cluster # 5517

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Oryza sativa
cluster # 5517 cluster # 5517 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5517#0 length = 879 sequences # 1

consensus_5517#1 length = 471 sequences # 2

consensusID : consensus_5517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 879
fasta sequence

                              [GCACCCGGCTTTTCTTTCCCAAAGGACTCTCTGCCAGATCTTTAGCAACAGAAATCACTCTTTTTCCAAGACACTCTTCGTTATTCCAACATGCAGATCAAGGCCCTCATCGTCGCCCTCTTCGCCGGCATCGCCATGGCTATGCCCACCGACCCGCCCAAGCACGGCGGCGGCGGCGGCACCACCCCTCCCCCACCGGCGGTGACGGCGGCAGCGGTGGTGGAAAGTACGACCCCTGCCAGGGCAGCGGAGCCTACAACAACGCCCAGTGCTGTGCCACTGACATCCTCGGTCTTGCCAACCTGGACTGCGCCCCTCCCCCGTCTCTTCCGACCTCGTCCAGCAGCTTCACCTCCATCTGCGCCGCGAAAGGTCAGCGTGCTCGCTGCTGTCTGCTCCCTGTTCTTGGACAGGCACTTCTCTGCCAGGCACCCATCGGCCATTAAACCAGCCGTCTGTACAACCAAGAGTATTATTCCGCTGCTGGATGACTCCTCGAAAAATTCAAGTCTTTTTCCACATTAGTCGAGGATATNGTTTGGGGGGACAAATTCCTTTGTTGAAGCACAGCTTCTGTTCTCCCCCAAGCTTTCATCCCCTTCCTTTCTCCTTTGGCTAATGGTTACCGAAAAGACGCTGTTNGACTTTTACGCACCTCACACTTATCGCAACCTCACACGGAAAACCGGTGGCGCCTCNTNCTTTTCANCGCTCCTTATGAAATGAATNAACACTGGTTTCTTCCATANTACCCCCGGCNCGTGGGGATTATNCTTTTGTTAAAGTNCAAAAGGGGGAACACTGCCAGTGGTTCNTTACTTGGGGACCTATAGGCCTTCTTACAAATCCACAAGCCGNTAACCCAAAAAAAAAAAAANA]

[+] EMBL AW155517             [GCACCCGGCTTTTCTTTCCCAAAGGACTCTCTGCCAGATCTTTAGCAACAGAAATCACTCTTTTTCCAAGACACTCTTCGTTATTCCAACATGCAGATCAAGGCCCTCATCGTCGCCCTCTTCGCCGGCATCGCCATGGCTATGCCCACCGACCCGCCCAAGCACGGCGGCGGCGGCGGCACCACCCCTCCCCCACCGGCGGTGACGGCGGCAGCGGTGGTGGAAAGTACGACCCCTGCCAGGGCAGCGGAGCCTACAACAACGCCCAGTGCTGTGCCACTGACATCCTCGGTCTTGCCAACCTGGACTGCGCCCCTCCCCCGTCTCTTCCGACCTCGTCCAGCAGCTTCACCTCCATCTGCGCCGCGAAAGGTCAGCGTGCTCGCTGCTGTCTGCTCCCTGTTCTTGGACAGGCACTTCTCTGCCAGGCACCCATCGGCCATTAAACCAGCCGTCTGTACAACCAAGAGTATTATTCCGCTGCTGGATGACTCCTCGAAAAATTCAAGTCTTTTTCCACATTAGTCGAGGATATNGTTTGGGGGGACAAATTCCTTTGTTGAAGCACAGCTTCTGTTCTCCCCCAAGCTTTCATCCCCTTCCTTTCTCCTTTGGCTAATGGTTACCGAAAAGACGCTGTTNGACTTTTACGCACCTCACACTTATCGCAACCTCACACGGAAAACCGGTGGCGCCTCNTNCTTTTCANCGCTCCTTATGAAATGAATNAACACTGGTTTCTTCCATANTACCCCCGGCNCGTGGGGATTATNCTTTTGTTAAAGTNCAAAAGGGGGAACACTGCCAGTGGTTCNTTACTTGGGGACCTATAGGCCTTCTTACAAATCCACAAGCCGNTAACCCAAAAAAAAAAAAANA]




>consensus_5517#0
GCACCCGGCTTTTCTTTCCCAAAGGACTCTCTGCCAGATCTTTAGCAACAGAAATCACTC
TTTTTCCAAGACACTCTTCGTTATTCCAACATGCAGATCAAGGCCCTCATCGTCGCCCTC
TTCGCCGGCATCGCCATGGCTATGCCCACCGACCCGCCCAAGCACGGCGGCGGCGGCGGC
ACCACCCCTCCCCCACCGGCGGTGACGGCGGCAGCGGTGGTGGAAAGTACGACCCCTGCC
AGGGCAGCGGAGCCTACAACAACGCCCAGTGCTGTGCCACTGACATCCTCGGTCTTGCCA
ACCTGGACTGCGCCCCTCCCCCGTCTCTTCCGACCTCGTCCAGCAGCTTCACCTCCATCT
GCGCCGCGAAAGGTCAGCGTGCTCGCTGCTGTCTGCTCCCTGTTCTTGGACAGGCACTTC
TCTGCCAGGCACCCATCGGCCATTAAACCAGCCGTCTGTACAACCAAGAGTATTATTCCG
CTGCTGGATGACTCCTCGAAAAATTCAAGTCTTTTTCCACATTAGTCGAGGATATNGTTT
GGGGGGACAAATTCCTTTGTTGAAGCACAGCTTCTGTTCTCCCCCAAGCTTTCATCCCCT
TCCTTTCTCCTTTGGCTAATGGTTACCGAAAAGACGCTGTTNGACTTTTACGCACCTCAC
ACTTATCGCAACCTCACACGGAAAACCGGTGGCGCCTCNTNCTTTTCANCGCTCCTTATG
AAATGAATNAACACTGGTTTCTTCCATANTACCCCCGGCNCGTGGGGATTATNCTTTTGT
TAAAGTNCAAAAGGGGGAACACTGCCAGTGGTTCNTTACTTGGGGACCTATAGGCCTTCT
TACAAATCCACAAGCCGNTAACCCAAAAAAAAAAAAANA

consensusID : consensus_5517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 471
fasta sequence

                              [NCCAATGANTNNANAGNCCAAGGNTAAAAAANNTNCCCCCNCAGTAAAGGGAGCAAAAAGATTGGNGCTCCCACCGNGGTGNCGGCCGCTNNAAAANNAGTGGTTCCNNCCGGGNTGCAGGAATTNGGCACGAGGTTGAAGCCCAGCTTC-TGTTNTCC-CCCAAGCTTTCAT-CCCCTTCCTTCTCCTTTGGCTAANTGTTACCNAAAGANGCTGTTTGACTTTTACGCACCTCACACTTATCGCAACCTCNCACGGGAAACCGGTTGGCCTCGGTTTCTTTTCACGCTCCTTATGATGATGATTTACACTGGTTTTCTTTCCTTATCCGCCGGGGTGNTGGGGATATATTTCTTTTGTTACAAGGTGCAAAATGGGGGNAACTGCGCAGTTGGATTTCTTATCATGGGGAGCTAGTTAGGTCCCTTTCTTACAGAAATACAAAGAACCCGTTTAACGAAAAAAAAAAAAAAA]

[+] EMBL AT003567             [NCCAATGANTNNANAGNCCAAGGNTAAAAAANNTNCCCCCNCAGTAAAGGGAGCAAAAAGATTGGNGCTCCCACCGNGGTGNCGGCCGCTNNAAAANNAGTGGTTCCNNCCGGGNTGCAGGAATTNGGCACGAGGTTGAAGCCCAGCTTC TGTTNTCC CCCAAGCTTTCAT CCCCTTCCTTCTCCTTTGGCTAANTGTTACCNAAAGANGCTGTTTGACTTTTACGCACCTCACACTTATCGCAACCTCNCACGGGAAACCGGTTGGCCTCGGTTTCTTTTCACGCTCCTTATGATGATGATTTACACTGGTTTTCTTTCCTTATCCGCCGGGGTGNTGGGGATATATTTCTTTTGTTACAAGGTGCAAAATGGGGGNAACTGCGCAGTTGGATTTCTTATCATGGGGAGCTAGTTAGGTCCCTTTCTTACAGAAATACAAAGAACCCGTTTAACGAAAAAAAAAAAAAAA]
[+] EMBL AT003570             [                                                                                                                                                AGCTTCTTGTTCTCCNANCNAGCTTTCATNNNCCTTCCTTCTCCTTTGGCTAATTGTTACCGAAAGACGCTGTTTNACTTTTACGCACCTNACACTTATCGCAACCTCACACGGGAAACCGGTTGGCCTCGGTTTCTTTTCACGCTCCTTATGATGATGATTTACACTGGTTTTCTTTCCTTATCCGCCGGGGTGCTGGGGATATATTTCTTTTGTTACAAGGTGCAAAATGGGGGAAACTGCGCAGTTGGATTTCTTATCATGGGGAGCTAGTTAGGTCCCTTTCTTACAGAAATACAAAGAACCCGTTTAACGAAAAAAAAAAAAAAA]




>consensus_5517#1
NCCAATGANTNNANAGNCCAAGGNTAAAAAANNTNCCCCCNCAGTAAAGGGAGCAAAAAG
ATTGGNGCTCCCACCGNGGTGNCGGCCGCTNNAAAANNAGTGGTTCCNNCCGGGNTGCAG
GAATTNGGCACGAGGTTGAAGCCCAGCTTCTGTTNTCCCCCAAGCTTTCATCCCCTTCCT
TCTCCTTTGGCTAANTGTTACCNAAAGANGCTGTTTGACTTTTACGCACCTCACACTTAT
CGCAACCTCNCACGGGAAACCGGTTGGCCTCGGTTTCTTTTCACGCTCCTTATGATGATG
ATTTACACTGGTTTTCTTTCCTTATCCGCCGGGGTGNTGGGGATATATTTCTTTTGTTAC
AAGGTGCAAAATGGGGGNAACTGCGCAGTTGGATTTCTTATCATGGGGAGCTAGTTAGGT
CCCTTTCTTACAGAAATACAAAGAACCCGTTTAACGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5517#0      GCACCCGGCTTTTCTTTCCCAAAGGACTCTCTGCCAGATCTTTAGCAACAGAAATCACTC 60
consensus_5517#1      ------------------------------------------------------------
                                                                                  

consensus_5517#0      TTTTTCCAAGACACTCTTCGTTATTCCAACATGCAGATCAAGGCCCTCATCGTCGCCCTC 120
consensus_5517#1      ------------------------------------------------------------
                                                                                  

consensus_5517#0      TTCGCCGGCATCGCCATGGCTATGCCCACCGACCCGCCCAAGCACGGCGGCGGCGGCGGC 180
consensus_5517#1      ------------------------------------------------------------
                                                                                  

consensus_5517#0      ACCACCCCTCCCCCACCGGCGGTGACGGCGGCAGCGGTGGTGGAAAGTACGACCCCTGCC 240
consensus_5517#1      ------------------------------------------------------------
                                                                                  

consensus_5517#0      AGGGCAGCGGAGCCTACAACAACGCCCAGTGCTGTGCCACTGACATCCTCGGTCTTGCCA 300
consensus_5517#1      ------------------------------------------------------------
                                                                                  

consensus_5517#0      ACCTGGACTGCGCCCCTCCCCCGTCTCTTCCGACCTCGTCCAGCAGCTTCACCTCCATCT 360
consensus_5517#1      ------------------------------------------------------------
                                                                                  

consensus_5517#0      GCGCCGCGAAAGGTCAGCGTGCTCGCTGCTGTCTGCTCCCTGTTCTTGGACAGGCACTTC 420
consensus_5517#1      -----------------------------------------------------------N 1
                                                                                  

consensus_5517#0      TCTGCCAGGCACCCATCGGCCATTAAACCAGCCGTCTGTACAACCAAGAGTATTATTCCG 480
consensus_5517#1      CCAATGANTNNANAGNCCAAGGNTAAAAAANNTNCCCCCNCAGTAAAGGGAGCAAAAAGA 61
                       *    *         *      ****  *     *    **   *** *    *     

consensus_5517#0      CTGCTGGATGACTCCTCGAAAAATTCAAGTCTTTTTCCACATTAGTCGAGGATATNGT-T 539
consensus_5517#1      TTGGNG------CTCCCACCGNGGTGNCGGCCGCTNNAAAANNAGTGGTTCCNNCCGGGN 115
                       **  *        * *       *   * *   *   * *  *** *        *   

consensus_5517#0      TGGGGGGACAAATTCCTTTGTTGAAGCACAGCTTCTGTTCTCCCCCAAGCTTTCATCCCC 599
consensus_5517#1      TGCAGGAATTNGGCACGAGGTTGAAGCCCAGCTTCTGTTNTCCCCCAAGCTTTCATCCCC 175
                      **  ** *       *   ******** *********** ********************

consensus_5517#0      TTCCTTTCTCCTTTGGCTAATGGTTACCGAAAAGACGCTGTTNGACTTTTACGCACCTCA 659
consensus_5517#1      TTCCTT-CTCCTTTGGCTAANTGTTACCNAAA-GANGCTGTTTGACTTTTACGCACCTCA 233
                      ****** *************  ****** *** ** ****** *****************

consensus_5517#0      CACTTATCGCAACCTCACACGGAAAACCGGTGGCGCCTCNTNCTTTTCANCGCTCCTTAT 719
consensus_5517#1      CACTTATCGCAACCTCNCACGGGAAACCGGTTGGCCTCGGTTTCTTTTCACGCTCCTTAT 293
                      **************** ***** ******** *  *    *   ***   **********

consensus_5517#0      GAAATGAATNAACACTGGTTT-CTTCCATANTACCCCCGGCNCGTGGGGAT-TATN-CTT 776
consensus_5517#1      GATGATGATTTACACTGGTTTTCTTTCCTTATCCGCCGGGGTGNTGGGGATATATTTCTT 353
                      **     **  ********** *** * *  * * ** **    ******* ***  ***

consensus_5517#0      TTGTTA--AAGTNCAAAAGGGGGAACACTGC-CAGT--GGTTCNTTACT-TGGGGACCTA 830
consensus_5517#1      TTGTTACAAGGTGCAAAATGGGGGNAACTGCGCAGTTGGATTTCTTATCATGGGGAGCTA 413
                      ******  * ** ***** ****   ***** ****  * **  ***   ****** ***

consensus_5517#0      --TAGGCC---TTCTTACAAATCCACAAG----CCGNTAACCCAAAAAAAAAAAAANA 879
consensus_5517#1      GTTAGGTCCCTTTCTTACAGAAATACAAAGAACCCGTTTAACGAAAAAAAAAAAAAAA 471
                        **** *   ******** *   ****     *** * * * ************* *