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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 893 fasta sequence
[GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGC-GGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAA-GCGGGGGTGCCGGCGACGGAGCCGTGCTG-CCGCTGCTGAAC-GGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAA-GCCAACGTGCTGGGCATCAACCTCAA-CT-CCCATCCACCTCACCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGTTTTTGAAAAAAAA]
[+] EMBL AU101404 [GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGC GGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAA GCGGGGGTGCCGGCGACGGAGCCGTGCTG CCGCTGCTGAAC GGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAA GCCAACGTGCTGGGCATCAACCTCAA CT CCCATCCACCTCAC ]
[+] EMBL AU101405 [ GGCGGAAGCGGCGGTTACGGAGGAGGCAACGGCGGGNTACGGAGNAAGCGGCAGCAACGGCGGCGGATACGGCGNCGGCGGGGGGTCGTCGACGANCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAAGGCGGGGGTGCCGGCGACGGAGCCGTGCTGCCCGCTGCTGAACGGGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAAGGCCAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGTTTTTGAAAAAAAA]
consensusID : consensus_5296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence
[ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC]
[+] EMBL AK063684 [ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5296#0 --------------------GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGC 40
consensus_5296#1 ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGC 60
****************************************
consensus_5296#0 TAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCC 100
consensus_5296#1 TAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCC 120
************************************************************
consensus_5296#0 CTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGC 160
consensus_5296#1 CTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGC 180
************************************************************
consensus_5296#0 AGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGC 220
consensus_5296#1 AGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGC 240
************************************************************
consensus_5296#0 GGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGC 280
consensus_5296#1 GGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGC 300
************************************************************
consensus_5296#0 GGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAG 340
consensus_5296#1 GGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAG 360
************************************************************
consensus_5296#0 CTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAAGCGGGGGTGCCGGCGACGG 400
consensus_5296#1 CTGGGGGTGTGCGCGAACGTGCTGGGC--------------------------------- 387
************************* *
consensus_5296#0 AGCCGTGCTGCCGCTGCTGAACGGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACG 460
consensus_5296#1 ------------------------------------------------------------
consensus_5296#0 GCCATCAAGCCAACGTGCTGGGCATCAACCTCAACTCCCATCCACCTCACCCTCATCCTC 520
consensus_5296#1 ---ATCAACC--------------TCAACCTC----CCCATCCACCTCAGCCTCATCCTC 426
***** * ******** ************* **********
consensus_5296#0 AACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCC 580
consensus_5296#1 AACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCC 486
************************************************************
consensus_5296#0 ACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGT 640
consensus_5296#1 ACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGT 546
************************************************************
consensus_5296#0 CATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGT 700
consensus_5296#1 CATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGT 606
************************************************************
consensus_5296#0 GTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTC 760
consensus_5296#1 GTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTC 666
************************************************************
consensus_5296#0 CTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATG 820
consensus_5296#1 CTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATG 726
************************************************************
consensus_5296#0 TCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGT 880
consensus_5296#1 TCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC----- 781
*******************************************************
consensus_5296#0 TTTTGAAAAAAAA 893
consensus_5296#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||