cluster # 5626

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Oryza sativa
cluster # 5626 cluster # 5626 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5626#0 length = 451 sequences # 1

consensus_5626#1 length = 357 sequences # 2

consensusID : consensus_5626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TGAAAAATAGAGATGAATCATTGTGACAACTCAGTAGCTTNCCTACGCTTGGTGATNCTTCCGTCCCTCGTGTCCCTCTATTTCTATGGCGAGTGGCTTGTGCACGACACTGGCCGGTCCAGGAGTTTTGGAGCCTTGTTCCTGCAGGTGTTGGGATTAGCTTCATTGAGACATTTTGATACTCTGACGCCCAAGTTGTTCCGAGTGATTCGGAGTTAGTGGTGGTGAAATTTCCACACTACAATACTATTTACATCTGCAATGACGCTGCCAACACTAGTCTTATCCTCTGAGGTTTCTTCCATATATCTGTGCTCTTCGTGTCCTTGAGAACTATATTACTGATAGGATGCCACTGTGTATCACTGTAATGTATTCCTGCATGGCCTAAAACTGCATATACTACAGATTGGTAGGCACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU097560             [TGAAAAATAGAGATGAATCATTGTGACAACTCAGTAGCTTNCCTACGCTTGGTGATNCTTCCGTCCCTCGTGTCCCTCTATTTCTATGGCGAGTGGCTTGTGCACGACACTGGCCGGTCCAGGAGTTTTGGAGCCTTGTTCCTGCAGGTGTTGGGATTAGCTTCATTGAGACATTTTGATACTCTGACGCCCAAGTTGTTCCGAGTGATTCGGAGTTAGTGGTGGTGAAATTTCCACACTACAATACTATTTACATCTGCAATGACGCTGCCAACACTAGTCTTATCCTCTGAGGTTTCTTCCATATATCTGTGCTCTTCGTGTCCTTGAGAACTATATTACTGATAGGATGCCACTGTGTATCACTGTAATGTATTCCTGCATGGCCTAAAACTGCATATACTACAGATTGGTAGGCACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5626#0
TGAAAAATAGAGATGAATCATTGTGACAACTCAGTAGCTTNCCTACGCTTGGTGATNCTT
CCGTCCCTCGTGTCCCTCTATTTCTATGGCGAGTGGCTTGTGCACGACACTGGCCGGTCC
AGGAGTTTTGGAGCCTTGTTCCTGCAGGTGTTGGGATTAGCTTCATTGAGACATTTTGAT
ACTCTGACGCCCAAGTTGTTCCGAGTGATTCGGAGTTAGTGGTGGTGAAATTTCCACACT
ACAATACTATTTACATCTGCAATGACGCTGCCAACACTAGTCTTATCCTCTGAGGTTTCT
TCCATATATCTGTGCTCTTCGTGTCCTTGAGAACTATATTACTGATAGGATGCCACTGTG
TATCACTGTAATGTATTCCTGCATGGCCTAAAACTGCATATACTACAGATTGGTAGGCAC
CGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_5626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 357
fasta sequence

                              [AAGATTGCATACTTAATGAACTTGAGGTGCTTCAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGCAGACATGATAATGAGGAAAAAAATGGCAGACATGATAATNAGGATGAGCTTGAAAGTATTTATCTCGATGAATTGGTGGAGCAGTCATTCCTTCAAGAAATTTATTTTTGATGTTCTTGATGACGACGAGTTGAAATTTCCTTTTTCTCAAATTAACTGAAAATAGAGATGAATCATTGTGACACTCAGTAGCTTCCTACGCTTGGTGATCTTCCGTCCCTCGTGTCCCNCTATTTTCTATGGCGAGTGGCTTTNTGCACGACACTGGACCGGNCCAGGGAGTTTTNG]

[+] EMBL AU066339             [AAGATTGCATACTTAATGAACTTGAGGTGCTTCAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGCAGACATGATAATGAGGAAAAAAATGGCAGACATGATAATNAGGATGAGCTTGAAAGTATTTATCTCGATGAATTGGTGGAGCAGTCATTCCTTCAAGAAATTTATTTTTGATGTTCTTGATGACGACGAGTTGAAATTTCCTTTTTCTCAAATTAACTGAAAATAGAGATGAATCATTGTGACACTCAGTAGCTTCCTACGCTTGGTGATCTTCCGTCCCTCGTGTCCCNCTATTTTCTATGGCGAGTGGCTTTNTGCACGACACTGGACCGGNCCAGGGAGTTTTNG]
[+] EMBL AU066195             [AAGTTNGCATACTTAATGAACTTGAGGTGCTTCAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGCAGACATGATAATGAGG AAAAAATGGCAG CATGATAATGAGGATGAGCTTGAAAGTATTTATCTCGATGAATTGGTGGAG AGTCATTCCTTCAAG AATTTATTTTTGATGTTCTTGATGCCGCCGAGTTGAAATTTCCTTTTTCTCAAATT ACTG AAATAGAG TG ATCATTGTG CACTCAGANGCTTCCTACGNTTGGTG TCTTCCG CCCTCGTG CCCTCTA                                                       ]




>consensus_5626#1
AAGATTGCATACTTAATGAACTTGAGGTGCTTCAGTTGTTGAAATTAGTTGATCCCTTCA
AAAAATGGCAGACATGATAATGAGGAAAAAAATGGCAGACATGATAATNAGGATGAGCTT
GAAAGTATTTATCTCGATGAATTGGTGGAGCAGTCATTCCTTCAAGAAATTTATTTTTGA
TGTTCTTGATGACGACGAGTTGAAATTTCCTTTTTCTCAAATTAACTGAAAATAGAGATG
AATCATTGTGACACTCAGTAGCTTCCTACGCTTGGTGATCTTCCGTCCCTCGTGTCCCNC
TATTTTCTATGGCGAGTGGCTTTNTGCACGACACTGGACCGGNCCAGGGAGTTTTNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5626#0      TGAAAAATAGAGATGAATCATTGTGACAACTCAGTAGCTTNCCTACGCTTGGTGATNCTT 60
consensus_5626#1      ---------------------------AAGATTGCATACTTAATGAACTTGA-GGTGCTT 32
                                                 **    * *   *   *   ****  * * ***

consensus_5626#0      CCGTCCCTCGTGTCCCTCTATTTCTATGGCGAGTGGCTTGTGCACGACACTGGCCGGTCC 120
consensus_5626#1      CAGTTGTTGAAATTAGTTGATCCCTTCAAAAAATGGC--AGACATGATAATGA--GG--- 85
                      * **   *    *   *  **  **      * ****     ** ** * **   **   

consensus_5626#0      AGGAGTTTTGGAGCCTTGTTCCTGCAGGTGTTGGGATTAGCTTCATTG-AGACATTTTGA 179
consensus_5626#1      AAAAAAATGGCAGACATGATA--------ATNAGGATGAGCTTGAAAGTATTTATCTCGA 137
                      *  *   * * ** * ** *          *  **** ***** *  * *   ** * **

consensus_5626#0      TACTCTGACGCCCAAGTTGTTCC---GAGTGATTCGGAGTTAGTGGTGGTGAAATTTCCA 236
consensus_5626#1      TGAATTGGTGGAGCAGTCATTCCTTCAAGAAATTTATTTTTGATGTTCTTGATGACGACG 197
                      *    **  *    ***  ****    **  ***     **  ** *  ***      * 

consensus_5626#0      CACTACAATACTATTTACATCTGCAATGACGCTGCCAACACTAGTCTTATCCTCTGAGGT 296
consensus_5626#1      AGTTGAAATTTCCTTTT--TCTCAAATTA-ACTGAAAATAGAGATGAATCATTGTGACAC 254
                         *  ***    ***   ***  *** *  ***  ** *    *       * ***   

consensus_5626#0      TTCTTCCATATATCTGTGCTCTTCGTGTCCTTGAGAACTATATTACTGATAGGATGCCAC 356
consensus_5626#1      T----CAGTAGCTTCCTACGCTTGGTGATCTTCCG-------TCCCTCGTGTCCCNCTAT 303
                      *    *  **  *   * * *** ***  ***  *       *  **  *      * * 

consensus_5626#0      TGTGTATCACTGTAATGTATTCCTGCATGGCCTAAAACTGCATATACTACAGATTGGTAG 416
consensus_5626#1      TTTCTATGGCG--AGTGGCTTTNTGCACGACACTGGACCGG----NCCAGGGAGTTTTNG 357
                      * * ***  *   * **  **  **** * *     ** *      * *  ** *  * *

consensus_5626#0      GCACCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 451
consensus_5626#1      -----------------------------------