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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1918 fasta sequence
[TCCTCCTCCCAACCCCTCCCCGACGCCACCATGCGCCCCTTCCACCCTCCCCGCCCCAACGCCGGCCAACCCCACCGCCCGCGCCCCGGCGACCCCGCCCCGCCTCCCCTCCCCATGCACCCGGGCTTCAACCCTCCGCCCGTCCCCAACCTCGCCGCCGCCAACCCCATGGCCGCCGCGGCGGCGGCCAACCCTTTCCTCGCGATGCAGCTCTTCGGCCAGGCGCAGCAGCTCCAGAGCCTCGGCTTCCTCGCCGCCGCCGCGCTCCAGCAGCACCATCACCAGCCGCAGCCGCAGGCCCCCTTCTTCCCCGGGGGAGGTTTCCCGCCGAACCCCAACCAGTTCGGGGCCTTCCCTGTCCAGCACGCCGGGTTCAACGGCGGCGGGGCGTTTCGACCTGGTGGCGTGGGCGTGGGCGTGGCCGGCCCCCGTACTCCCCGCCCGATGATGGGCGCCCCTGGTAATGGTTACAACAGCGGTGGCGGCAGCGGCCATGGTACCGGAGCTGGTGCGCCGAGACCCATGCTGAATGGTGGGGGGAACGATCGGAATAGCAGTGCTGGGAAGGGCGGTGAGGTAAACCACACTAAGATCAAGCCAGATGGCATCCCTCGTTTTACCTCTGAAAATGGTGAGAGGAAAAATACAACAGATCAGAAAGCCCGATTCAACTCTGGAAGAGATTGTAGGGATAGCAGGCAATTTGGCCCATCTGGTGGAAGGGGAAGGGGAAGGGGAAGGTCTTTCAATCAAGGTCGTGGAGGAGGAAACAACAACTGGAGAGATGCAAAATCCAACTTCAGAAGCAGTGACAGTCCAAGTCCAGCATCAGGACAACGCCGCAATGACAGTCCAGCATCTGGAGGACACCGGAAGCGGCCTCGTATAATTTATGATGCAAACGAAGTTAAACAGTGGCTTGAAGCACGCAAGAAGAACTATCCTACAAGTGTCAACATAAATAAGAAGTTGTCTGAGAGTCGACCAGATGGTGAGAAGAAGGATGAAGAGGCCCAAATGCGCCGTCAGGAACTCAAGGAAGTATTAGAAAAACAGAAAGAATTGGGTTTTGAACTCCCTGAACTACCACCTGGCTATCTATCTGAACATGAGGATCAAGGCAATGGTAGGAGAAGTAACTGGAAAACACAACGCAGGGATTGTCGTTTTGGAAACCGTGCTGATAACAAAAGATCAAGGTATGACCGCAATGATTTTCAGTCTAAGAGACCCAAGGTACGGAACCAAACTCATTGTGATGATGGGGCAGTGCTCAAGAGCAGGGAGCCAACCCTCTTGCAGAAACTTCTTAGTTCGGATGTCAAGAGGGACAGGCATAGGCTTCTCCACACGTTCAAATTCATGGTCCTTAACAATTTCTTCAGTGATTATCCTGATAAGCCCTTGGAGTTTCCTAGTGTTAAAGTAAACCAGATCGAACTTGAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAG-GACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGAGAATCAGACCTCGATGACGACAATGATGATGAAGATGAAGAAGATGATGATGATGGCAATGG-CAGTGCTGAGAGCAGCGACAAGGATGAGAACGAGGACGTCGATGCAGGGCAGATGTAATACGCCGTTTTTTTAAAACATGATGGAAGTAAACGACTCCAGACGTCTACACCCAAAGGTATACTCAACCAAAATGTAATGCACCTGAAGTCAGAGGTGCAAGTATCCAGCAGGGCACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGCCTTTGAAATTTTGTTATCAGTTGCATTTGCTATTATGTGTTTTGCTGTTTGGAGAAAAAAAA]
[+] EMBL AK073886 [TCCTCCTCCCAACCCCTCCCCGACGCCACCATGCGCCCCTTCCACCCTCCCCGCCCCAACGCCGGCCAACCCCACCGCCCGCGCCCCGGCGACCCCGCCCCGCCTCCCCTCCCCATGCACCCGGGCTTCAACCCTCCGCCCGTCCCCAACCTCGCCGCCGCCAACCCCATGGCCGCCGCGGCGGCGGCCAACCCTTTCCTCGCGATGCAGCTCTTCGGCCAGGCGCAGCAGCTCCAGAGCCTCGGCTTCCTCGCCGCCGCCGCGCTCCAGCAGCACCATCACCAGCCGCAGCCGCAGGCCCCCTTCTTCCCCGGGGGAGGTTTCCCGCCGAACCCCAACCAGTTCGGGGCCTTCCCTGTCCAGCACGCCGGGTTCAACGGCGGCGGGGCGTTTCGACCTGGTGGCGTGGGCGTGGGCGTGGCCGGCCCCCGTACTCCCCGCCCGATGATGGGCGCCCCTGGTAATGGTTACAACAGCGGTGGCGGCAGCGGCCATGGTACCGGAGCTGGTGCGCCGAGACCCATGCTGAATGGTGGGGGGAACGATCGGAATAGCAGTGCTGGGAAGGGCGGTGAGGTAAACCACACTAAGATCAAGCCAGATGGCATCCCTCGTTTTACCTCTGAAAATGGTGAGAGGAAAAATACAACAGATCAGAAAGCCCGATTCAACTCTGGAAGAGATTGTAGGGATAGCAGGCAATTTGGCCCATCTGGTGGAAGGGGAAGGGGAAGGGGAAGGTCTTTCAATCAAGGTCGTGGAGGAGGAAACAACAACTGGAGAGATGCAAAATCCAACTTCAGAAGCAGTGACAGTCCAAGTCCAGCATCAGGACAACGCCGCAATGACAGTCCAGCATCTGGAGGACACCGGAAGCGGCCTCGTATAATTTATGATGCAAACGAAGTTAAACAGTGGCTTGAAGCACGCAAGAAGAACTATCCTACAAGTGTCAACATAAATAAGAAGTTGTCTGAGAGTCGACCAGATGGTGAGAAGAAGGATGAAGAGGCCCAAATGCGCCGTCAGGAACTCAAGGAAGTATTAGAAAAACAGAAAGAATTGGGTTTTGAACTCCCTGAACTACCACCTGGCTATCTATCTGAACATGAGGATCAAGGCAATGGTAGGAGAAGTAACTGGAAAACACAACGCAGGGATTGTCGTTTTGGAAACCGTGCTGATAACAAAAGATCAAGGTATGACCGCAATGATTTTCAGTCTAAGAGACCCAAGGTACGGAACCAAACTCATTGTGATGATGGGGCAGTGCTCAAGAGCAGGGAGCCAACCCTCTTGCAGAAACTTCTTAGTTCGGATGTCAAGAGGGACAGGCATAGGCTTCTCCACACGTTCAAATTCATGGTCCTTAACAATTTCTTCAGTGATTATCCTGATAAGCCCTTGGAGTTTCCTAGTGTTAAAGTAAACCAGATCGAACTTGAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAG GACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGAGAATCAGACCTCGATGACGACAATGATGATGAAGATGAAGAAGATGATGATGATGGCAATGG CAGTGCTGAGAGCAGCGACAAGGATGAGAACGAGGACGTCGATGCAGGGCAGATGTAATACGCCGTTTTTTTAAAACATGATGGAAGTAAACGACTCCAGACGTCTACACCCAAAGGTATACTCAACCAAAATGTAATGCACCTGAAGTCAGAGGTGCAAGTATCCAGCAGGGCACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGCCTTTGAAATTTTGTTATCAG ]
[+] EMBL BI812728 [ GAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAGTGACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGAGAATCAGACCTCGATGACGACCATGATGATGAAGATGAAGAAGATGATGATGATGGCAATGGCCAGTGCTGAGAGCAGCGACAAGGATGAG ACGAGGACGTCGATGCAGGGCAGATGTAATAC CCGTTTTTTT AAACATGATGGAAGTAAACGACTCCAGACGTCTACACCCAAAGGTATACTCAACCAAAATGTAATGCACCTGAAGTCAGAGGTGCAAGTATCCAGCAGGGCACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGCCTTTGAAATTTTGTTATCAGTTGCATTTGCTATTATGTGTTTTGCTGTTTGGAGAAAAAAAA]
consensusID : consensus_5684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence
[TGATGGAAGTAAACGACTCCAGACGTGCTACACCCAAGGTATACTGCAACCCAAATGTAATGGCACCTGAAGTCCAGAGGTGCAAGTATCCAGCAGGGCACAGCCAACTGTGTTTTTGTGTATATTGGCGTTGCACAATGATGATTTAGTACT]
[+] EMBL BI805569 [TGATGGAAGTAAACGACTCCAGACGTGCTACACCCAAGGTATACTGCAACCCAAATGTAATGGCACCTGAAGTCCAGAGGTGCAAGTATCCAGCAGGGCACAGCCAACTGTGTTTTTGTGTATATTGGCGTTGCACAATGATGATTTAGTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5684#0 TCCTCCTCCCAACCCCTCCCCGACGCCACCATGCGCCCCTTCCACCCTCCCCGCCCCAAC 60
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GCCGGCCAACCCCACCGCCCGCGCCCCGGCGACCCCGCCCCGCCTCCCCTCCCCATGCAC 120
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 CCGGGCTTCAACCCTCCGCCCGTCCCCAACCTCGCCGCCGCCAACCCCATGGCCGCCGCG 180
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GCGGCGGCCAACCCTTTCCTCGCGATGCAGCTCTTCGGCCAGGCGCAGCAGCTCCAGAGC 240
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 CTCGGCTTCCTCGCCGCCGCCGCGCTCCAGCAGCACCATCACCAGCCGCAGCCGCAGGCC 300
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 CCCTTCTTCCCCGGGGGAGGTTTCCCGCCGAACCCCAACCAGTTCGGGGCCTTCCCTGTC 360
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 CAGCACGCCGGGTTCAACGGCGGCGGGGCGTTTCGACCTGGTGGCGTGGGCGTGGGCGTG 420
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GCCGGCCCCCGTACTCCCCGCCCGATGATGGGCGCCCCTGGTAATGGTTACAACAGCGGT 480
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GGCGGCAGCGGCCATGGTACCGGAGCTGGTGCGCCGAGACCCATGCTGAATGGTGGGGGG 540
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 AACGATCGGAATAGCAGTGCTGGGAAGGGCGGTGAGGTAAACCACACTAAGATCAAGCCA 600
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GATGGCATCCCTCGTTTTACCTCTGAAAATGGTGAGAGGAAAAATACAACAGATCAGAAA 660
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GCCCGATTCAACTCTGGAAGAGATTGTAGGGATAGCAGGCAATTTGGCCCATCTGGTGGA 720
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 AGGGGAAGGGGAAGGGGAAGGTCTTTCAATCAAGGTCGTGGAGGAGGAAACAACAACTGG 780
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 AGAGATGCAAAATCCAACTTCAGAAGCAGTGACAGTCCAAGTCCAGCATCAGGACAACGC 840
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 CGCAATGACAGTCCAGCATCTGGAGGACACCGGAAGCGGCCTCGTATAATTTATGATGCA 900
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 AACGAAGTTAAACAGTGGCTTGAAGCACGCAAGAAGAACTATCCTACAAGTGTCAACATA 960
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 AATAAGAAGTTGTCTGAGAGTCGACCAGATGGTGAGAAGAAGGATGAAGAGGCCCAAATG 1020
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 CGCCGTCAGGAACTCAAGGAAGTATTAGAAAAACAGAAAGAATTGGGTTTTGAACTCCCT 1080
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GAACTACCACCTGGCTATCTATCTGAACATGAGGATCAAGGCAATGGTAGGAGAAGTAAC 1140
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 TGGAAAACACAACGCAGGGATTGTCGTTTTGGAAACCGTGCTGATAACAAAAGATCAAGG 1200
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 TATGACCGCAATGATTTTCAGTCTAAGAGACCCAAGGTACGGAACCAAACTCATTGTGAT 1260
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GATGGGGCAGTGCTCAAGAGCAGGGAGCCAACCCTCTTGCAGAAACTTCTTAGTTCGGAT 1320
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GTCAAGAGGGACAGGCATAGGCTTCTCCACACGTTCAAATTCATGGTCCTTAACAATTTC 1380
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 TTCAGTGATTATCCTGATAAGCCCTTGGAGTTTCCTAGTGTTAAAGTAAACCAGATCGAA 1440
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 CTTGAAAGCAACATTGCTGAAGAGGACCTAGATGACTTGATGAACAGCGAGACGGCAAAG 1500
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GACAGCATCCTTGATTTGAAGGAAAATGGTGATCAGAAAGACTCGAGCTCAATTGATGGA 1560
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GAATCAGACCTCGATGACGACAATGATGATGAAGATGAAGAAGATGATGATGATGGCAAT 1620
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 GGCAGTGCTGAGAGCAGCGACAAGGATGAGAACGAGGACGTCGATGCAGGGCAGATGTAA 1680
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 TACGCCGTTTTTTTAAAACATGATGGAAGTAAACGACTCCAGACGT-CTACACCCAAAGG 1739
consensus_5684#1 --------------------TGATGGAAGTAAACGACTCCAGACGTGCTACACCCAA-GG 39
************************** ********** **
consensus_5684#0 TATACT-CAACCAAAATGTAATG-CACCTGAAGTC-AGAGGTGCAAGTATCCAGCAGGGC 1796
consensus_5684#1 TATACTGCAACCCAAATGTAATGGCACCTGAAGTCCAGAGGTGCAAGTATCCAGCAGGGC 99
****** ***** ********** *********** ************************
consensus_5684#0 ACAGGCCAACTGTGTTTTTGGTGTATAGTTGGCGTTCACAAATGATATTTATGTAGCTGC 1856
consensus_5684#1 ACAG-CCAACTGTGTTTTTG-TGTATA-TTGGCGTTGCACAATGATGATTTAGTACT--- 153
**** *************** ****** ******** ****** ** ***
consensus_5684#0 CTTTGAAATTTTGTTATCAGTTGCATTTGCTATTATGTGTTTTGCTGTTTGGAGAAAAAA 1916
consensus_5684#1 ------------------------------------------------------------
consensus_5684#0 AA 1918
consensus_5684#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||