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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1337 fasta sequence
[TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCGCCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT]
[+] EMBL AK063707 [TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCGCCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT]
[-] EMBL CB619325 [ AATCNCTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGACTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGAAAGGCCGGATTGTATTGATCATGG ]
consensusID : consensus_5533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCTTAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTTGTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA]
[+] EMBL CB619324 [ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGCCGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCCCCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCGTCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGGGCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCTTAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTTGTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5533#0 TCTGGACCACCGATTTCCAATCCAACGAACACTCTCGCTGCCGCGGCCGCCGCCTCCTCG 60
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 CCCCATCCAGCACTCCACGCCCCTCGAATCCATCCGCCGCCGCCGCGATGCCGCCTCCGC 120
consensus_5533#1 ---------------------------ATCCATCCGCCGCCGCCGCGATGCCGCCTCCGC 33
*********************************
consensus_5533#0 CGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCC 180
consensus_5533#1 CGCACGCCGCTTTCCTCCTCCGGTCCCGGGGTCTACTGCCTCCTCTCCTCCGACGAAGCC 93
************************************************************
consensus_5533#0 CCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCG 240
consensus_5533#1 CCAGCTCCGGCCCGCCGCCTCCGCTCCTCCGCCCGACCAGGCAGCGCCGCGGCCTCTCCG 153
************************************************************
consensus_5533#0 TCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGG 300
consensus_5533#1 TCCGCGCCTCCGCTGCGGAGCTCGCCGCCGGAGTTGCAGGGGTGGAGGATGCGGTGGTGG 213
************************************************************
consensus_5533#0 GCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTG 360
consensus_5533#1 GCTTCGTCACCGGCAAGCGGAAGGCCACCGAGTTAGCCCACGCGGTGTGGAGAAGTATTG 273
************************************************************
consensus_5533#0 TTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTA 420
consensus_5533#1 TTCGGAAAGGGGATACTGTGGTTGATGCCACATGCGGGAACGGCAATGATACATTCGCTA 333
************************************************************
consensus_5533#0 TGCTTAAA-TGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGG 479
consensus_5533#1 TGCTTAAAATGGTAGCTGATGAAAGAGTACAAGGGCGTGTATATGGGTTGGACATTCAGG 393
******** ***************************************************
consensus_5533#0 AGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAG---- 535
consensus_5533#1 AGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGATCT 453
********************************************************
consensus_5533#0 ------------------------------------------------------------
consensus_5533#1 TAGTATATAGAAACAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGTT 513
consensus_5533#0 --------------------------CTCGAACTTGTCAAGTTGTTTACAATCTGTCACA 569
consensus_5533#1 GTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACA 573
**********************************
consensus_5533#0 GTAGAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGG 629
consensus_5533#1 GTAGAATGGAGGAGGTCGTTCCAAAAGATTTCCCTGTCAGGCTTGTAGCATTCAACTTGG 633
******************* ****************************************
consensus_5533#0 GCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTT 689
consensus_5533#1 GCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTT 693
************************************************************
consensus_5533#0 TGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTG 749
consensus_5533#1 TGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTG 753
************************************************************
consensus_5533#0 GACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTA 809
consensus_5533#1 GACATCCAGGTGGAAGGGATGAACTTGATGTTGTTGA----------------------- 790
*************************************
consensus_5533#0 TTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCA 869
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 TTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTT 929
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 AGTGAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATT 989
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 TGAAGTTACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAAC 1049
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 AACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATAT 1109
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 GTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTAC 1169
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 TCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGA 1229
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 CATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCATACCCTACTC 1289
consensus_5533#1 ------------------------------------------------------------
consensus_5533#0 TTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTT 1337
consensus_5533#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||