cluster # 5677

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Oryza sativa
cluster # 5677 cluster # 5677 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5677#0 length = 531 sequences # 2

consensus_5677#1 length = 455 sequences # 1

consensusID : consensus_5677#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 531
fasta sequence

                              [ATCTTTTAATTTCTTTAAATATCTTTTCTTTATTTATTTAATTACCTTTTCTTTATTTTAAAATACCATTTTTATTTCCAACCTATAGAAACCGACATCGTTTTCTTTCAAAATTTAAATATCTTTTGACCTATTACCTTTGTCTCTCTT-CATGCTCTAATTTTGTTTTATTTTACCGTTTATTTATAGTACTTTTCCGTATAGGCTTTATTTGCCATCTTTTACGNATACGTACGTTAGGACAATACAGAGGATTTTGTCGGCATCAGAGCTGATGTGGGATGCAGCCGACTACGCTGAAGGCCTCTGAAAATTTCAAGGCGCAAGGCAGGAAACAATTAAAATTTTGACCCNCATGGAATAATCAACCCCATATTTACTTTATGCCTAAGGTTAATCATATGAATAACATTTGGGNGGGCTTAAGGNGATATTTAAAGGTTTTAAGCATTGTTATATGAGATTATGGAAAGATACAGTGGACATCATTTTATGTGATTTATTATTCAAATATCTTTACAAACTTAAAAA]

[+] EMBL C28765               [ATCTTTTAATTTCTTTAAATATCTTTTCTTTATTTATTTAATTACCTTTTCTTTATTTTAAAATACCATTTTTATTTCCAACCTATAGAAACCGACATCGTTTTCTTTCAAAATTTAAATATCTTTTGACCTATTACCTTTGTCTCTCTT CATGCTCTAATTTTGTTTTATTTTACCGTTTATTTATAGTACTTTTCCGTATAGGCTTTATTTGCCATCTTTTACGNATACGTACGTTAGGACAATACAGAGGATTTTGTCGGCATCAGAGCTGATGTGGGATGCAGCCGACTACGCTGAAGGCCTCTGAAAATTTCAAGGCGCAAGGCAGGAAACAATTAAAATTTTGACCCNCATGGAATAATCAACCCCATATTTACTTTATGCCTAAGGTTAATCATATGAATAACATTTGGGNGGGCTTAAGGNGATATTTAAAGG                                                                                          ]
[+] EMBL AU093078             [                                                          TAAAATNCCATTTTTATTTCCAACCTATAGAAACCGACATCGTTTTCTTTCAAAATTTAAATATCTTTTGNCCTATTCCCTTTGTCTCTCTTCCATGCTCTAATTTTGTTTTATTTTNCCGTTTATTTATAGTACTTNTCCGTATAGGCTTTATTTGCCNTCTTTTACGTATNCGTACGTTA GACAATACAGAAGATTTTGTCGGCATCAGAGCTGATGT GGATGCAGCCGACTACGCTGAA GCCTCTGAAAATTTCAAGGCGCAAGGCAAGAAACAATTAAAATTTTGA CCACATGAAATAATCAACCCCATATTTACTTTATGCCTAA GTTAATCATATGAATAACATTTTGG TGGCTTAAAGTGATATTTAATGTTTTTAAGCATTGTTATATGAGATTATGGAAAGATACAGTGGACATCATTTTATGTGATTTATTATTCAAATATCTTTACAAACTTAAAAA]




>consensus_5677#0
ATCTTTTAATTTCTTTAAATATCTTTTCTTTATTTATTTAATTACCTTTTCTTTATTTTA
AAATACCATTTTTATTTCCAACCTATAGAAACCGACATCGTTTTCTTTCAAAATTTAAAT
ATCTTTTGACCTATTACCTTTGTCTCTCTTCATGCTCTAATTTTGTTTTATTTTACCGTT
TATTTATAGTACTTTTCCGTATAGGCTTTATTTGCCATCTTTTACGNATACGTACGTTAG
GACAATACAGAGGATTTTGTCGGCATCAGAGCTGATGTGGGATGCAGCCGACTACGCTGA
AGGCCTCTGAAAATTTCAAGGCGCAAGGCAGGAAACAATTAAAATTTTGACCCNCATGGA
ATAATCAACCCCATATTTACTTTATGCCTAAGGTTAATCATATGAATAACATTTGGGNGG
GCTTAAGGNGATATTTAAAGGTTTTAAGCATTGTTATATGAGATTATGGAAAGATACAGT
GGACATCATTTTATGTGATTTATTATTCAAATATCTTTACAAACTTAAAAA

consensusID : consensus_5677#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [GAGTAGAAAAAATCATATGAATAACATTTTGGTGGCTTAAAGTGATATTTAATGTTTTTAAGCATTGTTATATGAGATTATGGAAAGATACAGTGGACATCATTTTATGTGATTTATTATTCAAATATCTTTACAAACTTAAAAATCCGGTTAAAATGGGCATTTTTGTGTTGTAATGATGAATGTTGATGAATGATGAAGTTTGTGGTGTTGGTGTGGGGAGTTTGGAAAGTTTTGAATGGTTTAACCGGATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGCGTCCATCCACACGACCAAGTAATTGGACTTAGCCTATTACATTGTCCCACTTTATGAAAGACTGTTGGGTGGCTCTATGAGTGGTTTTGGGGTAAACATGCATAAGGAGTTAGGGGGCAGTGTTTCACAACAGTGGGATTCATGAAAGTGTGACGATATAGA]

[+] EMBL CF327628             [GAGTAGAAAAAATCATATGAATAACATTTTGGTGGCTTAAAGTGATATTTAATGTTTTTAAGCATTGTTATATGAGATTATGGAAAGATACAGTGGACATCATTTTATGTGATTTATTATTCAAATATCTTTACAAACTTAAAAATCCGGTTAAAATGGGCATTTTTGTGTTGTAATGATGAATGTTGATGAATGATGAAGTTTGTGGTGTTGGTGTGGGGAGTTTGGAAAGTTTTGAATGGTTTAACCGGATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGCGTCCATCCACACGACCAAGTAATTGGACTTAGCCTATTACATTGTCCCACTTTATGAAAGACTGTTGGGTGGCTCTATGAGTGGTTTTGGGGTAAACATGCATAAGGAGTTAGGGGGCAGTGTTTCACAACAGTGGGATTCATGAAAGTGTGACGATATAGA]




>consensus_5677#1
GAGTAGAAAAAATCATATGAATAACATTTTGGTGGCTTAAAGTGATATTTAATGTTTTTA
AGCATTGTTATATGAGATTATGGAAAGATACAGTGGACATCATTTTATGTGATTTATTAT
TCAAATATCTTTACAAACTTAAAAATCCGGTTAAAATGGGCATTTTTGTGTTGTAATGAT
GAATGTTGATGAATGATGAAGTTTGTGGTGTTGGTGTGGGGAGTTTGGAAAGTTTTGAAT
GGTTTAACCGGATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGCGTCCATC
CACACGACCAAGTAATTGGACTTAGCCTATTACATTGTCCCACTTTATGAAAGACTGTTG
GGTGGCTCTATGAGTGGTTTTGGGGTAAACATGCATAAGGAGTTAGGGGGCAGTGTTTCA
CAACAGTGGGATTCATGAAAGTGTGACGATATAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5677#0      ATCTTTTAATTTCTTTAAATATCTTTTCTTTATTTATTTAATTACCTTTTCTTTATTTTA 60
consensus_5677#1      ---------------------GAGTAGAAAAAATCATATGAATAACATTTTGGTGGCTTA 39
                                              *      * * ** * * ** * ***   *   ***

consensus_5677#0      AAATACCATTTT-TATTTCCAACCTATAGAAACCGACATCGTTTTCTTTCAAAATTTAAA 119
consensus_5677#1      AAGTGATATTTAATGTTTTTAA-------------GCATTGTTATATGAGATTATGGAAA 86
                      ** *   ****  * ***  **              *** *** * *   *  **  ***

consensus_5677#0      TATCTTTTGACCTATTACCTTTGTCTCTCTTCATGCTCTAATTTTGTTTTATTTTACCGT 179
consensus_5677#1      GATACAGTGGAC-ATCAT-TTTATGTGATTTATTATTCAAATATC-------TTTACAA- 136
                       **    **  * ** *  *** * *   **  *  ** *** *        *****   

consensus_5677#0      TTATTTATAGTACTTTTCCGTATAGGCTTTATTTGCCATCTTTTACGNATACGTACGTTA 239
consensus_5677#1      --ACTTAAAAATCCGGTTAAAATGGGCATTTTT----GTGTTGTAATGATGAATGTTGAT 190
                        * *** *   *   *    ** *** ** **     * ** **   **   *      

consensus_5677#0      GGACAATACAGAGGATTTTGTCGGCATCAGAGCTGATGTGGGATGCAGCCGACTACGCTG 299
consensus_5677#1      GAATGATGAAGTTTGTGGTGTTGGTGTGGGGAGTTTGGAAAGTTTTGAATGGTTTAACCG 250
                      * *  **  **    *  *** **  *  *   *   *   * *      *  *   * *

consensus_5677#0      AAGGCCTCTGAAAATTTCAAGGCGCAAGGCAGGAAACAATTAAAATTTTGACCCNCATGG 359
consensus_5677#1      GATTATAATTACCCCCTTATACCATGGGAAATGACATAGTTGCG---TCCATCCACACG- 306
                       *      * *     * *   *    *  * ** * * **      *  * ** ** * 

consensus_5677#0      AATAATCAACCCCATATTTACTTTATGCCTAAGGTTAATCATATGAATAACATTTGGGNG 419
consensus_5677#1      ACCAAGTAATT--GGACTTAGCCTATTACATTGTCCCACTTTATGAAAGACTGTTGGGTG 364
                      *  **  **      * ***   ***  *   *    *   ******  **  ***** *

consensus_5677#0      GGCTTAAGGNGATATTTAAAGGTTTTAAGCATTGTTATATGAGATTATGGAAAGATACAG 479
consensus_5677#1      GCTCTATGAGTGGTTTTGGGG----TAAACAT--GCATAAGGAGTTAGGGGGCAGTGT-- 416
                      *   ** *      ***   *    *** ***    *** *   *** **     *    

consensus_5677#0      TGGACATCATTTTATGTGATTTATTATTCAAATATCTTTACAAACTTAAAAA 531
consensus_5677#1      TTCACAACA----GTGGGATTCATGAAA-GTGTGACGATATAGA-------- 455
                      *  *** **     ** **** ** *      *  *  ** * *