cluster # 5698

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Oryza sativa
cluster # 5698 cluster # 5698 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5698#0 length = 398 sequences # 1

consensus_5698#1 length = 362 sequences # 1
consensus_5698#2 length = 339 sequences # 1

consensusID : consensus_5698#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [GTACCATATACTGGTTGTATCGCCGCACGAGTTTGCCCAATTGTTGATGAGAAAGTTCATGTAACGTGGGAAACTAAAAAACATTGGAGAACAGCGAATTCAACGAAGGGATCGAGTCTTTGAGTTGACTAGATTTTTTAGCGCTTGCCAACTTGTACACTCCAGATATACACGTCTGTGCTTGTAACATTCTTGAGATCTTAGACGCCCGCACCCTTACATTTGACTCGCCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCAACGTAAAGCCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTTAACAAAAAAAAAA]

[+] EMBL BI812770             [GTACCATATACTGGTTGTATCGCCGCACGAGTTTGCCCAATTGTTGATGAGAAAGTTCATGTAACGTGGGAAACTAAAAAACATTGGAGAACAGCGAATTCAACGAAGGGATCGAGTCTTTGAGTTGACTAGATTTTTTAGCGCTTGCCAACTTGTACACTCCAGATATACACGTCTGTGCTTGTAACATTCTTGAGATCTTAGACGCCCGCACCCTTACATTTGACTCGCCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCAACGTAAAGCCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTTAACAAAAAAAAAA]




>consensus_5698#0
GTACCATATACTGGTTGTATCGCCGCACGAGTTTGCCCAATTGTTGATGAGAAAGTTCAT
GTAACGTGGGAAACTAAAAAACATTGGAGAACAGCGAATTCAACGAAGGGATCGAGTCTT
TGAGTTGACTAGATTTTTTAGCGCTTGCCAACTTGTACACTCCAGATATACACGTCTGTG
CTTGTAACATTCTTGAGATCTTAGACGCCCGCACCCTTACATTTGACTCGCCAGAGAAAG
AGCGTAAAAGAACTGAAGAAAGATCAACGTAAAGCCAGTCTGTATTTTTGGGAGTCTGTA
AAGCGTTAGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATG
TATTTTTGTGCCCAAACTGCAGGTTAACAAAAAAAAAA

consensusID : consensus_5698#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [GATGAGAAAGTTCACTTAACTTGGAAACCTATAAAAACCACTGGAGAAGCCACGCGAATTCACCGAAGGGATCGAGGCTTTGAGTTGAACTAGATGTTTTAGGCGCTTGGCAACTTGTACATCCACGATATACACACCGCTCTGTGCCTTGTAACATTCTTGAGATTCTTAGAAACCGGCCGCCACCCCTTACACTTTGACTGCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCCAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTAACA]

[+] EMBL BQ909205             [GATGAGAAAGTTCACTTAACTTGGAAACCTATAAAAACCACTGGAGAAGCCACGCGAATTCACCGAAGGGATCGAGGCTTTGAGTTGAACTAGATGTTTTAGGCGCTTGGCAACTTGTACATCCACGATATACACACCGCTCTGTGCCTTGTAACATTCTTGAGATTCTTAGAAACCGGCCGCCACCCCTTACACTTTGACTGCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCCAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCTATTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTAACA]




>consensus_5698#1
GATGAGAAAGTTCACTTAACTTGGAAACCTATAAAAACCACTGGAGAAGCCACGCGAATT
CACCGAAGGGATCGAGGCTTTGAGTTGAACTAGATGTTTTAGGCGCTTGGCAACTTGTAC
ATCCACGATATACACACCGCTCTGTGCCTTGTAACATTCTTGAGATTCTTAGAAACCGGC
CGCCACCCCTTACACTTTGACTGCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCCAA
CGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCTATTTTTTGCTT
TTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGCCCAAACTGCAGGTAA
CA

consensusID : consensus_5698#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [TTCATTAAACTNTGAAAANCTCAAAAACATGNAGAAGCAGCGAATTCCCGANGGGANCGAGGCTTTGAGTTGACTAGATGTTTTAGGCGTTGGCAACTTGTACANCCAGATATACCCGTCTGTGCTTGTAACANTCTTGAGATCTTAGAAACGGCCGCACCCTTACATTTGACTGCAGAGNAAGAGCGTAAAAGAACTGAAGAAAGNTCAAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCNNTTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGGCCAAAACTGCAGGTTAAAAAAA]

[+] EMBL AU068401             [TTCATTAAACTNTGAAAANCTCAAAAACATGNAGAAGCAGCGAATTCCCGANGGGANCGAGGCTTTGAGTTGACTAGATGTTTTAGGCGTTGGCAACTTGTACANCCAGATATACCCGTCTGTGCTTGTAACANTCTTGAGATCTTAGAAACGGCCGCACCCTTACATTTGACTGCAGAGNAAGAGCGTAAAAGAACTGAAGAAAGNTCAAACGTAAAGGCAGTCTGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCNNTTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGTGCAATGTATTTTTGTGGCCAAAACTGCAGGTTAAAAAAA]




>consensus_5698#2
TTCATTAAACTNTGAAAANCTCAAAAACATGNAGAAGCAGCGAATTCCCGANGGGANCGA
GGCTTTGAGTTGACTAGATGTTTTAGGCGTTGGCAACTTGTACANCCAGATATACCCGTC
TGTGCTTGTAACANTCTTGAGATCTTAGAAACGGCCGCACCCTTACATTTGACTGCAGAG
NAAGAGCGTAAAAGAACTGAAGAAAGNTCAAACGTAAAGGCAGTCTGTATTTTTGGGAGT
CTGTAAAGCGTTAGGGCGGCNNTTTTTTGCTTTTAACTGATAGACATTTCGTTGTATTGT
GCAATGTATTTTTGTGGCCAAAACTGCAGGTTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5698#1      ---------------------------------------------GATGAGAAAGTTCAC 15
consensus_5698#2      -------------------------------------------------------TTCAT 5
consensus_5698#0      GTACCATATACTGGTTGTATCGCCGCACGAGTTTGCCCAATTGTTGATGAGAAAGTTCAT 60
                                                                             **** 

consensus_5698#1      TTAACTTGGAAACCTATAAAAACCACTGGAGAAGCCACGCGAATTCACCGAAGGGATCGA 75
consensus_5698#2      TAAACTNTGAAAANCTCAAAAACA--TGNAGAAGCA--GCGAATTC-CCGANGGGANCGA 60
consensus_5698#0      GTAACGTGGGAAACTA-AAAAACA-TTGGAGAA-CA--GCGAATTCAACGAAGGGATCGA 115
                        ***   * **     ******   ** **** *   ********  *** **** ***

consensus_5698#1      GGCTTTGAGTTGAACTAGATGTTTTAGGCGCTTGGCAACTTGTACATCCACGATATACAC 135
consensus_5698#2      GGCTTTGAGTTGA-CTAGATGTTTTAGGCG-TTGGCAACTTGTACANCCA-GATATACCC 117
consensus_5698#0      GTCTTTGAGTTGA-CTAGATTTTTTAG-CGCTTGCCAACTTGTACACTCCAGATATACAC 173
                      * *********** ****** ****** ** *** ***********  *  ******* *

consensus_5698#1      ACCGCTCTGTGCCTTGTAACATTCTTGAGATTCTTAGAAACCGGCCGCCACCCCTTACAC 195
consensus_5698#2      G----TCTGTGC-TTGTAACANTCTTGAGAT-CTTAGAAAC-GGCCGCA--CCCTTACA- 167
consensus_5698#0      G----TCTGTGC-TTGTAACATTCTTGAGAT-CTTAGACGC---CCGCA--CCCTTACA- 221
                           ******* ******** ********* ******  *   ****   ******** 

consensus_5698#1      TTTGACTG--CAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATCCAACGTAAAGGCAGTC 253
consensus_5698#2      TTTGACTG--CAGAGNAAGAGCGTAAAAGAACTGAAGAAAGNTCAAACGTAAAGGCAGTC 225
consensus_5698#0      TTTGACTCGCCAGAGAAAGAGCGTAAAAGAACTGAAGAAAGATC-AACGTAAAGCCAGTC 280
                      *******   ***** ************************* ** ********* *****

consensus_5698#1      TGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCTATTTTTTGCTTTTAACTGATAGAC 313
consensus_5698#2      TGTATTTTTGGGAGTCTGTAAAGCGTTAGGGCGGCNNTTTTTTGCTTTTAACTGATAGAC 285
consensus_5698#0      TGTATTTTTGGGAGTCTGTAAAGCGTTAGG-CGGCTATTTTTTGCTTTTAACTGATAGAC 339
                      ****************************** ****  ***********************

consensus_5698#1      ATTTCGTTGTATTGTGCAATGTATTTTTGTG-CCCAAACTGCAGGTAACA---------- 362
consensus_5698#2      ATTTCGTTGTATTGTGCAATGTATTTTTGTGGCCAAAACTGCAGGTTAAAAAAA------ 339
consensus_5698#0      ATTTCGTTGTATTGTGCAATGTATTTTTGTG-CCCAAACTGCAGGTTAACAAAAAAAAAA 398
                      ******************************* ** *********** *