|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1429 fasta sequence
[TCTTTTTCCTGAGCCGCCGTGCCCCAGCCGCCTCTCCCCACGCTAGCCACTCTCTCCACCGCCGGCCGCCAACTCCAGCCGAGTCGCGCCGCCTCTCCGGTCGTCCCCGATCTGCGCCGTCGCCTCCCTCGGCTTTGTAGTGAAGAGCTCTATCCCGGCCACCCGTTCTTTTGCCCTGAACCCCGCCGGAAGTCGTCATCACTGTGAAGGCCGAACCGTCGCCATGTTTTGATCTCCGGCGAAGCTTTGCCGTCGACTCCGTGGTCGCCGAACCCCGCTGTCTCCTCCGTTGGCATCGCAGCGACAACAGCAAGCATGGCAGCCGCCCCCGTGAAGCCACAAGCCATCGGAGCGTCATCGTCACCGTGAAGCCGATCTAATCCATCTTCAGCCGTGCCGCTCATCGCCGTCCATCGCCGCCTTCGTTCGCTGTCGCCACCCACGGGATCGCAGGAGGGAGGTGAAGACTGTCCGCCCCTTAGTTGCTGCCTCCCCTCGTCAAAACGCCGCCGTCATCGTGGACAGAGCCACGCCGCCGCTTAATCTCGTCGCCGGCCATCTCCCGTCATCGTCCGTGGTCATGCCGGCCCTTGGTTTAGTTTTCCGTTGTTTCGGATGATCGTTCGTTCGTTGGAGGAGTTCCTGAAGACGAATTGAAGACGCTTGTTTGTAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCTTCGCTAGGTTTTATTTTTCCACTCTAGTTTTCTTCATGGCTTGGGAGAAGAACTTCAGGGTGTGACACCTCGCGATTCCCAACCCTAACCGCCGTCTCCCCGCCCCAAAGGTCTCCGGCGCGTGCTCCCCCCAACCACCGGCGCCGATTCCCAACCCTGCACGCCGGAAGCTCTCCCATCGCCAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTA-CATTGTTGAAC-AAAGTTGGTATTGGCTGTGCAA-CCAGAT-CAGTCG-CACAGGACTTTGTCC--AAATTGTGTGTGT-CA-TTCCTAATGGATG-CATAAA-CAATAATAAAACTTTTGTATGCGATATGTG-TTTGAT-CCTATG-AAG-AATGTGA-GGGGGATTTGGGTGATCTCA-CCAGCTGTTGGCTCTTA-CATGGCATGA-TTTACAGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAGCAGAACTATCGATATGCCGTGGATGAACATCCCTTGTTTGGATTAATTTGCATCAAAAAA]
[+] EMBL AK101768 [TCTTTTTCCTGAGCCGCCGTGCCCCAGCCGCCTCTCCCCACGCTAGCCACTCTCTCCACCGCCGGCCGCCAACTCCAGCCGAGTCGCGCCGCCTCTCCGGTCGTCCCCGATCTGCGCCGTCGCCTCCCTCGGCTTTGTAGTGAAGAGCTCTATCCCGGCCACCCGTTCTTTTGCCCTGAACCCCGCCGGAAGTCGTCATCACTGTGAAGGCCGAACCGTCGCCATGTTTTGATCTCCGGCGAAGCTTTGCCGTCGACTCCGTGGTCGCCGAACCCCGCTGTCTCCTCCGTTGGCATCGCAGCGACAACAGCAAGCATGGCAGCCGCCCCCGTGAAGCCACAAGCCATCGGAGCGTCATCGTCACCGTGAAGCCGATCTAATCCATCTTCAGCCGTGCCGCTCATCGCCGTCCATCGCCGCCTTCGTTCGCTGTCGCCACCCACGGGATCGCAGGAGGGAGGTGAAGACTGTCCGCCCCTTAGTTGCTGCCTCCCCTCGTCAAAACGCCGCCGTCATCGTGGACAGAGCCACGCCGCCGCTTAATCTCGTCGCCGGCCATCTCCCGTCATCGTCCGTGGTCATGCCGGCCCTTGGTTTAGTTTTCCGTTGTTTCGGATGATCGTTCGTTCGTTGGAGGAGTTCCTGAAGACGAATTGAAGACGCTTGTTTGTAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCTTCGCTAGGTTTTATTTTTCCACTCTAGTTTTCTTCATGGCTTGGGAGAAGAACTTCAGGGTGTGACACCTCGCGATTCCCAACCCTAACCGCCGTCTCCCCGCCCCAAAGGTCTCCGGCGCGTGCTCCCCCCAACCACCGGCGCCGATTCCCAACCCTGCACGCCGGAAGCTCTCCCATCGCCAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTA CATTGTTGAAC AAAGTTGGTATTGGCTGTGCAA CCAGAT CAGTCG CACAGGACTTTGTCC AAATTGTGTGTGT CA TTCCTAATGGATG CATAAA CAATAATAAAACTTTTGTATGCGATATGTG TTTGAT CCTATG AAG AATGTGA GGGGGATTTGGGTGATCTCA CCAGCTGTTGGCTCTTA CATGGCATGA TTTACAGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAGCAGAACTATCGA ]
[+] EMBL AU173411 [ TTGGTGCAGGCTTTNTTAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACCATTGTTGAACAAAAGTTGGTATTGGCTGTGCAACCCAGATCCAGTCGCCCCAGGACTTTGTCCCAAAATGGTGTGTGTCCATTTCCTAATGGATGCCATAAACCAATAATAAAACTTTTGTATGCGATATGTGTTTTGATCCCTATGAAAGAAATGTGAGGGGGGATTTGGGTGATCTCACCCAGCTGTTGGCTCTTACCATGGCATGATTTTCCAGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAGCAGAACTATCGATATGCCGTGGATGAACATCCCTTGTTTGGATTAATTTGCATCAAAAAA]
consensusID : consensus_5565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[ATCCCGTTTGTATCCATGGGTACAAAGTGCTAGCATCAGGATACATATATTCTTCTTTTATTGTCAAGCAGTTCATGAGCACCAATCGATCCATTCTTTTTCTGATCATGTTGTGCTAATTTATATTTGTTCAGATTTACATGCCATTTGGGTTCACATATTCATAGTTATCAAATATTTCTGTCATTAGAGTAGCTGGACTGACAATCATTTTTAGTTACAGTGGTATATTTGGCAGAAATCTCACATCTTAATATCTCAAAATTAAAGTAACAATACTCAAATAAACTTTTCCTCATGATTTCTATTGTGCTTTAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTGGTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAAATGTGTGTGTCATTCCTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGGGGTTGATCTAAGGAAGAATGTG]
[-] EMBL CB684975 [ATCCCGTTTGTATCCATGGGTACAAAGTGCTAGCATCAGGATACATATATTCTTCTTTTATTGTCAAGCAGTTCATGAGCACCAATCGATCCATTCTTTTTCTGATCATGTTGTGCTAATTTATATTTGTTCAGATTTACATGCCATTTGGGTTCACATATTCATAGTTATCAAATATTTCTGTCATTAGAGTAGCTGGACTGACAATCATTTTTAGTTACAGTGGTATATTTGGCAGAAATCTCACATCTTAATATCTCAAAATTAAAGTAACAATACTCAAATAAACTTTTCCTCATGATTTCTATTGTGCTTTAGGTGTTATATATAATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAACGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAGCTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTGGTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAAATGTGTGTGTCATTCCTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGGGGTTGATCTAAGGAAGAATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5565#0 TCTTTTTCCTGAGCCGCCGTGCCCCAGCCGCCTCTCCCCACGCTAGCCACTCTCTCCACC 60
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 GCCGGCCGCCAACTCCAGCCGAGTCGCGCCGCCTCTCCGGTCGTCCCCGATCTGCGCCGT 120
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 CGCCTCCCTCGGCTTTGTAGTGAAGAGCTCTATCCCGGCCACCCGTTCTTTTGCCCTGAA 180
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 CCCCGCCGGAAGTCGTCATCACTGTGAAGGCCGAACCGTCGCCATGTTTTGATCTCCGGC 240
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 GAAGCTTTGCCGTCGACTCCGTGGTCGCCGAACCCCGCTGTCTCCTCCGTTGGCATCGCA 300
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 GCGACAACAGCAAGCATGGCAGCCGCCCCCGTGAAGCCACAAGCCATCGGAGCGTCATCG 360
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 TCACCGTGAAGCCGATCTAATCCATCTTCAGCCGTGCCGCTCATCGCCGTCCATCGCCGC 420
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 CTTCGTTCGCTGTCGCCACCCACGGGATCGCAGGAGGGAGGTGAAGACTGTCCGCCCCTT 480
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 AGTTGCTGCCTCCCCTCGTCAAAACGCCGCCGTCATCGTGGACAGAGCCACGCCGCCGCT 540
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 TAATCTCGTCGCCGGCCATCTCCCGTCATCGTCCGTGGTCATGCCGGCCCTTGGTTTAGT 600
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 TTTCCGTTGTTTCGGATGATCGTTCGTTCGTTGGAGGAGTTCCTGAAGACGAATTGAAGA 660
consensus_5565#1 --------ATCCCGTTTG--TATCCATGGGTACAAAGTGCT-------AGCATCAGGATA 43
* ** ** * * * ** * * * * * * * * *
consensus_5565#0 CGCTTGTTTGTAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCC 720
consensus_5565#1 CATATATTCTTCTTTTATTGTCAAGCAGTTCATGAGCACCAATCGATCCATTCTTTTTCT 103
* * ** * ** * ** * ** ** * * ** * * * *
consensus_5565#0 AGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCTTCGCTAGGTTTTATTTTTCCACTCTAG 780
consensus_5565#1 GATCATGTTGT--------GCTAATTTATA--TTTGTTCAGATTTACATG-CCATTTGGG 152
* * ** * * * * ** * * * **** * *** * *
consensus_5565#0 TTTTC---TTCATGGCTTGGGAGAAGAACT----TCAGGGTGTGACACCTCGCGATTCCC 833
consensus_5565#1 TTCACATATTCATAGTTATCAAATATTTCTGTCATTAGAGTAGCTGGACTGACAATCATT 212
** * ***** * * * * ** * ** ** ** * **
consensus_5565#0 AACCCTAACCGCCGTCTCCCCGCCCCAAAGGTCTCCGGCGCGTGCTCCCCCCAACCACCG 893
consensus_5565#1 TTTAGTTACAGTGGTATATTTGG--CAGAAATCTCACAT-CTTAATATCTCAAAATTAAA 269
* ** * ** * * ** * **** * * * * * **
consensus_5565#0 GCGCCGATTCCCAACC---CTGCACGCCGGAAGCTCTCCCAT-CGCCAGGTGTTATATAT 949
consensus_5565#1 GTAACAATACTCAAATAAACTTTTCCTCATGATTTCTATTGTGCTTTAGGTGTTATATAT 329
* * ** * *** ** * * * *** * * *************
consensus_5565#0 AATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAA 1009
consensus_5565#1 AATTTTGAGATACCGGTCACGCCGACGCCGTCTTCTCCCTACTTCACCCGCAGGGTGAAA 389
************************************************************
consensus_5565#0 CGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAG 1069
consensus_5565#1 CGACAGTTGAAGGTTACTAGAGCGTTTGGTGCAGGCTTTCTAAATAAGATACAAGTGAAG 449
************************************************************
consensus_5565#0 CTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTG 1129
consensus_5565#1 CTATTTGTGTGAGCTCTAGCTGTACCAAAATCTCTCGAGTTACATTGTTGAACAAAGTTG 509
************************************************************
consensus_5565#0 GTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAATTGTGTGTGTCATTC 1189
consensus_5565#1 GTATTGGCTGTGCAACCAGATCAGTCGCACAGGACTTTGTCCAAAATGTGTGTGTCATTC 569
********************************************* **************
consensus_5565#0 CTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGTGTTTGATCCTATGAA 1249
consensus_5565#1 CTAATGGATGCATAAACAATAATAAAACTTTTGTATGCGATATGGGGTTGATCTAAGGAA 629
******************************************** * ****** * ***
consensus_5565#0 GAATGTGAGGGGGATTTGGGTGATCTCACCAGCTGTTGGCTCTTACATGGCATGATTTAC 1309
consensus_5565#1 GAATGTG----------------------------------------------------- 636
*******
consensus_5565#0 AGTGTGTAAAAAAACATGACGTGCTCTGTAAGAATTGATGAGTCTTGTTCAATATAAAAG 1369
consensus_5565#1 ------------------------------------------------------------
consensus_5565#0 CAGAACTATCGATATGCCGTGGATGAACATCCCTTGTTTGGATTAATTTGCATCAAAAAA 1429
consensus_5565#1 ------------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||