTCCCTGCTCCATCGATTCTTCTTGTAAGAGCTGCTTGCTACCTAGTTGGATCAGTAGTAGAGGAGGCAGCTAGCTTAGCTAGCTACCAATTAATGGCGGGTGATCAGCTGCTCCGGCGGCTCCTGTTCCTCCTGTGNGTGGTGGCGCTGGCGGTGCCGGGGCTGGCGGCCAGGNCGGCGAACGTCAGC]




>consensus_520#1
GGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCT
TGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTC
AGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAGTTAGTTA
ACGCTTACTCTGCTCTCTATATATCTGTTTGATCCAGCCAGCCACCTCCATCTTTGCTTG
GTTGGTTGAGATTTGAGATGTTGAGGTCCATGTTTGAGATTGAATTGAGGACAGGTTCCT
GAACCGGCAGGGAGGCTGAGGAGTTAATTAATTTCCGTCTGTCTGTCGGTGCAGCCAGTT
CCCATACCACCTGCTGCATCAACTCCGTACTCCATAAACATATATATTTTGCTTCTTCTC
TTCTCCCTGCTCCATCGATTCTTCTTGTAAGAGCTGCTTGCTACCTAGTTGGATCAGTAG
TAGAGGAGGCAGCTAGCTTAGCTAGCTACCAATTAATGGCGGGTGATCAGCTGCTCCGGC
GGCTCCTGTTCCTCCTGTGNGTGGTGGCGCTGGCGGTGCCGGGGCTGGCGGCCAGGNCGG
CGAACGTCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_520#0      TACAACTATTGTTATGTTACAGTATATAGTTTGGTATTTTAGTGTGTCACGGTTTGTCAG 60
consensus_520#1      ------------------------------------------------------------
                                                                                 

consensus_520#0      TAGGAATATCAAGAACAAGGAAGAAATTCCATGAGTTAACTAAATTAAGGAGGAGTATCC 120
consensus_520#1      ------------------------------------------------------------
                                                                                 

consensus_520#0      ATTCCATGAGTTAACTAATACTAATACTATTGGCTCAAGCATCAGCTGATGAGGCCTGAG 180
consensus_520#1      ----------------------------------------------------GGCCTGAG 8
                                                                         ********

consensus_520#0      GTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCT 240
consensus_520#1      GTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCT 68
                     ************************************************************

consensus_520#0      GCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCA 300
consensus_520#1      GCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCA 128
                     ************************************************************

consensus_520#0      ATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAAGTAGTTAACGCTTAC 360
consensus_520#1      ATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAGTTAGTTAACGCTTAC 188
                     ********************************************  **************

consensus_520#0      TCTGCTCTCTATATATCTGGTTGATCCAGCCAGCCAACTTCATCTTTGCTTGGGTTGGTG 420
consensus_520#1      TCTGCTCTCTATATATCTGTTTGATCCAGCCAGCCACCTCCATCTTTGCTTGGTTGGTTG 248
                     ******************* **************** ** ************* * * **

consensus_520#0      AGAATTTAGAATGTGAGGTC-ATGNTTGAGATTGAAT-GAGGACAG-TTCCTGACCGGCC 477
consensus_520#1      AGATTTGAGATGTTGAGGTCCATGTTTGAGATTGAATTGAGGACAGGTTCCTGAACCGGC 308
                     *** ** ***   ******* *** ************ ******** ******* * * *

consensus_520#0      NGGAAGCGTTAGGAGT-AATAAATTTCCGCC-GTGTGTCG-TGCAAC-AGTTCC-ATCCC 532
consensus_520#1      AGGGAGGCTGAGGAGTTAATTAATTTCCGTCTGTCTGTCGGTGCAGCCAGTTCCCATACC 368
                      ** **  * ****** *** ******** * ** ***** **** * ****** ** **

consensus_520#0      AC-TGCTG-ATTAACTCGACTCATAACATA-ATATTTGCTCTCCTTCTCCTGTCATCATC 589
consensus_520#1      ACCTGCTGCATCAACTCCGTACTCCATAAACATATATATTTTGCTTCTTCTCTTCTCCCT 428
                     ** ***** ** *****    *   * * * **** *  * * ***** ** *  **   

consensus_520#0      TTTTGAGAACGTTGCCCCATGGAAAATTTAAGGGACTCTAACTCTCCCAATAGGGGGGGA 649
consensus_520#1      GCTCCATCGATTCTTCTTGTAAGAGCTGCTTGCTAC-CTAGTTGGATCAGTAGTAGAGGA 487
                       *  *     *   *   *   *  *    *  ** ***  *    ** ***  * ***

consensus_520#0      ACATTCCGGTCTGTTCCTTGGTGGGCT--CGGCCGTTTGACACCCAAAT-AATGGCCTTT 706
consensus_520#1      GGCAGCTAGCTTAGCTAGCTACCAATTAATGGCGGGTGATCAGCTGCTCCGGCGGCTCCT 547
                          *  *  *              *   *** * *   ** *         ***   *

consensus_520#0      CTTCTTTTGAGGCGAGG-GGTAATGTCTCTTCCCTCAATAAATGTTCTATGGTTTGGGGT 765
consensus_520#1      GTTCCTCCTGTGNGTGGTGGCGCTGGCGGTGCCGGGGCTGGCGGCCAGGNCGGCGAACGT 607
                      *** *     * * ** **   ** *  * **     *    *       *      **

consensus_520#0      CATCCTCATTTTATAAATTGGAGTAATAGATTATGGTTTACACATACCATTCAATC 821
consensus_520#1      CAGC---------------------------------------------------- 611
                     ** *