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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence
[TCTTTTTTTTTTTCAAAGTATGTGCCAAAATTCATTTCTCCTGAGAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAGAAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGTTTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATTGGAAGCCATGGCACTCCAAAATCCTATCCAGTTGAAAGAAACTTCGGTCATC]
[+] EMBL CB656267 [TCTTTTTTTTTTTCAAAGTATGTGCCAAAATTCATTTCTCCTGAGAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAGAAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGTTTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATTGGAAGCCATGGCACTCCAAAATCCTATCCAGTTGAAAGAAACTTCGGTCATC]
[+] EMBL CB647970 [ AAAGTATGTGCCAAAATTCATTTCTCTTGAGAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAGAAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGTTTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATTGGAAGCCATGGCACTCC ]
consensusID : consensus_5233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[CCAAATTCAAAAGGAAATGAATAAAAATCCCTACTCACATTTGAAGTGATCCAGTAAAAAAGGAGGCAATATTCTTGGACAGGAATTTCAAAAGTATGTGCCAAAATTCATTTCTCTTGAGAAATCATCTGACAATGTTAGATTGTTATTTTGGTGCCGGTCCATCACTACCTTCGTGAGAAAAATTTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAATCCTGAATCTTGTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGATAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATGGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTGTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTCTTGAAAGGAGGTTT]
[-] EMBL CB679962 [CCAAATTCAAAAGGAAATGAATAAAAATCCCTACTCACATTTGAAGTGATCCAGTAAAAAAGGAGGCAATATTCTTGGACAGGAATTTCAAAAGTATGTGCCAAAATTCATTTCTCTTGAGAAATCATCTGACAATGTTAGATTGTTATTTTGGTGCCGGTCCATCACTACCTTCGTGAGAAAAATTTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAGAAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAATCCTGAATCTTGTAGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTTGAACCTAGAGTACAGGAAAACTCCAGATAGAGCAACGCCAGTTCCAAGGGCATTAATAGGTGAAATGGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACAGTTGGCAACAGAATGGGTCACAGGTGATACTGTAGCCAATAAACTATAAGAAACCTGTTGGTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAACTCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGGGGCAGATAATAAAAATGACATAACAGTCATTCTTGAAAGGAGGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5233#0 ------------------------------------------------------------
consensus_5233#1 CCAAATTCAAAAGGAAATGAATAAAAATCCCTACTCACATTTGAAGTGATCCAGTAAAAA 60
consensus_5233#0 ------------TCTTTTTTT----TTTTCAAAGTATGTGCCAAAATTCATTTCTCCTGA 44
consensus_5233#1 AGGAGGCAATATTCTTGGACAGGAATTTCAAAAGTATGTGCCAAAATTCATTTCTCTTGA 120
**** *** ************************** ***
consensus_5233#0 GAAATCTTCTGACAATGTTATTTTGTTATTTTGGTGCCGGTCCATCACTACCTTCCTGAG 104
consensus_5233#1 GAAATCATCTGACAATGTTAGATTGTTATTTTGGTGCCGGTCCATCACTACCTTCGTGAG 180
****** ************* ********************************* ****
consensus_5233#0 AAAAATCTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAG 164
consensus_5233#1 AAAAATTTTATACACAAGCTTCTAAGACCCAGACAAGCTGGCAAAAGACAAATTGGAGAG 240
****** *****************************************************
consensus_5233#0 AAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAAACCTGAATCTTCT 224
consensus_5233#1 AAGCCAAGTGATTGCTTGGCGGCCCATTTCACCTCAAGAAGAGATAATCCTGAATCTTGT 300
*********************************************** ********** *
consensus_5233#0 AGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTT 284
consensus_5233#1 AGTTAAATTGCAGCTGTGTATGTTGACTCATGCAGTCTTAGCCTTTGGTTTAGCTTTTTT 360
************************************************************
consensus_5233#0 GAACCTAGAGTACAGGAAAACTCCAGCTAGAGCAACGCCAGTTCCAAGGGCATTAATAGG 344
consensus_5233#1 GAACCTAGAGTACAGGAAAACTCCAGATAGAGCAACGCCAGTTCCAAGGGCATTAATAGG 420
************************** *********************************
consensus_5233#0 TGAAATCGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACA 404
consensus_5233#1 TGAAATGGGAGTTCTGAAGAAGAGAACGGATGAGACGATGACCACAACTCGTTTGACACA 480
****** *****************************************************
consensus_5233#0 GTTGGCAACAGAATGGGTCACAGGTGATACTCTAGCCAATAAACTATAAGAAACCTGTTG 464
consensus_5233#1 GTTGGCAACAGAATGGGTCACAGGTGATACTGTAGCCAATAAACTATAAGAAACCTGTTG 540
******************************* ****************************
consensus_5233#0 GTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAAC 524
consensus_5233#1 GTAAAAATGAAAACAAGTGCCAGCAAGAGCAGCTTTCATACATAGTTCCTGTAGATTAAC 600
************************************************************
consensus_5233#0 TCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGG 584
consensus_5233#1 TCCGTTGCTCTGCAGGTACGATGGGGAAAACTTGATGCCTTCCACAGACAGCATCAGTGG 660
************************************************************
consensus_5233#0 GGCAGATAATAAAAATGACATAACAGTCATTATCGAGAAGAGGTTTATATCATCCAATGT 644
consensus_5233#1 GGCAGATAATAAAAATGACATAACAGTCATTCTTGAAAGGAGGTTT-------------- 706
******************************* * ** * *******
consensus_5233#0 TTCCTCTTTATCAGCCAGAAGTTTCTTGCTGAAAACATTTCGCGATTGATTGGTAAGATT 704
consensus_5233#1 ------------------------------------------------------------
consensus_5233#0 GGAAGCCATGGCACTCCAAAATCCTATCCAGTTGAAAGAAACTTCGGTCATC 756
consensus_5233#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||