|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 877 fasta sequence
[TTCGCAAATCGACAAGAACATTCTCTTGCCCCCAAATCAATCACAATGGCGAAGCGCACAACCAAGGTCGGTATCACCGGCAAGTACGGTACTAGATATGGTGCCTCCCTGAGGAAGCAGGTCAAGCGTATGGAAATCAGCCAGCACGCCAGGTACACATGCACCTTCTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTGCGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTCTCGACCCCCGCCGCCGCTGCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACACGAGTCTCTNTTTCCTTTNTCAAACAATGATCGATCGACCAGGTCCCGGATTGTGAGCAATCGAGCCGGGTATCCGAAAGGGCGACGAAATGCATGGTCATGNGGGGACAGCANANAATCATGGATGGTGACNGGAGTTCTTGGACTGTCCTTCGCGTATTTAATGCAATTGATTGCNTNTTTCGCATGAAAANNNNANNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTNGGGGGGCCGTACAAATCCGCCATAAGGGGCGTATACGCCCCTATTGCCGCGTTTACACGCAGACTGAAAACCCTGGTACCACTAATCCTTGACAATCCCTTTTCCATGGTATAACGAAAGCCGCATACCCTTCACATTCACCTAAGGAGGGGCCCCTACGCTTAACCCGGGTGGGGTGGAGGACTAATTAACCAACCCCCTCTTTTTTTTTTTTTTTGTTCCCGNAAGGGGGTGGGTTTGTGCGCCCAACAAAAGGAGGAGGAGGGAGGAGGCTTGCGCGCTATTTGTTANACCANCATACTATT]
[+] EMBL AW155531 [TTCGCAAATCGACAAGAACATTCTCTTGCCCCCAAATCAATCACAATGGCGAAGCGCACAACCAAGGTCGGTATCACCGGCAAGTACGGTACTAGATATGGTGCCTCCCTGAGGAAGCAGGTCAAGCGTATGGAAATCAGCCAGCACGCCAGGTACACATGCACCTTCTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTGCGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTCTCGACCCCCGCCGCCGCTGCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACACGAGTCTCTNTTTCCTTTNTCAAACAATGATCGATCGACCAGGTCCCGGATTGTGAGCAATCGAGCCGGGTATCCGAAAGGGCGACGAAATGCATGGTCATGNGGGGACAGCANANAATCATGGATGGTGACNGGAGTTCTTGGACTGTCCTTCGCGTATTTAATGCAATTGATTGCNTNTTTCGCATGAAAANNNNANNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTNGGGGGGCCGTACAAATCCGCCATAAGGGGCGTATACGCCCCTATTGCCGCGTTTACACGCAGACTGAAAACCCTGGTACCACTAATCCTTGACAATCCCTTTTCCATGGTATAACGAAAGCCGCATACCCTTCACATTCACCTAAGGAGGGGCCCCTACGCTTAACCCGGGTGGGGTGGAGGACTAATTAACCAACCCCCTCTTTTTTTTTTTTTTTGTTCCCGNAAGGGGGTGGGTTTGTGCGCCCAACAAAAGGAGGAGGAGGGAGGAGGCTTGCGCGCTATTTGTTANACCANCATACTATT]
consensusID : consensus_5518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[TCCATTCNCCAATGGGCCAAGCGCCCCAACCCAAGGTCGGTATNACNGGCAAGTACGGTACTAGATATGGTGCCTCCCCTGAGGAAGCAGGTCNAGCGTATGNAAATCAGCCAGCACGCCCAGGTACACATGCACCTTNTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTACGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTNTCGACCCCCGCCGCCGCTNCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACNCGAGTCTCTTTGTTCCTTTTTCCAAACAATGATCGATCGACCAGGTCCCGGATTGTNAGCAATCGAGCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAAAAAAAAA]
[+] EMBL AT003365 [TCCATTCNCCAATGGGCCAAGCGCCCCAACCCAAGGTCGGTATNACNGGCAAGTACGGTACTAGATATGGTGCCTCCCCTGAGGAAGCAGGTCNAGCGTATGNAAATCAGCCAGCACGCCCAGGTACACATGCACCTTNTGCGGCAAGAACACCGTCAAGAGGCACTCGGTTGGCATCTGGAACTACGGTGCTTGCAAGAAGACCATCAGCGGAGGAGCCTACGTCGTNTCGACCCCCGCCGCCGCTNCCGCCAGGTCGACCCTCAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACNCGAGTCTCTTTGTTCCTTTTTCCAAACAATGATCGATCGACCAGGTCCCGGATTGTNAGCAATCGAGCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAAAAAAAAA]
consensusID : consensus_5518#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[ACCCCCNGTCAAANGCACTNGGGTTGGCATCTGGAAATGCGAGTGCTTGCNAGAANACCNTCAGCGGAGGAGCCTACAGTANTNTCNNGCCCCNCCGNCNCTACCGCCAGGNNNACCCTCNGGGGTNTGNGTGAGATNTCCNACGTTTTAATCTGNGNTTTTTCCCACGAGTNTCTNTGNTCCNTTTTTCCAACCANNNTNGNTTGGCCAGGTNCCGGATTGTGAGCAATCGANCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAA]
[+] EMBL AT003545 [ACCCCCNGTCAAANGCACTNGGGTTGGCATCTGGAAATGCGAGTGCTTGCNAGAANACCNTCAGCGGAGGAGCCTACAGTANTNTCNNGCCCCNCCGNCNCTACCGCCAGGNNNACCCTCNGGGGTNTGNGTGAGATNTCCNACGTTTTAATCTGNGNTTTTTCCCACGAGTNTCTNTGNTCCNTTTTTCCAACCANNNTNGNTTGGCCAGGTNCCGGATTGTGAGCAATCGANCGGGGTATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGTGACGGAAGTTTCTGGGACTGTCCTTCGGCGTTATTTAATGGCAAATGGAATGGCTTTTTCGGCATTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5518#0 TTCGCAAATCGACAAGAACATTCTCTTGCCCCCAAATCAATCACAATGGCGAAGCGCACA 60
consensus_5518#1 -------------------------------TCCATTCNCCAATG--GGCCAAGCGCCCC 27
consensus_5518#2 ------------------------------------------------------------
consensus_5518#0 A--CCAAGGTCGGTATCACCGGCAAGTACGGTACTAGATATGGTGCCTCCC-TGAGGAAG 117
consensus_5518#1 AACCCAAGGTCGGTATNACNGGCAAGTACGGTACTAGATATGGTGCCTCCCCTGAGGAAG 87
consensus_5518#2 ------------------------------------------------------------
consensus_5518#0 CAGGTCAAGCGTATGGAAATCAGCCAGCACGCC-AGGTACACATGCACCTTCTGCGGCAA 176
consensus_5518#1 CAGGTCNAGCGTATGNAAATCAGCCAGCACGCCCAGGTACACATGCACCTTNTGCGGCAA 147
consensus_5518#2 ------------------------------------------------------------
consensus_5518#0 GAACACCGTCAAGAGGCACTCGG-TTGGCATCTGGAACTGCG-GTGCTTGCAAGAAGACC 234
consensus_5518#1 GAACACCGTCAAGAGGCACTCGG-TTGGCATCTGGAACTACG-GTGCTTGCAAGAAGACC 205
consensus_5518#2 -ACCCCCNGTCAAANGCACTNGGGTTGGCATCTGGAAATGCGAGTGCTTGCNAGAANACC 59
* * ** * * ***** ** ************* * ** ******** **** ***
consensus_5518#0 ATCAGCGGAGGAGCCTAC-GTCGTCTCGACCCCCGCCGCCGCTGCCGCCAGGTCGACCCT 293
consensus_5518#1 ATCAGCGGAGGAGCCTAC-GTCGTNTCGACCCCCGCCGCCGCTNCCGCCAGGTCGACCCT 264
consensus_5518#2 NTCAGCGGAGGAGCCTACAGTANTNTCNNGCCCCNCCGNCNCTACCGCCAGGNNNACCCT 119
***************** ** * ** **** *** * ** ******** *****
consensus_5518#0 CAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACACGAGTCTCTNT- 352
consensus_5518#1 CAGGCGTCTGCGTGAGATCGCCGACGTTTAAATCAGCATTCTTCCACNCGAGTCTCTTTG 324
consensus_5518#2 CNGGGGTNTGNGTGAGATNTCCNACGTTTTAATCTGNGNTTTTTCCCACGAGTNTCTNTG 179
* ** ** ** ******* ** ****** **** * * ** * * ***** *** *
consensus_5518#0 -TTCCTTTNTCAAACAATGATCGATCGACCAGGTCCCGGATTGTGAGCAATCGAGCCGGG 411
consensus_5518#1 TTCCTTTTTCCAAACAATGATCGATCGACCAGGTCCCGGATTGTNAGCAATCGAGCGGGG 384
consensus_5518#2 NTCCNTTTTTCCAACCANNNTNGNTTGGCCAGGTNCCGGATTGTGAGCAATCGANCGGGG 239
* * *** * *** * * * * * ****** ********* ********* * ***
consensus_5518#0 TATCCGAAAGGGCGACGAAATGCATGGT-CATGNGGGGACAGCANANAATCATGGATGGT 470
consensus_5518#1 TATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGT 444
consensus_5518#2 TATCCGAAAGGGCGACGAATGCAATGGTTCATGGGGGGACAGCAAAAAATCATGGATGGT 299
******************* ***** **** ********** * *************
consensus_5518#0 GACNGGAGTTCTTGG-ACTGTCCTTCGCGTATTTAATGCAATTGATTGCNTNTTTCGCAT 529
consensus_5518#1 GACGGAAGTTTCTGGGACTGTCCTTCG--------------------GCGTTATTTA-AT 483
consensus_5518#2 GACGGAAGTTTCTGGGACTGTCCTTCG--------------------GCGTTATTTA-AT 338
*** * **** *** *********** ** * ** **
consensus_5518#0 GAAAANNNNANNNNNNNNNNNNNNNNNNNNNNNNNNAAATCTNGGGGGGCCGTACAAATC 589
consensus_5518#1 GGCAAATGGAATGGCTTTTTCGGCATTGAAAAAAAAA----------------------- 520
consensus_5518#2 GGCAAATGGAATGGCTTTTTCGGCATTGAA------------------------------ 368
* ** *
consensus_5518#0 CGCCATAAGGGGCGTATACGCCCCTATTGCCGCGTTTACACGCAGACTGAAAACCCTGGT 649
consensus_5518#1 ------------------------------------------------------------
consensus_5518#2 ------------------------------------------------------------
consensus_5518#0 ACCACTAATCCTTGACAATCCCTTTTCCATGGTATAACGAAAGCCGCATACCCTTCACAT 709
consensus_5518#1 ------------------------------------------------------------
consensus_5518#2 ------------------------------------------------------------
consensus_5518#0 TCACCTAAGGAGGGGCCCCTACGCTTAACCCGGGTGGGGTGGAGGACTAATTAACCAACC 769
consensus_5518#1 ------------------------------------------------------------
consensus_5518#2 ------------------------------------------------------------
consensus_5518#0 CCCTCTTTTTTTTTTTTTTTGTTCCCGNAAGGGGGTGGGTTTGTGCGCCCAACAAAAGGA 829
consensus_5518#1 ------------------------------------------------------------
consensus_5518#2 ------------------------------------------------------------
consensus_5518#0 GGAGGAGGGAGGAGGCTTGCGCGCTATTTGTTANACCANCATACTATT 877
consensus_5518#1 ------------------------------------------------
consensus_5518#2 ------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||