cluster # 5322

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Oryza sativa
cluster # 5322 cluster # 5322 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5322#0 length = 735 sequences # 2

consensus_5322#1 length = 701 sequences # 1

consensusID : consensus_5322#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 735
fasta sequence

                              [AGGGAATTGGACCCAATATGGATGGAANCATGAATAGTCATTAGTTCCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTANTTTAATTAATATATTAGATTAGCAATCTATTTTTCCATACACA-NTNTCCGTAACAAAACTAATTAACTATTAACTAGTTAAACTATTGCAATGAAAAGAAAGTTTTTTGGTAGTTATAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACGCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAAAAAAAAAAAAAAAGCGGNCG]

[-] EMBL AU162038             [AGGGAATTGGACCCAATATGGATGGAANCATGAATAGTCATTAGTTCCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTANTTTAATTAATATATTAGATTAGCAATCTATTTTTCCATACACA NTN                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA765910             [                                AATAGTCATTAGTTTCGTTTTTTGTATACTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAAATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTAATTTAATTAATATATTAGATTAGCAATCTATTTTTCCATAC CATTTTTCCGTAACAAAACTAATTAACTATTAACTAGTTAAACTATTGCAATGAAAAGAAAGTTTTTTGGTAGTTATAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACGCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAAAAAAAAAAAAAAAGCGGNCG]




>consensus_5322#0
AGGGAATTGGACCCAATATGGATGGAANCATGAATAGTCATTAGTTCCGTTTTTTGTATA
CTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTA
TCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAA
ATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTC
CATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTG
ACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTANTTTAATTAATATATTAG
ATTAGCAATCTATTTTTCCATACACANTNTCCGTAACAAAACTAATTAACTATTAACTAG
TTAAACTATTGCAATGAAAAGAAAGTTTTTTGGTAGTTATAGAATTCTCGTATTTCTTCG
ACTCGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCTGTAAAGTAA
AATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACGCCAAATCA
AAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCAT
CTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAAAAAAA
AAAAAAAAGCGGNCG

consensusID : consensus_5322#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence

                              [GCCGCGGCACCCGCCGCTATTACCCTTCGTGCTCCCCTCGGCAAAACGGCGCTCCGGCGGCGCCGCGCCCAGTCGGATGTGCGCGGTAAGGCGTCTACGCCGCCGCCGGCANGCGGCGCGCCGCACCGTACCCGGGNAGCCGATTGCGGGGGCGCCTCCCTCTGGCCTTTCGAGCCTCCGCCGTCTGAGCGCTGCGTGCGCGATCAGCCCGNCCGGTGTACTCGCTGCCCGCGCCTCGCGCGGCCGCCCGACTCGCGCGCGCCCGTCGCCCGACACTCCGGGACGCGCTGTGCGGTGTGCGCCCGCCCTCGGTGCCGCGGTCGACTCGCTGGTGGGCGGGGGGTGGTCCATCGCCGGTGGCCAGGCCACACGCTCGTCTGCTGTCCTTATTGGACAATGGAGGGGGGGGGGGGGGGGAGNNTTTTTTTTGGGGTAAGGTTATTAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAATGAAGTAAAAAAAACGCATTTNNTCNCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAA]

[-] EMBL CA760085             [GCCGCGGCACCCGCCGCTATTACCCTTCGTGCTCCCCTCGGCAAAACGGCGCTCCGGCGGCGCCGCGCCCAGTCGGATGTGCGCGGTAAGGCGTCTACGCCGCCGCCGGCANGCGGCGCGCCGCACCGTACCCGGGNAGCCGATTGCGGGGGCGCCTCCCTCTGGCCTTTCGAGCCTCCGCCGTCTGAGCGCTGCGTGCGCGATCAGCCCGNCCGGTGTACTCGCTGCCCGCGCCTCGCGCGGCCGCCCGACTCGCGCGCGCCCGTCGCCCGACACTCCGGGACGCGCTGTGCGGTGTGCGCCCGCCCTCGGTGCCGCGGTCGACTCGCTGGTGGGCGGGGGGTGGTCCATCGCCGGTGGCCAGGCCACACGCTCGTCTGCTGTCCTTATTGGACAATGGAGGGGGGGGGGGGGGGGAGNNTTTTTTTTGGGGTAAGGTTATTAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGAAAGAAAAAATGAAGTAAAAAAAACGCATTTNNTCNCTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAA]




>consensus_5322#1
GCCGCGGCACCCGCCGCTATTACCCTTCGTGCTCCCCTCGGCAAAACGGCGCTCCGGCGG
CGCCGCGCCCAGTCGGATGTGCGCGGTAAGGCGTCTACGCCGCCGCCGGCANGCGGCGCG
CCGCACCGTACCCGGGNAGCCGATTGCGGGGGCGCCTCCCTCTGGCCTTTCGAGCCTCCG
CCGTCTGAGCGCTGCGTGCGCGATCAGCCCGNCCGGTGTACTCGCTGCCCGCGCCTCGCG
CGGCCGCCCGACTCGCGCGCGCCCGTCGCCCGACACTCCGGGACGCGCTGTGCGGTGTGC
GCCCGCCCTCGGTGCCGCGGTCGACTCGCTGGTGGGCGGGGGGTGGTCCATCGCCGGTGG
CCAGGCCACACGCTCGTCTGCTGTCCTTATTGGACAATGGAGGGGGGGGGGGGGGGGAGN
NTTTTTTTTGGGGTAAGGTTATTAGAATTCTCGTATTTCTTCGACTCGAATACCAAAAGA
AAGAAAAAATGAAGTAAAAAAAACGCATTTNNTCNCTGTAAAGTAAAATTAAGGTCTTTG
CTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACTCCAAATCAAAATTGAATCCATT
CTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGGATCATCTGGATATTTAAAA
AATCGCGGATCGAGATCGTTTTCGCTTAACCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5322#0      AGGGAATTGGACCCAATATGGATGGAANCATGAATAGTCATTAGTTCCGTTTTTTGTATA 60
consensus_5322#1      --GCCGCGGCACCCGCCGCT-ATTACCCTTCGTGCTCCCCTCGGCAAAACGGCGCTCCGG 57
                        *     * ****       **        *      * *  *                

consensus_5322#0      CTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTA 120
consensus_5322#1      CGGCGCCGCGCCCAGTCGGATGTGCGCGGTAAGGCGTCTACGCCGCCGCCGGCANGCGGC 117
                      *     *   *    *  * * *    **  *    *  *                    

consensus_5322#0      TCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAAACCCATATTCTATCATATGAATGAA 180
consensus_5322#1      GCGCCGCACCGTACCCGGGNAGCCGATTGCGGGGGCGCCTCCCTCTGGCCTTTCGAGCCT 177
                       **    *   * * *    **** ***         **    ***  * * *  *    

consensus_5322#0      ATATAGTTCGAAAAAAGGGAATA-AACAAGTTTGCTTAAGACTTATTTATTATGGAATTT 239
consensus_5322#1      CCGCCGTCTGAGCGCTGCGTGCGCGATCAGCCCGNCC--GGTGTACTCGCTGC------C 229
                           **  **     * *      *  **   *     *   ** *   *         

consensus_5322#0      CCATCCTCAACAGAGGACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATT 299
consensus_5322#1      CGCGCCTCGCGCGGCCGCCCGACTCGCGCGCGCCCGTCGCCCGACACTCCGGGACGCGCT 289
                      *   ****    *    * ***   *  *   **  **     *   *  * ** *   *

consensus_5322#0      GACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTANTTTAATTAATATATTA 359
consensus_5322#1      GTGCGGTGTGCGCCCG-----CCCTCGGTGCCGCGGTCGACTCGC-----TGGTGGGCGG 339
                      *     * * *  *       *  **     * ** *  * *        *  *      

consensus_5322#0      GATTAGCAATCTATTTTTCCATACACANTNTCCGTAACAAAACTAATTAACTATTAACTA 419
consensus_5322#1      GG--GGTGGTCCATCGC-CGGTGGCCAGGCCACACGCTCGTCTGCTGTCCTTATTGGACA 396
                      *    *   ** **    *  *   **     *              *   ****    *

consensus_5322#0      GTTAAACTATTGCAATGAAAAGAAAGTTTTTT---GGTA--GTTAT-AGAATTCTCGTAT 473
consensus_5322#1      ATGGAGGGGGGGGGGGGGGGGAGNNTTTTTTTTGGGGTAAGGTTATTAGAATTCTCGTAT 456
                       *  *      *    *         ******   ****  ***** *************

consensus_5322#0      TTCTTCGACTCGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAACGCATTTCCT-- 531
consensus_5322#1      TTCTTCGACTCGAATACCAAAAGAAAGAAAAAA-TGAAGTAAAAAAAACGCATTTNNTCN 515
                      ********************************* *********************  *  

consensus_5322#0      --GTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCA 589
consensus_5322#1      CTGTAAAGTAAAATTAAGGTCTTTGCTTTTACTTATTTTTTCTTTTACCTAAAAGAAGCA 575
                        **********************************************************

consensus_5322#0      ACGCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCG 649
consensus_5322#1      ACTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCG 635
                      ** *********************************************************

consensus_5322#0      GGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAA 709
consensus_5322#1      GGATGGATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAA 695
                      ************************************************************

consensus_5322#0      AAAAAAAAAAAAAAAAAAAGCGGNCG 735
consensus_5322#1      AAAAAA-------------------- 701
                      ******