cluster # 543

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 543 cluster # 543 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_543#0 length = 787 sequences # 1

consensus_543#1 length = 412 sequences # 1

consensusID : consensus_543#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence

                              [AAAAACAACAAAACGCCTTCTCTGAGTTCGTTAGCATGCCTCTCCTGCTATGCCGCCGGCGGCGGCTGCTGCCGCTCCTCCTTGTCTTGGTTGCCGCTTCCCATGGCGATGCTTCCGGCGACACCTACGACACCTCCATGTGCCTGCAGAAACCAACCACCTGCGGGAACGTCAGTATCAGCTACCCGTTCTACTTTGCTACGAAGACGAAAGATATCAACGGGTCCAGCAACTCATACTGCGGATACCCCGGCTTGGCGATCGATTGTGACGACGCGCAGCTCATCCTGCAACTCAACGGCGCCGAGAAGTACAAGGTTAACTACATCAACTACGGGAACGGGAGCATCACCAACGTGTCCCTGGTCGATCAGGAGGTCGTCGACGACAGCAGCGGCTGCCCAAGAGTCGATCACAACGTGACCTTCTCACAGGGCTCATGGCTGCTCTTCCCTGCTGGCATGCCGTTGGATTACCTCGTCTTCTTTCTCGGCTGCTCCTTCCCGAATCTCTTCCTCCCACCGGAAAACATCGACCCGATCACCTGCAGCTTTATCGGTCTCAATGGACAGTCCTACGTGCTTCCGAAGGATCAAGTGCCGCCTGGGAGCTGGTCGCAGTTTTGCCAGAAAATCTACGAAGTTCCTGTGGTCAAATATCAATCGATGGACCCAAAAGGTGACGCATGGAGGAAGGGTGGATACGGCCAGGTTCTTCGTCAGGGCTTCCCGTTGTCAGTGAACGATAGCAGGAGGCCCCCCAATTGTACGCAGTGCGAGGAAGTCAA]

[+] EMBL CB625774             [AAAAACAACAAAACGCCTTCTCTGAGTTCGTTAGCATGCCTCTCCTGCTATGCCGCCGGCGGCGGCTGCTGCCGCTCCTCCTTGTCTTGGTTGCCGCTTCCCATGGCGATGCTTCCGGCGACACCTACGACACCTCCATGTGCCTGCAGAAACCAACCACCTGCGGGAACGTCAGTATCAGCTACCCGTTCTACTTTGCTACGAAGACGAAAGATATCAACGGGTCCAGCAACTCATACTGCGGATACCCCGGCTTGGCGATCGATTGTGACGACGCGCAGCTCATCCTGCAACTCAACGGCGCCGAGAAGTACAAGGTTAACTACATCAACTACGGGAACGGGAGCATCACCAACGTGTCCCTGGTCGATCAGGAGGTCGTCGACGACAGCAGCGGCTGCCCAAGAGTCGATCACAACGTGACCTTCTCACAGGGCTCATGGCTGCTCTTCCCTGCTGGCATGCCGTTGGATTACCTCGTCTTCTTTCTCGGCTGCTCCTTCCCGAATCTCTTCCTCCCACCGGAAAACATCGACCCGATCACCTGCAGCTTTATCGGTCTCAATGGACAGTCCTACGTGCTTCCGAAGGATCAAGTGCCGCCTGGGAGCTGGTCGCAGTTTTGCCAGAAAATCTACGAAGTTCCTGTGGTCAAATATCAATCGATGGACCCAAAAGGTGACGCATGGAGGAAGGGTGGATACGGCCAGGTTCTTCGTCAGGGCTTCCCGTTGTCAGTGAACGATAGCAGGAGGCCCCCCAATTGTACGCAGTGCGAGGAAGTCAA]




>consensus_543#0
AAAAACAACAAAACGCCTTCTCTGAGTTCGTTAGCATGCCTCTCCTGCTATGCCGCCGGC
GGCGGCTGCTGCCGCTCCTCCTTGTCTTGGTTGCCGCTTCCCATGGCGATGCTTCCGGCG
ACACCTACGACACCTCCATGTGCCTGCAGAAACCAACCACCTGCGGGAACGTCAGTATCA
GCTACCCGTTCTACTTTGCTACGAAGACGAAAGATATCAACGGGTCCAGCAACTCATACT
GCGGATACCCCGGCTTGGCGATCGATTGTGACGACGCGCAGCTCATCCTGCAACTCAACG
GCGCCGAGAAGTACAAGGTTAACTACATCAACTACGGGAACGGGAGCATCACCAACGTGT
CCCTGGTCGATCAGGAGGTCGTCGACGACAGCAGCGGCTGCCCAAGAGTCGATCACAACG
TGACCTTCTCACAGGGCTCATGGCTGCTCTTCCCTGCTGGCATGCCGTTGGATTACCTCG
TCTTCTTTCTCGGCTGCTCCTTCCCGAATCTCTTCCTCCCACCGGAAAACATCGACCCGA
TCACCTGCAGCTTTATCGGTCTCAATGGACAGTCCTACGTGCTTCCGAAGGATCAAGTGC
CGCCTGGGAGCTGGTCGCAGTTTTGCCAGAAAATCTACGAAGTTCCTGTGGTCAAATATC
AATCGATGGACCCAAAAGGTGACGCATGGAGGAAGGGTGGATACGGCCAGGTTCTTCGTC
AGGGCTTCCCGTTGTCAGTGAACGATAGCAGGAGGCCCCCCAATTGTACGCAGTGCGAGG
AAGTCAA

consensusID : consensus_543#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [CAAAAACAAAAAACGCCTTCTCTGAGTTCGTTAGCCATGCCTCTCCTGCTATGCCGGCGGCGGCGGCGGCTGCTGCCGTNCCTCCTTGTCTTGGTTGCCGCTTCCCATGGCGCTTCCAATGACACCTACGACACCTCCATGTGCCTGCAGGAAACAACCACCTGCGGGGATGTCAGTATCAGATACCCGTTCTACTTTTCTGATAAGACGGGATATATCAACGGGTCCAGCAACTCATACTGCGGATACCCCGGCCTGGCGATCGATTGTAACGACGGCAAGCCCATCCTGCAACTCAACGGCGCCGAGAAGTACAAGGTTAACTACATCAACGTTGGGAGCATCACCAACGTGTCCCTGGTCGATAAGGAGGTCGTCGACGACAGCAGCGGNTNCCAAGAGTCGTCANAAC]

[+] EMBL C26494               [CAAAAACAAAAAACGCCTTCTCTGAGTTCGTTAGCCATGCCTCTCCTGCTATGCCGGCGGCGGCGGCGGCTGCTGCCGTNCCTCCTTGTCTTGGTTGCCGCTTCCCATGGCGCTTCCAATGACACCTACGACACCTCCATGTGCCTGCAGGAAACAACCACCTGCGGGGATGTCAGTATCAGATACCCGTTCTACTTTTCTGATAAGACGGGATATATCAACGGGTCCAGCAACTCATACTGCGGATACCCCGGCCTGGCGATCGATTGTAACGACGGCAAGCCCATCCTGCAACTCAACGGCGCCGAGAAGTACAAGGTTAACTACATCAACGTTGGGAGCATCACCAACGTGTCCCTGGTCGATAAGGAGGTCGTCGACGACAGCAGCGGNTNCCAAGAGTCGTCANAAC]




>consensus_543#1
CAAAAACAAAAAACGCCTTCTCTGAGTTCGTTAGCCATGCCTCTCCTGCTATGCCGGCGG
CGGCGGCGGCTGCTGCCGTNCCTCCTTGTCTTGGTTGCCGCTTCCCATGGCGCTTCCAAT
GACACCTACGACACCTCCATGTGCCTGCAGGAAACAACCACCTGCGGGGATGTCAGTATC
AGATACCCGTTCTACTTTTCTGATAAGACGGGATATATCAACGGGTCCAGCAACTCATAC
TGCGGATACCCCGGCCTGGCGATCGATTGTAACGACGGCAAGCCCATCCTGCAACTCAAC
GGCGCCGAGAAGTACAAGGTTAACTACATCAACGTTGGGAGCATCACCAACGTGTCCCTG
GTCGATAAGGAGGTCGTCGACGACAGCAGCGGNTNCCAAGAGTCGTCANAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_543#0      -AAAAACAACAAAACGCCTTCTCTGAGTTCGTTAGC-ATGCCTCTCCTGCTATGCCGCCG 58
consensus_543#1      CAAAAACAA-AAAACGCCTTCTCTGAGTTCGTTAGCCATGCCTCTCCTGCTATGCCGGCG 59
                      ******** ************************** ******************** **

consensus_543#0      GCGGCGGC---TGCTGCCGCTCCTCCTTGTCTTGGTTGCCGCTTCCCATGGCGATGCTTC 115
consensus_543#1      GCGGCGGCGGCTGCTGCCGTNCCTCCTTGTCTTGGTTGCCGCTTCCCATGGC---GCTTC 116
                     ********   ********  *******************************   *****

consensus_543#0      CGGCGACACCTACGACACCTCCATGTGCCTGCAGAAACCAACCACCTGCGGGAACGTCAG 175
consensus_543#1      CAATGACACCTACGACACCTCCATGTGCCTGCAGGAAACAACCACCTGCGGGGATGTCAG 176
                     *   ****************************** ** ************** * *****

consensus_543#0      TATCAGCTACCCGTTCTACTTTGCTACGAAGACGAAAGATATCAACGGGTCCAGCAACTC 235
consensus_543#1      TATCAGATACCCGTTCTACTTTTCTGATAAGACGGGATATATCAACGGGTCCAGCAACTC 236
                     ****** *************** **   ******  * **********************

consensus_543#0      ATACTGCGGATACCCCGGCTTGGCGATCGATTGTGACGACGCGCAGCTCATCCTGCAACT 295
consensus_543#1      ATACTGCGGATACCCCGGCCTGGCGATCGATTGTAACGACGGCAAGCCCATCCTGCAACT 296
                     ******************* ************** ******   *** ************

consensus_543#0      CAACGGCGCCGAGAAGTACAAGGTTAACTACATCAACTACGGGAACGGGAGCATCACCAA 355
consensus_543#1      CAACGGCGCCGAGAAGTACAAGGTTAACTACATCAAC------GTTGGGAGCATCACCAA 350
                     *************************************         **************

consensus_543#0      CGTGTCCCTGGTCGATCAGGAGGTCGTCGACGACAGCAGCGGCTGCCCAAGAGTCGATCA 415
consensus_543#1      CGTGTCCCTGGTCGATAAGGAGGTCGTCGACGACAGCAGCGGNTNCC-AAGAGTCG-TCA 408
                     **************** ************************* * ** ******** ***

consensus_543#0      CAACGTGACCTTCTCACAGGGCTCATGGCTGCTCTTCCCTGCTGGCATGCCGTTGGATTA 475
consensus_543#1      NAAC-------------------------------------------------------- 412
                      ***                                                        

consensus_543#0      CCTCGTCTTCTTTCTCGGCTGCTCCTTCCCGAATCTCTTCCTCCCACCGGAAAACATCGA 535
consensus_543#1      ------------------------------------------------------------
                                                                                 

consensus_543#0      CCCGATCACCTGCAGCTTTATCGGTCTCAATGGACAGTCCTACGTGCTTCCGAAGGATCA 595
consensus_543#1      ------------------------------------------------------------
                                                                                 

consensus_543#0      AGTGCCGCCTGGGAGCTGGTCGCAGTTTTGCCAGAAAATCTACGAAGTTCCTGTGGTCAA 655
consensus_543#1      ------------------------------------------------------------
                                                                                 

consensus_543#0      ATATCAATCGATGGACCCAAAAGGTGACGCATGGAGGAAGGGTGGATACGGCCAGGTTCT 715
consensus_543#1      ------------------------------------------------------------
                                                                                 

consensus_543#0      TCGTCAGGGCTTCCCGTTGTCAGTGAACGATAGCAGGAGGCCCCCCAATTGTACGCAGTG 775
consensus_543#1      ------------------------------------------------------------
                                                                                 

consensus_543#0      CGAGGAAGTCAA 787
consensus_543#1      ------------