|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1596 fasta sequence
[TGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCGATGATGAGTTGTGGTATCGCGCTGTTGAGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTAAGGAATTTTTACATATCGTAGATAAAATAAACTTATATGACCATTAGGTAACATCAGTGATACATTCTTTTCCTTCCTTTTTCTGTAAGATAACCATACCGATCAAGCTTATTTATGTGTTAACCATTTGCAGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGTATTAGGAAATATGAGTTATGAGTTACTTCTTTTAATGCCCTCTTGCTCTGCTTGTTATAATATGATGATCAAAAGCTTATGTTATTAGCTAATGAAGGTGAGTTGCAACTCATGCTGTGCATATTTAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTC]
[+] EMBL AK073594 [TGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCGATGATGAGTTGTGGTATCGCGCTGTTGAGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTAAGGAATTTTTACATATCGTAGATAAAATAAACTTATATGACCATTAGGTAACATCAGTGATACATTCTTTTCCTTCCTTTTTCTGTAAGATAACCATACCGATCAAGCTTATTTATGTGTTAACCATTTGCAGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGTATTAGGAAATATGAGTTATGAGTTACTTCTTTTAATGCCCTCTTGCTCTGCTTGTTATAATATGATGATCAAAAGCTTATGTTATTAGCTAATGAAGGTGAGTTGCAACTCATGCTGTGCATATTTAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTC]
consensusID : consensus_5601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1428 fasta sequence
[CTGGGCTTTCACTGTGCAGGTGGGTTGCTCGAACTGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAA-GGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCAATGATGAGTTGTGGTATCGCGCTGTTGAGGTATCCGTGCTTTTGTTGACTTGCACTCAAAGAAGTAATCCACGTAGCCCTTGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTCTTTACCATGGA]
[+] EMBL AK063936 [CTGGGCTTTCACTGTGCAGGTGGGTTGCTCGAACTGTCCAGTCCGGCGTCCGCCGCCGATGGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCCGCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCACCAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGGCGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGCCTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGCCGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGGGATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAA GGCCACGTGCGTGGACACGGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGAAGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCAATGATGAGTTGTGGTATCGCGCTGTTGAGGTATCCGTGCTTTTGTTGACTTGCACTCAAAGAAGTAATCCACGTAGCCCTTGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAAAAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTTCCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGATGACAAGACAGTTCTTCTGGTCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGCTGGTGGATGAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAATCACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCTTGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTATGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTAGCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGATTTCTTTACCATGGA]
[+] EMBL D42374 [ gtTGCC GAGGTGGTCCCGCCGCTGAAGGATG TGTTAAGGGCTACGTCCGTGGCCACGGGGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCACCAGTTCAGGTGGCTGGTGTCTCAGGTCACTTATTCTAAGCTTGGC ACTTGTGTTGGCTAGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGG CACCGGAAGTTAAGGAACAGGGAATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5601#0 ----------------------------------TGTCCAGTCCGGCGTCCGCCGCCGAT 26
consensus_5601#1 CTGGGCTTTCACTGTGCAGGTGGGTTGCTCGAACTGTCCAGTCCGGCGTCCGCCGCCGAT 60
**************************
consensus_5601#0 GGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCC 86
consensus_5601#1 GGCCCCTCCCGCCGCCGGCGCGGCGATCCCCCGCGACGCCCTCCTCCGCATCGCGGCGCC 120
************************************************************
consensus_5601#0 GCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCAC 146
consensus_5601#1 GCTCCGGGACTCCCTCGCCGCGGCGCCCTACGCGCCTCCGGAGGGCTCCTCCACCTCCAC 180
************************************************************
consensus_5601#0 CAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGG 206
consensus_5601#1 CAAGTCCCTCCTCTCTTCCCTCCTCCCCTCGTCCCATCCCCAGGCTCCGGCTGGCGGCGG 240
************************************************************
consensus_5601#0 CGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGC 266
consensus_5601#1 CGGGGCCCGCAGCAAGGAGGCCGCGGGCCTCCTCCTCTTCTGCGCCGCCGCGCGCGCGGC 300
************************************************************
consensus_5601#0 CTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGC 326
consensus_5601#1 CTCCCCGGAGTACCCCGCGCTGCACTGGGTTCCCGTGGCGCTCTCTGACGCTGCCGCCGC 360
************************************************************
consensus_5601#0 CGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGG 386
consensus_5601#1 CGCGGTGGAGGAGATGGCGGCGGCGGGCGGCTGGGGCGATGTAGGGGAGATGGTGGTGGG 420
************************************************************
consensus_5601#0 GATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACAC 446
consensus_5601#1 GATGATGCCGGAGGTGGTGCCGCCGCTGAAGGATGTTGTGAAGGCCACGTGCGTGGACAC 480
************************************************************
consensus_5601#0 GGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCA 506
consensus_5601#1 GGAGGATGAGGAAATTGGCAAGGAGAAGCCGCCCAAAGAGCACGCCGTTGTCGCCGCTCA 540
************************************************************
consensus_5601#0 CCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCT 566
consensus_5601#1 CCAGTTCAGGTGGCTGGTGTCTCAGGTTACTTATCCTAAGCTTGGCGACTTGTGTTGGCT 600
************************************************************
consensus_5601#0 AGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGG 626
consensus_5601#1 AGTGATTCCGTGTGCTTTGACTGCCTTGGACCATTGGTCACCGGAAGTTAAGGAACAGGG 660
************************************************************
consensus_5601#0 AATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGA 686
consensus_5601#1 AATGGTTAGCTTCATGCACATAGCAAAGAGTGTGAAAGCAACAGAATTAAATTTGTATGA 720
************************************************************
consensus_5601#0 AGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCGATGATGAGTTGTGGTATCG 746
consensus_5601#1 AGATGCAATACTTGACGCATGCTGCCATAACATTCCCGCCAATGATGAGTTGTGGTATCG 780
**************************************** *******************
consensus_5601#0 CGCTGTTGAGGTAT---------------------------------------------- 760
consensus_5601#1 CGCTGTTGAGGTATCCGTGCTTTTGTTGACTTGCACTCAAAGAAGTAATCCACGTAGCCC 840
**************
consensus_5601#0 -------GATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAA 813
consensus_5601#1 TTGGTATGATCGTATGCTAGCTGAGATGTTGGGCCACCTGGAGCGGCAACCATTAAATAA 900
*****************************************************
consensus_5601#0 AAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTT 873
consensus_5601#1 AAAACGCCGTGTTGCATGGCTTACCCTTATTGGGCCAGTTTTTGAAGCTATGGGCCTCTT 960
************************************************************
consensus_5601#0 CCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGA 933
consensus_5601#1 CCTATTAGCACATTTTCGTCTCCTTTTCTCTCTCTTCTTTCAATGGATGCATGCCGATGA 1020
************************************************************
consensus_5601#0 TGACAAGACAGTTCTTCTGGTAAGGAATTTTTACATATCGTAGATAAAATAAACTTATAT 993
consensus_5601#1 TGACAAGACAGTTCTTCTGGT--------------------------------------- 1041
*********************
consensus_5601#0 GACCATTAGGTAACATCAGTGATACATTCTTTTCCTTCCTTTTTCTGTAAGATAACCATA 1053
consensus_5601#1 ------------------------------------------------------------
consensus_5601#0 CCGATCAAGCTTATTTATGTGTTAACCATTTGCAGGTCTTAGAGCGAATCCATGAAGTTA 1113
consensus_5601#1 -------------------------------------CTTAGAGCGAATCCATGAAGTTA 1064
***********************
consensus_5601#0 TTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGTATTAGGAAATATGAGTTA 1173
consensus_5601#1 TTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGG------------------- 1105
*****************************************
consensus_5601#0 TGAGTTACTTCTTTTAATGCCCTCTTGCTCTGCTTGTTATAATATGATGATCAAAAGCTT 1233
consensus_5601#1 ------------------------------------------------------------
consensus_5601#0 ATGTTATTAGCTAATGAAGGTGAGTTGCAACTCATGCTGTGCATATTTAGGCTGGTGGAT 1293
consensus_5601#1 ---------------------------------------------------CTGGTGGAT 1114
*********
consensus_5601#0 GAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAAT 1353
consensus_5601#1 GAGCTTGTCCTTTTATACAAAGAGTCAGCCACAAGGAGCAGCCGTGAGGTCGTGTGGAAT 1174
************************************************************
consensus_5601#0 CACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCT 1413
consensus_5601#1 CACATCCTGGAAATGCTCGCTACACTCCAGAAATGCAAGGGGCAGCAATTTGAGGAAGCT 1234
************************************************************
consensus_5601#0 TGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTA 1473
consensus_5601#1 TGGAAGAAGCACGAAGTTGACCCAGACTTGACGATGTTGCTATCATGTTTCAATGAATTA 1294
************************************************************
consensus_5601#0 TGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTA 1533
consensus_5601#1 TGTACCAAAAATCATTCTTCCTGATTTCCAGTGTGACTGGTATTCTTGTTGTAAATACTA 1354
************************************************************
consensus_5601#0 GCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGAT 1593
consensus_5601#1 GCTGTTAGATGAAATTGAGCCTTGAAAATCTTGGCCGTTGGTCCCTTCTCTTTATGAGAT 1414
************************************************************
consensus_5601#0 TTC----------- 1596
consensus_5601#1 TTCTTTACCATGGA 1428
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||