cluster # 5560

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Oryza sativa
cluster # 5560 cluster # 5560 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5560#0 length = 2718 sequences # 2

consensus_5560#1 length = 620 sequences # 1

consensusID : consensus_5560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2718
fasta sequence

                              [AGCCGGCGCGGCGACCAGTCGTCGCCGCCGGCCCCCTTTCCTCTCCGGCGCAGGCGAGGGGGGAGCAGATCGGGTAGGCGGAAAGCTGTCGTCATTCCCCCGCCGCATCGCGGCGAACGGCGCGGGCGTGGCAGCCTTGGGGTTCGCGGGACGACGCGCCCCCGACGCGCGCCTGCTTTGAGATTGATGCCACTCGTGGGCTCGTGGCTCGACTGCATCGGTGGTGCCTGCGCACACGGCGCACCCCGTGAAGGCTTCGCGCCTTCGATCCGCTGCTGAGTTTGAAGAATTCTGAAGCAGCTTCAATAGCACCATCCATGACTGATTGACTGATCCCATGACTTATAACCTGCAAAATGGCAGAATTAGTAGAGACTTGGGTGCACAAGTAAGCTTTCTTTGTTCCCTTACTGCCTGCTAGTTAGTGATGATGTAGGAAAAGAATGCTTTGGTACTTATCTTATGAAGTAGCAACTTAATCAGGAAAAATAGCATTTGAATGGTCCTTCTCTATATGCACAAATTGCACTTTTATATACATGGTCCGTTCTTGTCATTACTGAAAGGTTTATAAAACACCCCAGTGATAGTGCTGGCAGCCTTGATATGTCCACATGGACGGAAAAAGAAAAAAAAATTGCAGTGGTTTAGAACCCAAAGCTAAAATATCGATTAGGTGTAGAGTCAGTTTCAGACTTGTGAACTTGAAATGTTAACCAATCTTGTAAAAAGTAGATGATCATATAGAGGTTTTACATATGTCTTTTTTAACCTAGAAAGAGATACTTTGGCATATCTTTTCAAATTTTGTGAATACTAATTTACAGTTCATCATTGAAATATTTATTGTTACAAAGAACTAAGGTCTCAATTCAAAGTATCAAGTCATTCATTGCATTGCAATGATACGGTACTTTGCATATGTCATGTATTTGTGTACCTTCGGTTTGGCAAGCTAATCAAGTCTAGCATGCTCACAGCACAAGGTTTGCTTCCGCTTCATCATTTGTGGGTTTCCACATAACAAACTGATAAAGTTTAGTTGTTTTTTTTCCTTATCTAGTTTTTCCCATTTTCATGAAAGAGCTGTTTAGCCCATACATAGAGTTGGTGCAGTGAATTGTACTATATGTACAGTTTTCCTAGACTTGCACAGATCAAACTCTCCATTTTGGTGGGAGCAAAAATAGGATGCAGCTCATCAAACATGTAGTTCAGTAGATACAGACTGCCCATATCACCACTTCCAGAAAAAGGAGGCGCATACCATATTCTTCACCGTTAGCGAACAATATTATGCTGCCATTGCTACCTGCAGGATTTCAAAGAAGGGTCCCGATCTGATAGCTCCTAGGGTTCAATTACTTGCTCTTTGATTTGGAGTTTTCTGCCAGATAGAAATGTGGCTGGGACACAAGGATAAGCTTCCTTGGTTGACTACCCCATACCATTCTAGCACATGTCAAAATGGCGTCAACGTAAACTGTCTTCAGTGTTTGGACATAGGAAAAGA-CAAGTCTAGAGAGTAAGAACATGACAAAAAGGCTGTGTCACTACGTTGCGTTAAAGGAAATTTACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATATCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATCACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTCGACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGCTGCAGGTTGGTGCAAAAAAAAACCGCCGTTCTTCTCTGTTGTCTGTGCAGAAGCAGAACGCATACATGTGCATAATACACCTGATGGATCCTCCTCACCTGGACAGGGGGCTCCAAAGGAGAAGTCAAGTTAGGCGACGCATTTCCATCCATTCATGCACTTTGCAGCGTCTCGAAATGGACTACATGGATCCTGTATCTGGTCCAGGAGAGGAGAAGCCGCTGGGCATAGGCAGCGTACCTACCTACGTACGCTGGGAGCGCGTGGTGTGCGATGTTGCACCGCATCTGCATCATGCACAAGTAGCAATACTATATGAATCTTGAGTATGATGATGAATTGATGATGCTGAGCTACAGGCCAAGCTGCGCGACGCGTGCAACTGGGCGCTGGATTTTCTTAAGACCCAAGGAAATTAAGACGAGCAAGCGGATAATATTTGTGGGGAGGCAAGTTGGTTTGATTTGGCCATACATACTGTGTTTTTTGGCTGTCCAGGAGGGGCTCCCCCCGGGTCATGAAACCTGAACCGCTCGAAGGTTTCGGCACTTAAATGTCGCAGTGGCAGCATCCCAAAAAAGGCCGTTTTTGGCAGCTCTCGTAGGTCTGCAATTGTGAAAATTCTGTGGACAGCCACCCAGGTTTCGGTTTTGTCTCCTGTCTAGTCTTGGTGGTATCGCGGTGCAGCTGTTCCTGCAAAAGAGATGGACGGTCAGGATCAAGCGTGGACTTCTCCGTTTTTGTTCTCTCTGTGTGCGTTTGTTCCTTTTCTGCCTACGTGTTTGTATGTTTCGTTGTTTAGTTGTTTAGTTTGGTTCTCTGCTAGAGCAGTGTGATGAGATATGAAATCCTTGTGTAGAAGTCTAGAAGATACTGGAGTACCCTCTCCGTCCCACAATATAAGAGATTTTGAGTTTTTGATTGCAACGTTTGAT]

[+] EMBL AK073700             [AGCCGGCGCGGCGACCAGTCGTCGCCGCCGGCCCCCTTTCCTCTCCGGCGCAGGCGAGGGGGGAGCAGATCGGGTAGGCGGAAAGCTGTCGTCATTCCCCCGCCGCATCGCGGCGAACGGCGCGGGCGTGGCAGCCTTGGGGTTCGCGGGACGACGCGCCCCCGACGCGCGCCTGCTTTGAGATTGATGCCACTCGTGGGCTCGTGGCTCGACTGCATCGGTGGTGCCTGCGCACACGGCGCACCCCGTGAAGGCTTCGCGCCTTCGATCCGCTGCTGAGTTTGAAGAATTCTGAAGCAGCTTCAATAGCACCATCCATGACTGATTGACTGATCCCATGACTTATAACCTGCAAAATGGCAGAATTAGTAGAGACTTGGGTGCACAAGTAAGCTTTCTTTGTTCCCTTACTGCCTGCTAGTTAGTGATGATGTAGGAAAAGAATGCTTTGGTACTTATCTTATGAAGTAGCAACTTAATCAGGAAAAATAGCATTTGAATGGTCCTTCTCTATATGCACAAATTGCACTTTTATATACATGGTCCGTTCTTGTCATTACTGAAAGGTTTATAAAACACCCCAGTGATAGTGCTGGCAGCCTTGATATGTCCACATGGACGGAAAAAGAAAAAAAAATTGCAGTGGTTTAGAACCCAAAGCTAAAATATCGATTAGGTGTAGAGTCAGTTTCAGACTTGTGAACTTGAAATGTTAACCAATCTTGTAAAAAGTAGATGATCATATAGAGGTTTTACATATGTCTTTTTTAACCTAGAAAGAGATACTTTGGCATATCTTTTCAAATTTTGTGAATACTAATTTACAGTTCATCATTGAAATATTTATTGTTACAAAGAACTAAGGTCTCAATTCAAAGTATCAAGTCATTCATTGCATTGCAATGATACGGTACTTTGCATATGTCATGTATTTGTGTACCTTCGGTTTGGCAAGCTAATCAAGTCTAGCATGCTCACAGCACAAGGTTTGCTTCCGCTTCATCATTTGTGGGTTTCCACATAACAAACTGATAAAGTTTAGTTGTTTTTTTTCCTTATCTAGTTTTTCCCATTTTCATGAAAGAGCTGTTTAGCCCATACATAGAGTTGGTGCAGTGAATTGTACTATATGTACAGTTTTCCTAGACTTGCACAGATCAAACTCTCCATTTTGGTGGGAGCAAAAATAGGATGCAGCTCATCAAACATGTAGTTCAGTAGATACAGACTGCCCATATCACCACTTCCAGAAAAAGGAGGCGCATACCATATTCTTCACCGTTAGCGAACAATATTATGCTGCCATTGCTACCTGCAGGATTTCAAAGAAGGGTCCCGATCTGATAGCTCCTAGGGTTCAATTACTTGCTCTTTGATTTGGAGTTTTCTGCCAGATAGAAATGTGGCTGGGACACAAGGATAAGCTTCCTTGGTTGACTACCCCATACCATTCTAGCACATGTCAAAATGGCGTCAACGTAAACTGTCTTCAGTGTTTGGACATAGGAAAAGA CAAGTCTAGAGAGTAAGAACATGACAAAAAGGCTGTGTCACTACGTTGCGTTAAAGGAAATTTACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATATCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATCACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTCGACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGCTGCAGGTTGGTGCAAAAAAAAACCGCCGTTCTTCTCTGTTGTCTGTGCAGAAGCAGAACGCATACATGTGCATAATACACCTGATGGATCCTCCTCACCTGGACAGGGGGCTCCAAAGGAGAAGTCAAGTTAGGCGACGCATTTCCATCCATTCATGCACTTTGCAGCGTCTCGAAATGGACTACATGGATCCTGTATCTGGTCCAGGAGAGGAGAAGCCGCTGGGCATAGGCAGCGTACCTACCTACGTACGCTGGGAGCGCGTGGTGTGCGATGTTGCACCGCATCTGCATCATGCACAAGTAGCAATACTATATGAATCTTGAGTATGATGATGAATTGATGATGCTGAGCTACAGGCCAAGCTGCGCGACGCGTGCAACTGGGCGCTGGATTTTCTTAAGACCCAAGGAAATTAAGACGAGCAAGCGGATAATATTTGTGGGGAGGCAAGTTGGTTTGATTTGGCCATACATACTGTGTTTTTTGGCTGTCCAGGAGGGGCTCCCCCCGGGTCATGAAACCTGAACCGCTCGAAGGTTTCGGCACTTAAATGTCGCAGTGGCAGCATCCCAAAAAAGGCCGTTTTTGGCAGCTCTCGTAGGTCTGCAATTGTGAAAATTCTGTGGACAGCCACCCAGGTTTCGGTTTTGTCTCCTGTCTAGTCTTGGTGGTATCGCGGTGCAGCTGTTCCTGCAAAAGAGATGGACGGTCAGGATCAAGCGTGGACTTCTCCGTTTTTGTTCTCTCTGTGTGCGTTTGTTCCTTTTCTGCCTACGTGTTTGTATGTTTCGTTGTTTAGTTGTTTAGTTTGGTTCTCTGCTAGAGCAGTGTGATGAGATATGAAATCCTTGTGTAGAAGTCTAGAAGATACTGGAGTACCCTCTCCGTCCCACAATATAAGAGATTTTGAGT                    ]
[+] EMBL AK098957             [                        CCGCCGGCCCCCTTTCCTCTCCGGCGCAGGCGAGGGGGGAGCAGATCGGGTAGGCGGAAAGCTGTCGTCATTCCCCCGCCGCATCGCGGCGAACGGCGCGGGCGTGGCAGCCTTGGGGTTCGCGGGACGACGCGCCCCCGACGCGCGCCTGCTTTGAGATTGATGCCACTCGTGGGCTCGTGGCTCGACTGCATCGGTGGTGCCTGCGCACACGGCGCACCCCGTGAAGGCTTCGCGCCTTCGATCCGCTGCTGAGTTTGAAGAATTCTGAAGCAGCTTCAATAGCACCATCCATGACTGATTGACTGATCCCATGACTTATAACCTGCAAAATGGCAGAATTAGTAGAGACTTGGGTGCACAAGTAAGCTTTCTTTGTTCCCTTACTGCCTGCTAGTTAGTGATGATGTAGGAAAAGAATGCTTTGGTACTTATCTTATGAAGTAGCAACTTAATCAGGAAAAATAGCATTTGAATGGTCCTTCTCTATATGCACAAATTGCACTTTTATATACATGGTCCGTTCTTGTCATTACTGAAAGGTTTATAAAACACCCCAGTGATAGTGCTGGCAGCCTTGATATGTCCACATGGACGGAAAAAGAAAAAAAAATTGCAGTGGTTTAGAACCCAAAGCTAAAATATCGATTAGGTGTAGAGTCAGTTTCAGACTTGTGAACTTGAAATGTTAACCAATCTTGTAAAAAGTAGATGATCATATAGAGGTTTTACATATGTCTTTTTTAACCTAGAAAGAGATACTTTGGCATATCTTTTCAAATTTTGTGAATACTAATTTACAGTTCATCATTGAAATATTTATTGTTACAAAGAACTAAGGTCTCAATTCAAAGTATCAAGTCATTCATTGCATTGCAATGATACGGTACTTTGCATATGTCATGTATTTGTGTACCTTCGGTTTGGCAAGCTAATCAAGTCTAGCATGCTCACAGCACAAGGTTTGCTTCCGCTTCATCATTTGTGGGTTTCCACATAACAAACTGATAAAGTTTAGTTGTTTTTTTTCCTTATCTAGTTTTTCCCATTTTCATGAAAGAGCTGTTTAGCCCATACATAGAGTTGGTGCAGTGAATTGTACTATATGTACAGTTTTCCTAGACTTGCACAGATCAAACTCTCCATTTTGGTGGGAGCAAAAATAGGATGCAGCTCATCAAACATGTAGTTCAGTAGATACAGACTGCCCATATCACCACTTCCAGAAAAAGGAGGCGCATACCATATTCTTCACCGTTAGCGAACAATATTATGCTGCCATTGCTACCTGCAGGATTTCAAAGAAGGGTCCCGATCTGATAGCTCCTAGGGTTCAATTACTTGCTCTTTGATTTGGAGTTTTCTGCCAGATAGAAATGTGGCTGGGACACAAGGATAAGCTTCCTTGGTTGACTACCCCATACCATTCTAGCACATGTCAAAATGGCGTCAACGTAAACTGTCTTCAGTGTTTGGACATAGGAAAAGACCAAGTCTAGAGAGTAAGAACATGACAAAAAGGCTGTGTCACTACGTTGCGTTAAAGGAAATTTACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATATCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATCACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTCGACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGCTGCAGGTTGGTGCAAAAAAAAACCGCCGTTCTTCTCTGTTGTCTGTGCGGAAGCAGAACGCATACATGTGCATAATACACCTGATGGATCCTCCTCACCTGGACAGGGGGCTCCAAAGGAGAAGTCAAGTTAGGCGACGCATTTCCATCCATTCATGCACTTTGCAGCGTCTCGAGATGGACTACATGGATCCTGTATCTGGTCCAGGAGAGGAGAAGCCGCTGGGCATAGGCAGCGTACCTACCTACGTACGCTGGGAGCGCGTGGTGTGCGATGTTGCACCGCATCTGCATCATGCACAAGTAGCAATACTATATGAATCTTGAGTATGATGATGAATTGATGATGCTGAGCTACAGGCCAAGCTGCGCGACGCGTGCAACTGGGCGCTGGATTTTCTTAAGACCCAAGGAAATTAAGACGAGCAAGCGGATAATATTTGTGGGGAGGCAAGTTGGTTTGATTTGGCCATACATACTGTGTTTTTTGGCTGTCCAGGAGGGGCTCCCCCCGGGTCATGAAACCTAAACCGCTCGAAGGTTTCGGCACTTAAATGTCGCAGTGGCAGCATCCCAAAAAAGGCCGTTTTTGGCAGCTCTCGTAGGTCTGCAATTGTGAAAATTCTGTGGACAGCCACCCAGGTTTCGGTTTTGTCTCCTGTCTAGTCTTGGTGGTATCGCGGTGCAGCTGTTCCTGCAAAAGAGATGGACGGTCAGGATCAAGCGTGGACTTCTCCGTTTTTGTTCTCTCTGTGTGCGTTTGTTCCTTTTCTGCCTACGTGTTTGTATGTTTCGTTGTTTAGTTGTTTAGTTTGGTTCTCTGCTAGAGCAGTGTGATGAGATATGAAATCCTTGTGTAGAAGTCTAGAAGATACTGGAGTACCCTCTCCGTCCCACAATATAAGAGATTTTGAGTTTTTGATTGCAACGTTTGAT]




>consensus_5560#0
AGCCGGCGCGGCGACCAGTCGTCGCCGCCGGCCCCCTTTCCTCTCCGGCGCAGGCGAGGG
GGGAGCAGATCGGGTAGGCGGAAAGCTGTCGTCATTCCCCCGCCGCATCGCGGCGAACGG
CGCGGGCGTGGCAGCCTTGGGGTTCGCGGGACGACGCGCCCCCGACGCGCGCCTGCTTTG
AGATTGATGCCACTCGTGGGCTCGTGGCTCGACTGCATCGGTGGTGCCTGCGCACACGGC
GCACCCCGTGAAGGCTTCGCGCCTTCGATCCGCTGCTGAGTTTGAAGAATTCTGAAGCAG
CTTCAATAGCACCATCCATGACTGATTGACTGATCCCATGACTTATAACCTGCAAAATGG
CAGAATTAGTAGAGACTTGGGTGCACAAGTAAGCTTTCTTTGTTCCCTTACTGCCTGCTA
GTTAGTGATGATGTAGGAAAAGAATGCTTTGGTACTTATCTTATGAAGTAGCAACTTAAT
CAGGAAAAATAGCATTTGAATGGTCCTTCTCTATATGCACAAATTGCACTTTTATATACA
TGGTCCGTTCTTGTCATTACTGAAAGGTTTATAAAACACCCCAGTGATAGTGCTGGCAGC
CTTGATATGTCCACATGGACGGAAAAAGAAAAAAAAATTGCAGTGGTTTAGAACCCAAAG
CTAAAATATCGATTAGGTGTAGAGTCAGTTTCAGACTTGTGAACTTGAAATGTTAACCAA
TCTTGTAAAAAGTAGATGATCATATAGAGGTTTTACATATGTCTTTTTTAACCTAGAAAG
AGATACTTTGGCATATCTTTTCAAATTTTGTGAATACTAATTTACAGTTCATCATTGAAA
TATTTATTGTTACAAAGAACTAAGGTCTCAATTCAAAGTATCAAGTCATTCATTGCATTG
CAATGATACGGTACTTTGCATATGTCATGTATTTGTGTACCTTCGGTTTGGCAAGCTAAT
CAAGTCTAGCATGCTCACAGCACAAGGTTTGCTTCCGCTTCATCATTTGTGGGTTTCCAC
ATAACAAACTGATAAAGTTTAGTTGTTTTTTTTCCTTATCTAGTTTTTCCCATTTTCATG
AAAGAGCTGTTTAGCCCATACATAGAGTTGGTGCAGTGAATTGTACTATATGTACAGTTT
TCCTAGACTTGCACAGATCAAACTCTCCATTTTGGTGGGAGCAAAAATAGGATGCAGCTC
ATCAAACATGTAGTTCAGTAGATACAGACTGCCCATATCACCACTTCCAGAAAAAGGAGG
CGCATACCATATTCTTCACCGTTAGCGAACAATATTATGCTGCCATTGCTACCTGCAGGA
TTTCAAAGAAGGGTCCCGATCTGATAGCTCCTAGGGTTCAATTACTTGCTCTTTGATTTG
GAGTTTTCTGCCAGATAGAAATGTGGCTGGGACACAAGGATAAGCTTCCTTGGTTGACTA
CCCCATACCATTCTAGCACATGTCAAAATGGCGTCAACGTAAACTGTCTTCAGTGTTTGG
ACATAGGAAAAGACAAGTCTAGAGAGTAAGAACATGACAAAAAGGCTGTGTCACTACGTT
GCGTTAAAGGAAATTTACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATATCGTT
GACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATCACTGG
CATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTCGACGT
GTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGCTGCAGGTTGGTGCAAAA
AAAAACCGCCGTTCTTCTCTGTTGTCTGTGCAGAAGCAGAACGCATACATGTGCATAATA
CACCTGATGGATCCTCCTCACCTGGACAGGGGGCTCCAAAGGAGAAGTCAAGTTAGGCGA
CGCATTTCCATCCATTCATGCACTTTGCAGCGTCTCGAAATGGACTACATGGATCCTGTA
TCTGGTCCAGGAGAGGAGAAGCCGCTGGGCATAGGCAGCGTACCTACCTACGTACGCTGG
GAGCGCGTGGTGTGCGATGTTGCACCGCATCTGCATCATGCACAAGTAGCAATACTATAT
GAATCTTGAGTATGATGATGAATTGATGATGCTGAGCTACAGGCCAAGCTGCGCGACGCG
TGCAACTGGGCGCTGGATTTTCTTAAGACCCAAGGAAATTAAGACGAGCAAGCGGATAAT
ATTTGTGGGGAGGCAAGTTGGTTTGATTTGGCCATACATACTGTGTTTTTTGGCTGTCCA
GGAGGGGCTCCCCCCGGGTCATGAAACCTGAACCGCTCGAAGGTTTCGGCACTTAAATGT
CGCAGTGGCAGCATCCCAAAAAAGGCCGTTTTTGGCAGCTCTCGTAGGTCTGCAATTGTG
AAAATTCTGTGGACAGCCACCCAGGTTTCGGTTTTGTCTCCTGTCTAGTCTTGGTGGTAT
CGCGGTGCAGCTGTTCCTGCAAAAGAGATGGACGGTCAGGATCAAGCGTGGACTTCTCCG
TTTTTGTTCTCTCTGTGTGCGTTTGTTCCTTTTCTGCCTACGTGTTTGTATGTTTCGTTG
TTTAGTTGTTTAGTTTGGTTCTCTGCTAGAGCAGTGTGATGAGATATGAAATCCTTGTGT
AGAAGTCTAGAAGATACTGGAGTACCCTCTCCGTCCCACAATATAAGAGATTTTGAGTTT
TTGATTGCAACGTTTGAT

consensusID : consensus_5560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [AGGGTAGCAATTCACTGACAATAGCTGTAAGCCTTCCTCAAATTTCTCTTGCATGTATTCCTTGCCAATGCCTAGGCCTTCTAGAATTGCTTCCATCAGTTTCAGAGCCACCACCCTTACTTCTACGGCATATTTTGCCATGTATTCCCTATATATTGGTGGTTGCTGTGGCCAGTATTGCAGCCAATCGCAGAGGGGATGGGCATAATGCTTCAGGAATGCCCGAGACATACTAATGCCATCCTTTGAGCTGGTATCGTATCTAACAGGTTGCCGGATATCATCTGATGCATACTCTTTCTTTATCTCATTTGGCAGTTTGAAGAATTCTGAAGCAGCTTCAATAGCACCATCCATGACTGATTGACTGATCCCATGACTTATAACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATATCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATCACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTCGACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGGTACGCCAATTGGTTATGCAGAATTAGAA]

[-] EMBL CF322363             [AGGGTAGCAATTCACTGACAATAGCTGTAAGCCTTCCTCAAATTTCTCTTGCATGTATTCCTTGCCAATGCCTAGGCCTTCTAGAATTGCTTCCATCAGTTTCAGAGCCACCACCCTTACTTCTACGGCATATTTTGCCATGTATTCCCTATATATTGGTGGTTGCTGTGGCCAGTATTGCAGCCAATCGCAGAGGGGATGGGCATAATGCTTCAGGAATGCCCGAGACATACTAATGCCATCCTTTGAGCTGGTATCGTATCTAACAGGTTGCCGGATATCATCTGATGCATACTCTTTCTTTATCTCATTTGGCAGTTTGAAGAATTCTGAAGCAGCTTCAATAGCACCATCCATGACTGATTGACTGATCCCATGACTTATAACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATATCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATCACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTCGACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGGTACGCCAATTGGTTATGCAGAATTAGAA]




>consensus_5560#1
AGGGTAGCAATTCACTGACAATAGCTGTAAGCCTTCCTCAAATTTCTCTTGCATGTATTC
CTTGCCAATGCCTAGGCCTTCTAGAATTGCTTCCATCAGTTTCAGAGCCACCACCCTTAC
TTCTACGGCATATTTTGCCATGTATTCCCTATATATTGGTGGTTGCTGTGGCCAGTATTG
CAGCCAATCGCAGAGGGGATGGGCATAATGCTTCAGGAATGCCCGAGACATACTAATGCC
ATCCTTTGAGCTGGTATCGTATCTAACAGGTTGCCGGATATCATCTGATGCATACTCTTT
CTTTATCTCATTTGGCAGTTTGAAGAATTCTGAAGCAGCTTCAATAGCACCATCCATGAC
TGATTGACTGATCCCATGACTTATAACCTGGAAGTATCCCAGATCACGGCATGCTTTGGC
GATATCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTT
GATCACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACC
CTTCGACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGGTACGCCAA
TTGGTTATGCAGAATTAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5560#0      AGCCGGCGCGGCGACCAGTCGTCGCCGCCGGCCCCCTTTCCTCTCCGGCGCAGGCGAGGG 60
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GGGAGCAGATCGGGTAGGCGGAAAGCTGTCGTCATTCCCCCGCCGCATCGCGGCGAACGG 120
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CGCGGGCGTGGCAGCCTTGGGGTTCGCGGGACGACGCGCCCCCGACGCGCGCCTGCTTTG 180
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      AGATTGATGCCACTCGTGGGCTCGTGGCTCGACTGCATCGGTGGTGCCTGCGCACACGGC 240
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GCACCCCGTGAAGGCTTCGCGCCTTCGATCCGCTGCTGAGTTTGAAGAATTCTGAAGCAG 300
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CTTCAATAGCACCATCCATGACTGATTGACTGATCCCATGACTTATAACCTGCAAAATGG 360
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CAGAATTAGTAGAGACTTGGGTGCACAAGTAAGCTTTCTTTGTTCCCTTACTGCCTGCTA 420
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GTTAGTGATGATGTAGGAAAAGAATGCTTTGGTACTTATCTTATGAAGTAGCAACTTAAT 480
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CAGGAAAAATAGCATTTGAATGGTCCTTCTCTATATGCACAAATTGCACTTTTATATACA 540
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TGGTCCGTTCTTGTCATTACTGAAAGGTTTATAAAACACCCCAGTGATAGTGCTGGCAGC 600
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CTTGATATGTCCACATGGACGGAAAAAGAAAAAAAAATTGCAGTGGTTTAGAACCCAAAG 660
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CTAAAATATCGATTAGGTGTAGAGTCAGTTTCAGACTTGTGAACTTGAAATGTTAACCAA 720
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TCTTGTAAAAAGTAGATGATCATATAGAGGTTTTACATATGTCTTTTTTAACCTAGAAAG 780
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      AGATACTTTGGCATATCTTTTCAAATTTTGTGAATACTAATTTACAGTTCATCATTGAAA 840
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TATTTATTGTTACAAAGAACTAAGGTCTCAATTCAAAGTATCAAGTCATTCATTGCATTG 900
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CAATGATACGGTACTTTGCATATGTCATGTATTTGTGTACCTTCGGTTTGGCAAGCTAAT 960
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CAAGTCTAGCATGCTCACAGCACAAGGTTTGCTTCCGCTTCATCATTTGTGGGTTTCCAC 1020
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      ATAACAAACTGATAAAGTTTAGTTGTTTTTTTTCCTTATCTAGTTTTTCCCATTTTCATG 1080
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      AAAGAGCTGTTTAGCCCATACATAGAGTTGGTGCAGTGAATTGTACTATATGTACAGTTT 1140
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TCCTAGACTTGCACAGATCAAACTCTCCATTTTGGTGGGAGCAAAAATAGGATGCAGCTC 1200
consensus_5560#1      -------------------------------------------AGGGTAGCAATTCACTG 17
                                                                 *   *** *     ** 

consensus_5560#0      ATCAAACATGTAGTTCAGTAGATACAGACTGCCCATATCACCACTTCCAGAAAAAGGAGG 1260
consensus_5560#1      ACAATAGCTGTAAGCCTTC---CTCAAATTTCTCTTGCATGTATTCCTTGCCAATGCCTA 74
                      *  * *  ****   *        ** * * * * *      * * *  *  ** *    

consensus_5560#0      CGCATACCATATTCTTCACCGTTAGCGAACAATATTATGCTGCCATTGCTACCTGCAGGA 1320
consensus_5560#1      GGCCTTCTAGAATTGCTTCCATCAGTTTCAGAGCCACCACCCTTACTTCTAC--GGCATA 132
                       ** * * * * *     ** * **      *       *    * * ****  *    *

consensus_5560#0      TTTCAAAGAAGGGTCCCGAT---CTGATAGCTCCTAGGGTTCAATTACTTGCTCTTTGAT 1377
consensus_5560#1      TTTTGCCATGTATTCCCTATATATTGGTGGTTGCTGTGGCCAGTATTGCAGCCAATCGCA 192
                      ***          **** **    ** * * * **  **      *    **   * *  

consensus_5560#0      TTGGAGTTTTCTGCCA-GATAGAAATGTGGCTGGGACACAAGGATAAGCTTCCTTGGTTG 1436
consensus_5560#1      GAGGGGATGGGCATAATGCTTCAGGAATGCCCGAGACATACTAATGCCATCCTTTGAGCT 252
                        ** * *       * * *  *    ** * * **** *   **    * * ***    

consensus_5560#0      ACTACCCCATACCATTCTAGCACATGTCAAAATGGCGTC-AACGTAAACTGTCTTCAGTG 1495
consensus_5560#1      GGTATCGTAT------CTAACAGGTTGCCGGATATCATCTGATGCATACTCT-TTCTTTA 305
                        ** *  **      *** **  *  *   **  * **  * * * *** * ***  * 

consensus_5560#0      TTTGGACATAGGAAAAGACAAGTCTAGAGAGTAAGAACATGACAAAAAGGCTGTGTCACT 1555
consensus_5560#1      TCTCATTTGGCAGTTTGAAGAATTCTGAAGCAGCTTCAATAGCACCATCCATGACTGATT 365
                      * *             **  * *   **          **  **  *    **  * * *

consensus_5560#0      ACGTTGCGTTAAAGGAAATTTACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATA 1615
consensus_5560#1      G-ACTGATCCCATGACTTATAACCTGGAAGTATCCCAGATCACGGCATGCTTTGGCGATA 424
                          **     * *     * ***************************************

consensus_5560#0      TCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATC 1675
consensus_5560#1      TCGTTGACCACCCGGGACCGCACCGTGGGATCATCAAGACTGAGGTGGCCAAGGTTGATC 484
                      ************************************************************

consensus_5560#0      ACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTC 1735
consensus_5560#1      ACTGGCATTGGCGGCGGGTGGAGCTCCTGTGATGGCAGCTGCTCTTGAGGGATACCCTTC 544
                      ************************************************************

consensus_5560#0      GACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGCTGCA--GGTTGG 1793
consensus_5560#1      GACGTGTCAGACATTGTTGATCAGCGAAGAAGCCACACGCAGCTCAGGTACGCCAATTGG 604
                      *********************************************** * *     ****

consensus_5560#0      T---GCAAAAAAAAACCGCCGTTCTTCTCTGTTGTCTGTGCAGAAGCAGAACGCATACAT 1850
consensus_5560#1      TTATGCAGAATTAGAA-------------------------------------------- 620
                      *   *** **  * *                                             

consensus_5560#0      GTGCATAATACACCTGATGGATCCTCCTCACCTGGACAGGGGGCTCCAAAGGAGAAGTCA 1910
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      AGTTAGGCGACGCATTTCCATCCATTCATGCACTTTGCAGCGTCTCGAAATGGACTACAT 1970
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GGATCCTGTATCTGGTCCAGGAGAGGAGAAGCCGCTGGGCATAGGCAGCGTACCTACCTA 2030
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      CGTACGCTGGGAGCGCGTGGTGTGCGATGTTGCACCGCATCTGCATCATGCACAAGTAGC 2090
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      AATACTATATGAATCTTGAGTATGATGATGAATTGATGATGCTGAGCTACAGGCCAAGCT 2150
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GCGCGACGCGTGCAACTGGGCGCTGGATTTTCTTAAGACCCAAGGAAATTAAGACGAGCA 2210
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      AGCGGATAATATTTGTGGGGAGGCAAGTTGGTTTGATTTGGCCATACATACTGTGTTTTT 2270
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TGGCTGTCCAGGAGGGGCTCCCCCCGGGTCATGAAACCTGAACCGCTCGAAGGTTTCGGC 2330
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      ACTTAAATGTCGCAGTGGCAGCATCCCAAAAAAGGCCGTTTTTGGCAGCTCTCGTAGGTC 2390
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TGCAATTGTGAAAATTCTGTGGACAGCCACCCAGGTTTCGGTTTTGTCTCCTGTCTAGTC 2450
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TTGGTGGTATCGCGGTGCAGCTGTTCCTGCAAAAGAGATGGACGGTCAGGATCAAGCGTG 2510
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      GACTTCTCCGTTTTTGTTCTCTCTGTGTGCGTTTGTTCCTTTTCTGCCTACGTGTTTGTA 2570
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TGTTTCGTTGTTTAGTTGTTTAGTTTGGTTCTCTGCTAGAGCAGTGTGATGAGATATGAA 2630
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      ATCCTTGTGTAGAAGTCTAGAAGATACTGGAGTACCCTCTCCGTCCCACAATATAAGAGA 2690
consensus_5560#1      ------------------------------------------------------------
                                                                                  

consensus_5560#0      TTTTGAGTTTTTGATTGCAACGTTTGAT 2718
consensus_5560#1      ----------------------------