cluster # 549

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 549 cluster # 549 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_549#0 length = 965 sequences # 1

consensus_549#1 length = 939 sequences # 1

consensusID : consensus_549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 965
fasta sequence

                              [CCATCACCACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGAGAAGAAGGCGGCGCGGCCACGCCGCCGCCGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAG]

[+] EMBL AK069227             [CCATCACCACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGAGAAGAAGGCGGCGCGGCCACGCCGCCGCCGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAG]




>consensus_549#0
CCATCACCACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCC
GCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACC
CCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAG
GTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGG
GCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATG
GCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCGGTTCTCCGCAGCCGCCTCTGCCC
CTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATG
AGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGG
TGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGG
CGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCG
ACCAGTCGGCGTTCGCGCACTTCGAGGCCGAGAAGAAGGCGGCGCGGCCACGCCGCCGCC
GCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGG
GCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGA
ACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTT
ATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATC
CGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTC
ATAAG

consensusID : consensus_549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 939
fasta sequence

                              [ACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAGAGATTTGGATAAGGA]

[+] EMBL AK063099             [ACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTCGGCGTTCGCGCACTTCGAGGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCTCATAAGAGATTTGGATAAGGA]




>consensus_549#1
ACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCCGCCGCAAT
GCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACCCCCGCGGT
GCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAGGTCACCGC
CTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGGGCGGGTGG
TGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATGGCGCTCGA
CCGGCTCCGGTCGTTTAATCTCTCCGGCCGGTTCTCCGCAGCCGCCTCTGCCCCTGCTGC
TCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGATGAGGCGAC
GACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAGGTGGAGGA
TGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAGGCGACGGC
GGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGCGACCAGTC
GGCGTTCGCGCACTTCGAGGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGA
TTTCCAGCAATCCGAGGGGGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAA
TACAGGGAGAGGAGGAAGAACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCC
ATCTCTTCTGTTTTGGTTTATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGT
ATAATATTATCGTAGCATCCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATC
ATGTGAAAATTTCATCCTCATAAGAGATTTGGATAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_549#0      CCATCACCACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCC 60
consensus_549#1      --------ACCACCGCCGCTTCCTCCTCCGCCTCCGCCTCCACTCCACAACTCCGCCGCC 52
                             ****************************************************

consensus_549#0      GCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACC 120
consensus_549#1      GCCGCAATGCTGGAGGCCGTGATCCCGGCGGTGTGGAGCGCCGTCCACGGGTGGTTCACC 112
                     ************************************************************

consensus_549#0      CCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAG 180
consensus_549#1      CCCGCGGTGCTCTTCCTCGTCCTCAACATCGTCATCGGCACCATCGCGGTTACTTCCAAG 172
                     ************************************************************

consensus_549#0      GTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGG 240
consensus_549#1      GTCACCGCCTCCTCCTCGACGGCGGGCGGCGGCGGCGAGGGGGTTGGGTATGGAGCGTGG 232
                     ************************************************************

consensus_549#0      GCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATG 300
consensus_549#1      GCGGGTGGTGGTGGTGGTGGTGGAGGGGAGCAGAGGAGGTTCTCCCGCGTGCCGTCCATG 292
                     ************************************************************

consensus_549#0      GCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGC-GGTTCTCCGCAGCCGCCTCTGCC 359
consensus_549#1      GCGCTCGACCGGCTCCGGTCGTTTAATCTCTCCGGCCGGTTCTCCGCAGCCGCCTCTGCC 352
                     ************************************ ***********************

consensus_549#0      CCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGAT 419
consensus_549#1      CCTGCTGCTCCCGAGGCGGCCGCGGTGGTGGGCGGGGTGCTGGATCTGGGCGCCCGCGAT 412
                     ************************************************************

consensus_549#0      GAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAG 479
consensus_549#1      GAGGCGACGACGGCGGCGGTGGTGAAGGATGTGGGGGGCGGGAGAGAGCGCGAGGAGGAG 472
                     ************************************************************

consensus_549#0      GTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAG 539
consensus_549#1      GTGGAGGATGAGCAGGAGCGCGCGCAGGCGGCGCATGTGGTGGAGAGGAGCAAGTCGGAG 532
                     ************************************************************

consensus_549#0      GCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGC 599
consensus_549#1      GCGACGGCGGCGGCGGCGGACCTCCCGCGGCTGCCGGCGCGGCTGCGCAAGTCGGCCAGC 592
                     ************************************************************

consensus_549#0      GACCAGTCGGCGTTCGCGCACTTCGAGGCCGAGAAGAAGGCGGCGCGGCCACGCCGCCGC 659
consensus_549#1      GACCAGTCGGCGTTCGCGCACTTCGAGGC------------------------------- 621
                     *****************************                               

consensus_549#0      CGCCGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGG 719
consensus_549#1      ---CGCCGCCGCGGTGGGCAGCGACTTGTGAGACGCGTGTGATTTCCAGCAATCCGAGGG 678
                        *********************************************************

consensus_549#0      GGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAG 779
consensus_549#1      GGCTAGCCGCAAAACTGCTGATAAAAAAAAGAAGAAGAGAAATACAGGGAGAGGAGGAAG 738
                     ************************************************************

consensus_549#0      AACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTT 839
consensus_549#1      AACTCGAGAGAGAAAAAAATGGTAGTTTCTTTCTTTCTCCCCATCTCTTCTGTTTTGGTT 798
                     ************************************************************

consensus_549#0      TATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCAT 899
consensus_549#1      TATTTTCTTTTTTTTTCTCCTTTCAAAATGCTTAGTAGTAGTATAATATTATCGTAGCAT 858
                     ************************************************************

consensus_549#0      CCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCT 959
consensus_549#1      CCGACTTTTTGGATAGAATCTTGTGTAATGCAGCACCATATCATGTGAAAATTTCATCCT 918
                     ************************************************************

consensus_549#0      CATAAG--------------- 965
consensus_549#1      CATAAGAGATTTGGATAAGGA 939
                     ******