cluster # 551

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Oryza sativa
cluster # 551 cluster # 551 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_551#0 length = 754 sequences # 1

consensus_551#1 length = 163 sequences # 1

consensusID : consensus_551#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence

                              [CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG]

[+] EMBL CB630751             [CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG]




>consensus_551#0
CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAAC
AAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACC
TTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTC
ATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTG
GGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTC
TTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACT
GTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGC
CCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCC
CACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTC
AAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACC
AACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGA
AATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGG
CGTTAATTTGGCACTTAACAGTCGTCAACACCGG

consensusID : consensus_551#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence

                              [TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC]

[-] EMBL BI799967             [TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC]




>consensus_551#1
TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTA
ATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCT
TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_551#0      -CTTTTTTTTTTT-----AATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTA 54
consensus_551#1      TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTA 60
                       ***** *   *     ** ****** ********************************

consensus_551#0      ATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCT 114
consensus_551#1      ATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCT 120
                     ************************ ***********************************

consensus_551#0      TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATT 174
consensus_551#1      TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC----------------- 163
                     ************************************** ****                 

consensus_551#0      CAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTT 234
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTT 294
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      CTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGC 354
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      ACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGA 414
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGT 474
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTG 534
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      TAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTC 594
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      TCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATT 654
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTAT 714
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      TGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG 754
consensus_551#1      ----------------------------------------