cluster # 5317

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Oryza sativa
cluster # 5317 cluster # 5317 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5317#0 length = 705 sequences # 1

consensus_5317#1 length = 565 sequences # 1
consensus_5317#2 length = 553 sequences # 1

consensusID : consensus_5317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [GCCATCAGTGGTCAGTGGTGTGATCAGTTGGAATCTAGCTAGCTAGAAGGTATAGAGATATTAGTGATGGCCCCGGCCTTTCTCTCCGACGAGCTCGCCGTCACGGTGTTGGCGGAGAGGCTGTAGAAGGTGTTCATGGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGGTTGAGGGGAATGGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGGTCGGTTTCGAACAATAGCATTGGCACATTTTCACTTCGTACACCTGTAATTTTGGAAAAGAAATTTTGGGAGGTGGGGGTGAGGAGCTTAATTTTCATCCTTTAGGCTAAGCTCGGGAGTGAGGGTTGGGAACCTTCACTTTCAGCATGCAAAATGAAGCGGCAGTTAGCGCATGACTAATTAAGTTTTAGCTAAAATAAGCATTGAAATAGATTAATATGATTTTCTAAAACAACTTTCATATAGATATTTTTTTGTAAAAACAAAATTTAGAAGTTTGATAAGCATACCTGCGAAAAACGAGGTAGAAGTTTGGAAGGAAAGTTTAGAACACAGCCTAGTTTTTTTTTTTTTTTGGATCTTTCTACTAACCTAGCCTCATCTGTCACTCGGTATCTTGAGATAAGTTGAGATCTTAACTAAGATAGTGTTTGGGAAGAAGTGACTAAAGTTTAGTCTCTCA]

[+] EMBL CB676941             [GCCATCAGTGGTCAGTGGTGTGATCAGTTGGAATCTAGCTAGCTAGAAGGTATAGAGATATTAGTGATGGCCCCGGCCTTTCTCTCCGACGAGCTCGCCGTCACGGTGTTGGCGGAGAGGCTGTAGAAGGTGTTCATGGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGGTTGAGGGGAATGGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGGTCGGTTTCGAACAATAGCATTGGCACATTTTCACTTCGTACACCTGTAATTTTGGAAAAGAAATTTTGGGAGGTGGGGGTGAGGAGCTTAATTTTCATCCTTTAGGCTAAGCTCGGGAGTGAGGGTTGGGAACCTTCACTTTCAGCATGCAAAATGAAGCGGCAGTTAGCGCATGACTAATTAAGTTTTAGCTAAAATAAGCATTGAAATAGATTAATATGATTTTCTAAAACAACTTTCATATAGATATTTTTTTGTAAAAACAAAATTTAGAAGTTTGATAAGCATACCTGCGAAAAACGAGGTAGAAGTTTGGAAGGAAAGTTTAGAACACAGCCTAGTTTTTTTTTTTTTTTGGATCTTTCTACTAACCTAGCCTCATCTGTCACTCGGTATCTTGAGATAAGTTGAGATCTTAACTAAGATAGTGTTTGGGAAGAAGTGACTAAAGTTTAGTCTCTCA]




>consensus_5317#0
GCCATCAGTGGTCAGTGGTGTGATCAGTTGGAATCTAGCTAGCTAGAAGGTATAGAGATA
TTAGTGATGGCCCCGGCCTTTCTCTCCGACGAGCTCGCCGTCACGGTGTTGGCGGAGAGG
CTGTAGAAGGTGTTCATGGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGAC
GACATTGTGGTTGAGGGGAATGGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCC
GGTCGGTTTCGAACAATAGCATTGGCACATTTTCACTTCGTACACCTGTAATTTTGGAAA
AGAAATTTTGGGAGGTGGGGGTGAGGAGCTTAATTTTCATCCTTTAGGCTAAGCTCGGGA
GTGAGGGTTGGGAACCTTCACTTTCAGCATGCAAAATGAAGCGGCAGTTAGCGCATGACT
AATTAAGTTTTAGCTAAAATAAGCATTGAAATAGATTAATATGATTTTCTAAAACAACTT
TCATATAGATATTTTTTTGTAAAAACAAAATTTAGAAGTTTGATAAGCATACCTGCGAAA
AACGAGGTAGAAGTTTGGAAGGAAAGTTTAGAACACAGCCTAGTTTTTTTTTTTTTTTGG
ATCTTTCTACTAACCTAGCCTCATCTGTCACTCGGTATCTTGAGATAAGTTGAGATCTTA
ACTAAGATAGTGTTTGGGAAGAAGTGACTAAAGTTTAGTCTCTCA

consensusID : consensus_5317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [ATCTTGACCATGCCAAAATACCCATCCACCATCGTCTTCTCCTGCTCCGGCGACAACAAGCTGCCGTCGGCGAGCTCATACTCCACCTTGAACTTGGCCACGCAGGAGCCATCGCCGGTGCCCTCCATCTTCTTCTCCGTCGAGTGCGACTTGAGCTTGCCCACCTTGCTTTCTGCCTCCAGCACCTCTGACTTTAGCACGCGTGCTGCATTGTCACACACCGCCACTCGGGTCTTGAATGAATTCCCGACTCCCGCATCTGCATATAATAGGAATACTCCCTCCGTTTCAAAATATTTGACACCTTTGACTTTTTAACACATGTTTGACCGTTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACTATATGTGCACATGAAAGTATATTTAACAATGAGTCAAATGATACGAAAATAATAAATAATTACTTAAATTTTTTGAATAAGACAAATGATCAAACACATACGAAAAAATCAGCGGTGTCAAACATTTTGAAACGGAGGGAGTATTTTCTGTTATACATACCCAATCAATTCGCCTTGCACAGCTGTAATTTTA]

[+] EMBL CB676942             [ATCTTGACCATGCCAAAATACCCATCCACCATCGTCTTCTCCTGCTCCGGCGACAACAAGCTGCCGTCGGCGAGCTCATACTCCACCTTGAACTTGGCCACGCAGGAGCCATCGCCGGTGCCCTCCATCTTCTTCTCCGTCGAGTGCGACTTGAGCTTGCCCACCTTGCTTTCTGCCTCCAGCACCTCTGACTTTAGCACGCGTGCTGCATTGTCACACACCGCCACTCGGGTCTTGAATGAATTCCCGACTCCCGCATCTGCATATAATAGGAATACTCCCTCCGTTTCAAAATATTTGACACCTTTGACTTTTTAACACATGTTTGACCGTTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACTATATGTGCACATGAAAGTATATTTAACAATGAGTCAAATGATACGAAAATAATAAATAATTACTTAAATTTTTTGAATAAGACAAATGATCAAACACATACGAAAAAATCAGCGGTGTCAAACATTTTGAAACGGAGGGAGTATTTTCTGTTATACATACCCAATCAATTCGCCTTGCACAGCTGTAATTTTA]




>consensus_5317#1
ATCTTGACCATGCCAAAATACCCATCCACCATCGTCTTCTCCTGCTCCGGCGACAACAAG
CTGCCGTCGGCGAGCTCATACTCCACCTTGAACTTGGCCACGCAGGAGCCATCGCCGGTG
CCCTCCATCTTCTTCTCCGTCGAGTGCGACTTGAGCTTGCCCACCTTGCTTTCTGCCTCC
AGCACCTCTGACTTTAGCACGCGTGCTGCATTGTCACACACCGCCACTCGGGTCTTGAAT
GAATTCCCGACTCCCGCATCTGCATATAATAGGAATACTCCCTCCGTTTCAAAATATTTG
ACACCTTTGACTTTTTAACACATGTTTGACCGTTCGTCTTATTCAAAAAAAAATTGTGAA
ATATGTAAAACTATATGTGCACATGAAAGTATATTTAACAATGAGTCAAATGATACGAAA
ATAATAAATAATTACTTAAATTTTTTGAATAAGACAAATGATCAAACACATACGAAAAAA
TCAGCGGTGTCAAACATTTTGAAACGGAGGGAGTATTTTCTGTTATACATACCCAATCAA
TTCGCCTTGCACAGCTGTAATTTTA

consensusID : consensus_5317#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [TCTCCGACGAGCTTCCCCGTCACGGTGTTGCCGGAGAGCCTGTAGAAGGTGTTCATGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGTTGAGGGGAATGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGATGCGGGAGTCGGGAATACATACAAGACCCGAGTGCGGTGTGTGACAATGCAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGTCGCACTCAACGGAGACGAAGCTGGAGGGCACCGGCGATGGCTCCTGCGTGGCCAAGCTCAAGGTGGAGTACGAGCTCGCCGACGGCAGCTCAGCTGTCGCCGGAGCAGGAGAAGACGATGGTCGACGGCTACTTCGGCATGCTCAAGATGATGGAGGCGTACCTCGCCGCTCACCCTGCCGAATTCGCCTGAAAACTGTCTCAACCAACACAATCCATGGCTGATAATTAAATAATGCGAGCTCCAATTTTCTCGTGGCGTTTGATTTTTTTGAGACAGTTAAAAA]

[+] EMBL BI799690             [TCTCCGACGAGCTTCCCCGTCACGGTGTTGCCGGAGAGCCTGTAGAAGGTGTTCATGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGTTGAGGGGAATGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGATGCGGGAGTCGGGAATACATACAAGACCCGAGTGCGGTGTGTGACAATGCAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGTCGCACTCAACGGAGACGAAGCTGGAGGGCACCGGCGATGGCTCCTGCGTGGCCAAGCTCAAGGTGGAGTACGAGCTCGCCGACGGCAGCTCAGCTGTCGCCGGAGCAGGAGAAGACGATGGTCGACGGCTACTTCGGCATGCTCAAGATGATGGAGGCGTACCTCGCCGCTCACCCTGCCGAATTCGCCTGAAAACTGTCTCAACCAACACAATCCATGGCTGATAATTAAATAATGCGAGCTCCAATTTTCTCGTGGCGTTTGATTTTTTTGAGACAGTTAAAAA]




>consensus_5317#2
TCTCCGACGAGCTTCCCCGTCACGGTGTTGCCGGAGAGCCTGTAGAAGGTGTTCATGACG
CGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGTTGAGGGGAATGC
GGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGATGCGGGAGTCGGGAATACATAC
AAGACCCGAGTGCGGTGTGTGACAATGCAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGG
CAGAAAGCAAGGTGGGCAAGCTCAAGTCGCACTCAACGGAGACGAAGCTGGAGGGCACCG
GCGATGGCTCCTGCGTGGCCAAGCTCAAGGTGGAGTACGAGCTCGCCGACGGCAGCTCAG
CTGTCGCCGGAGCAGGAGAAGACGATGGTCGACGGCTACTTCGGCATGCTCAAGATGATG
GAGGCGTACCTCGCCGCTCACCCTGCCGAATTCGCCTGAAAACTGTCTCAACCAACACAA
TCCATGGCTGATAATTAAATAATGCGAGCTCCAATTTTCTCGTGGCGTTTGATTTTTTTG
AGACAGTTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5317#0      GCCATCAGTGGTCAGTGGTGTGATCAGTTGGAATCTAGCTAGCTAGAAGGTATAGAGATA 60
consensus_5317#2      ------------------------------------------------------------
consensus_5317#1      ------------------------------------------------------------
                                                                                  

consensus_5317#0      TTAGTGATGGCCCCGGCCTTTCTCTCCGACGAGCT-CGCCGTCACGGTGTTGGCGGAGAG 119
consensus_5317#2      ----------------------TCTCCGACGAGCTTCCCCGTCACGGTGTTGCCGGAGAG 38
consensus_5317#1      ----------------------------------------ATCTTGACCATGCCAAAATA 20
                                                               **  *    ** *  *   

consensus_5317#0      GCTGTAGAAGGTGTTCATGGACGCGTCCGCCATGCCCAAG--GTCTGTGCCGGCTTCGTC 177
consensus_5317#2      CCTGTAGAAGGTGTTCATG-ACGCGTCCGCCATGCCCAAG--GTCTGTGCCGGCTTCGTC 95
consensus_5317#1      CCCATCCACCATCGTCTTCTCCTGCTCCGGCGACAACAAGCTGCCGTCGGCGAGCTCATA 80
                       *  *  *   *  ** *   *   **** *     ****  * *   * **   ** * 

consensus_5317#0      GACGACATTGTGGTTGAGGGGAATGGCGGTCCAGGCACCATCTACACCATGAAGCTTAAC 237
consensus_5317#2      GACGACATTGTG-TTGAGGGGAATG-CGGTCCAGGCACCATCTACACCATGAAGCTTAAC 153
consensus_5317#1      CTCCACCTTGAACTTG---GCCACGCAGG---AGCCATCGCCGGTGCCCTCCATCTTCTT 134
                        * ** ***   ***   *  * *  **   ** ** *  *    ** *  * ***   

consensus_5317#0      CCCGGTC------GGTTTCGAACAATAGCATTGGC---ACATTTTCACTTCGTACACCTG 288
consensus_5317#2      CCCGATGCGG---GAGTCGGGAATACATACAAGAC---CCGAGTGCGGTGTGTGACAATG 207
consensus_5317#1      CTCCGTCGAGTGCGACTTGAGCTTGCCCACCTTGCTTTCTGCCTCCAGCACCTCTGACTT 194
                      * *  *       *  *                 *        * *      *     * 

consensus_5317#0      TAATTTTGGAAAAGAAATTTTGGGAGGTGGGGGTGAGGAGCTTAATTTTCATCCTTTAGG 348
consensus_5317#2      CAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGT 267
consensus_5317#1      TAGCACGCGTGCTGCATTGTCACACACCGCCACTCGGGTCTTGAATGAATTCCCGACTCC 254
                       *      *      * *          *                *       *      

consensus_5317#0      CTAAGCT--CGGGAGTGAGGGTTGGGAACCTTCACTTTCAG-CATGCAAAATGAAGCGGC 405
consensus_5317#2      CGCACTCAACGGAGACGAAGCTGGAGGGCACCGGCGATGGCTCCTGCGTGGCCAAGCTCA 327
consensus_5317#1      CGCATCTGCATATAATAGGAAT--ACTCCCTCCGTTTCAAAATATTTGACACCTTTGACT 312
                      *  *                 *      *               *               

consensus_5317#0      AGTTAGCGCATGACTAA--TTAAGTTTTAGCTAAAATAAG-CATTGAAATAGATTAATAT 462
consensus_5317#2      AGGTGGAGTACGAGCTC--GCCGACGGCAGCTCAGCTGT--CGCCGGAGCAGGAGAAGAC 383
consensus_5317#1      TTTTAACACATGTTTGACCGTTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACT 372
                         *     * *                *    *           * *  *    **   

consensus_5317#0      GATTTTCTAAAACAACTTTCATATAGATATTTTTTTGTAAAAACAAAATTTAGAAGTTTG 522
consensus_5317#2      GATGGTCGACGGCTACTTCGGCATG--------CTCAAGATGATGGAGGC--GTACCTCG 433
consensus_5317#1      ATATGTGCACATGAAAGTATATTTAACAATGAGTCAAATGATACGAAAAT-AATAAATAA 431
                           *  *     *  *     *                  *   *       *  *  

consensus_5317#0      ATAAGCATACCTGCGAAAAACGAGGTAGAAGTTTGGAAGGAAAGTTTAGAACACAGCCTA 582
consensus_5317#2      CCGCTCAC-CCTGCCGAATTCGCCTGAAAACTGTCTCAACCA--------ACACAATCCA 484
consensus_5317#1      TTACTTAAATTTTTTGAATAAGAC---AAATGATCAAACACATACGAAAAAATCAGCGGT 488
                            *    *    **   *      **   *   *   *        *  **     

consensus_5317#0      GTTTTTTTTTTTTTTTGGATCTTTCTACTAA-CCTAGCCTCATCTGTC-ACTCGGTATCT 640
consensus_5317#2      ----TGGCTGATAATTAAATAATGCGAGCT--CCAATTTTCTCGTGGC-GTTTGATTTTT 537
consensus_5317#1      G---TCAAACATTTTGAAACGGAGGGAGTATTTTCTGTTATACATACCCAATCAATTCGC 545
                          *      *  *   *       *                 *  *   *   *    

consensus_5317#0      TGAGATAAGTTGAGATCTTAACTAAGATAGTGTTTGGGAAGAAGTGACTAAAGTTTAGTC 700
consensus_5317#2      TTGAGACAGTTAAAAA-------------------------------------------- 553
consensus_5317#1      CTTGCACAGCTGTAATTTTA---------------------------------------- 565
                             ** *   *                                             

consensus_5317#0      TCTCA 705
consensus_5317#2      -----
consensus_5317#1      -----