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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1040 fasta sequence
[GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGGTAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCAATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATATGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTAATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATTTATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGATATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCATCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGTATTTATCCTCTTCTAAAAAA]
[+] EMBL AK121277 [GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGGTAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCAATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATATGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTAATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTT ]
[+] EMBL AU172653 [ TCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATTTTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATTTATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGATATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCATCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGTATTTATCCTCTTCTAAAAAA]
consensusID : consensus_5623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[AGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA]
[+] EMBL AU172652 [AGCTAGATGGCTTCTTTCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCGCGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCCTCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACATGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCTGAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACCCATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCATTATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5623#0 GAGAGCACAGCGGAGGGAGATCGAACAAGAGACGAATAGCCAGCAAAATAATTAAAGAGG 60
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 TAGCTGGAGAGAAGGAGAGAGAGAGAGAGAGAGATCGACGAGCTAGCTAGATGGCTTCTT 120
consensus_5623#1 --------------------------------------------AGCTAGATGGCTTCTT 16
****************
consensus_5623#0 TCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCG 180
consensus_5623#1 TCGGCGTGGCCCCCGTTGGAAACGCGGCGAGCGGCAAGAAGATCTTCCGGACCAAGTGCG 76
************************************************************
consensus_5623#0 CGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCC 240
consensus_5623#1 CGCAGTGCCACACGGTGGAGCGCGGGGGCGCGCACAAGCAGGGTCCCAACCTTCATGGCC 136
************************************************************
consensus_5623#0 TCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACA 300
consensus_5623#1 TCTTCGGCCGCCAGTCCGGCACCACCCCCGGCTACGCCTACTCCACCGCCAACAAGAACA 196
************************************************************
consensus_5623#0 TGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAGGTCA 360
consensus_5623#1 TGGCCGTCGTCTGGGAGGAAGGCACCCTCTACGACTACCTGCTCAACCCTAAGAAG---- 252
********************************************************
consensus_5623#0 ATTATATTAATTATTTCTCTTTTATTTACTCTAGCTAATTTAATTAATTGTTGTTGTATA 420
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 TGTATAATTCCTCAATCATCAACACCAAGATCGAGTACGTACGCAATTTGCTAATAATTA 480
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 ATAACGGCTGAGGCTGGCTTTGCAGTACATTCCGGGCACCAAGATGGTGTTCCCCGGCCT 540
consensus_5623#1 -------------------------TACATTCCGGGCACCAAGATGGTGTTCCCCGGCCT 287
***********************************
consensus_5623#0 GAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACC 600
consensus_5623#1 GAAGAAGCCGCAGGAGCGCACCGACCTCATCGCCTACCTCAAGGAATCTACCGCCTAACC 347
************************************************************
consensus_5623#0 CATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCAT 660
consensus_5623#1 CATCCATCCATCTATCCATCATCTGCTTGCTGCAAAATATATATATATATATCGTATCAT 407
************************************************************
consensus_5623#0 TATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAATGTATGACACCGTTGATT 720
consensus_5623#1 TATGTTTGTGTACCCCTATGTTATACTCCTTCCGTATTTTAA------------------ 449
******************************************
consensus_5623#0 TTTCGACCAACGTTTGACCATTCGTTTTATTCAATTTTTTTTTGCAAATATGAAAATATT 780
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 TATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTTATAATAAAATAAATGATAATT 840
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 ACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACGGCGTGAT 900
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 ATATTAAAATATGGAGGGAGTAGTATATAGCATCTATCTCAATAAGCATGCATGCATGCA 960
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 TCTGTTTAATTATCTGTTCCAACCATGCGTGCGTGCGTATTTGAAATTAAGAAGCATCGT 1020
consensus_5623#1 ------------------------------------------------------------
consensus_5623#0 ATTTATCCTCTTCTAAAAAA 1040
consensus_5623#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||