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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1488 fasta sequence
[TTTATGTGCTCGAAACGCCAAAATCCTGCATCATCTTCCACGGCTCTCCAACCCCAAAAAATTCAGTCTCATTCCTTTCCTTCCCGTGGTCCATCTTGCCAGCCGTGGAAGCATCAGCAATGAGCTCGCATTCCCATGCATGGTCTGGTCGCTGAGATGAAGATGAAGACGGCACCACATTTTGCCGGGAAGCCGACCGGCTGACAACGCCGTGCAGCCACTGCAATTCGCTACTACGGAATTCAGTCTGAAACTCTGAACAAATTTCAGAGAGAGAGAGGCAATTCGCTACTCTGAAACTCTGAACAAAATTTCAGAGGGAGAGAGAGGGGATGCGATTGCAAGTTTGCAATGCAAGGGTTGTAACAATCACATTACAAATCAGAGGCAACAGATTACAAGATCACTACTAGATCAGCACTCCATCAGCTAAGGTCTTTTTTCTCTCTCGCGAGGTTAATCACAGGGATCAAAATTAGTGACACAAATCTACACACTCCTAACACACAAAGATCTCGTCCTCTTTTTTCCTTCTTTTTTGGGGGTGGTTGTTGTTGTTTGGACCATCCAGCCTCCTTGATAATTGTCGTCATTGGCATTCAATTCACTGGATCAAGGAATGGCAGCGGCGGCGGTGGTGGTGGTGGTGGTTGAGGCAGATGAAGACGAACAAGGTATTCGATCGAGGACCAGCACGGCGTCCCTCATGGCGGGCCTCTTGCCGGGCGCCATGGCGCAGCAGGCGAAGGCGAGCTTGAAGCAGGCGAGCAGGGCGTCCTCCCTGCCGTCGGCCTCGCCGCGGAGCGTCGGGTCGGCCATGCGGAGCAGCCGGCTCCGCTCCTCGACGACGAACCCGGCGTGCCACTGGCAGAGCTCCACCTCCGAGTAGACCCTCCCGGAGAGGAGCTCCAGGAGCACCATGCCGAAGGAGTAGACGTCCCACTTGGTGTTCGGCCTGAGGTTCTTGAGGCACTCCGGCGCCTGGTACGGCGGCGGCGCGGCCGCGGCTGCGGCCGACGTCGCCGCAGACGACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCCTGCAAATCGCCCATCATCTTTCCATTAAAATTTCTAATCTCTACACCTCAGTTTTTGCTTAGTTTGCAAGTGAATTTAGTGCTTATAAAGTTGGTCTACTGTTCCTGCATAATCAATGCCAAATTACGAGCT]
[+] EMBL AK109644 [TTTATGTGCTCGAAACGCCAAAATCCTGCATCATCTTCCACGGCTCTCCAACCCCAAAAAATTCAGTCTCATTCCTTTCCTTCCCGTGGTCCATCTTGCCAGCCGTGGAAGCATCAGCAATGAGCTCGCATTCCCATGCATGGTCTGGTCGCTGAGATGAAGATGAAGACGGCACCACATTTTGCCGGGAAGCCGACCGGCTGACAACGCCGTGCAGCCACTGCAATTCGCTACTACGGAATTCAGTCTGAAACTCTGAACAAATTTCAGAGAGAGAGAGGCAATTCGCTACTCTGAAACTCTGAACAAAATTTCAGAGGGAGAGAGAGGGGATGCGATTGCAAGTTTGCAATGCAAGGGTTGTAACAATCACATTACAAATCAGAGGCAACAGATTACAAGATCACTACTAGATCAGCACTCCATCAGCTAAGGTCTTTTTTCTCTCTCGCGAGGTTAATCACAGGGATCAAAATTAGTGACACAAATCTACACACTCCTAACACACAAAGATCTCGTCCTCTTTTTTCCTTCTTTTTTGGGGGTGGTTGTTGTTGTTTGGACCATCCAGCCTCCTTGATAATTGTCGTCATTGGCATTCAATTCACTGGATCAAGGAATGGCAGCGGCGGCGGTGGTGGTGGTGGTGGTTGAGGCAGATGAAGACGAACAAGGTATTCGATCGAGGACCAGCACGGCGTCCCTCATGGCGGGCCTCTTGCCGGGCGCCATGGCGCAGCAGGCGAAGGCGAGCTTGAAGCAGGCGAGCAGGGCGTCCTCCCTGCCGTCGGCCTCGCCGCGGAGCGTCGGGTCGGCCATGCGGAGCAGCCGGCTCCGCTCCTCGACGACGAACCCGGCGTGCCACTGGCAGAGCTCCACCTCCGAGTAGACCCTCCCGGAGAGGAGCTCCAGGAGCACCATGCCGAAGGAGTAGACGTCCCACTTGGTGTTCGGCCTGAGGTTCTTGAGGCACTCCGGCGCCTGGTACGGCGGCGGCGCGGCCGCGGCTGCGGCCGACGTCGCCGCAGACGACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCCTGCAAATCGCCCATCATCTTTCCATTAAAATTTCTAATCTCTACACCTCAGTTTTTGCTTAGTTTGCAAGTGAATTTAGTGCTTATAAAGTTGGTCTACTGTTCCTGCATAATCAATGCCAAATTACGAGCT]
[+] EMBL AU176490 [ CATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAA ]
consensusID : consensus_5699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[GACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGGCGAATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCTGCTGAAGGCGATGTTGGCGAGGCTGCCATTGGTGGCGTAGTCATGGATGAGGAGCTTCTCGTCGGCGCCCCAGTAGAAGCCGCGGAGGCGGGAGGGATGTTCGGGTGGCGGAAGCGCGC]
[-] EMBL C99530 [GACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGGCAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGTGCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGGCTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTTCTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGGCGAATCCGCAGCCGCGCCTCCAAGCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCTGCTGAAGGCGATGTTGGCGAGGCTGCCATTGGTGGCGTAGTCATGGATGAGGAGCTTCTCGTCGGCGCCCCAGTAGAAGCCGCGGAGGCGGGAGGGATGTTCGGGTGGCGGAAGCGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5699#0 TTTATGTGCTCGAAACGCCAAAATCCTGCATCATCTTCCACGGCTCTCCAACCCCAAAAA 60
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 ATTCAGTCTCATTCCTTTCCTTCCCGTGGTCCATCTTGCCAGCCGTGGAAGCATCAGCAA 120
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 TGAGCTCGCATTCCCATGCATGGTCTGGTCGCTGAGATGAAGATGAAGACGGCACCACAT 180
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 TTTGCCGGGAAGCCGACCGGCTGACAACGCCGTGCAGCCACTGCAATTCGCTACTACGGA 240
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 ATTCAGTCTGAAACTCTGAACAAATTTCAGAGAGAGAGAGGCAATTCGCTACTCTGAAAC 300
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 TCTGAACAAAATTTCAGAGGGAGAGAGAGGGGATGCGATTGCAAGTTTGCAATGCAAGGG 360
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 TTGTAACAATCACATTACAAATCAGAGGCAACAGATTACAAGATCACTACTAGATCAGCA 420
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 CTCCATCAGCTAAGGTCTTTTTTCTCTCTCGCGAGGTTAATCACAGGGATCAAAATTAGT 480
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 GACACAAATCTACACACTCCTAACACACAAAGATCTCGTCCTCTTTTTTCCTTCTTTTTT 540
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 GGGGGTGGTTGTTGTTGTTTGGACCATCCAGCCTCCTTGATAATTGTCGTCATTGGCATT 600
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 CAATTCACTGGATCAAGGAATGGCAGCGGCGGCGGTGGTGGTGGTGGTGGTTGAGGCAGA 660
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 TGAAGACGAACAAGGTATTCGATCGAGGACCAGCACGGCGTCCCTCATGGCGGGCCTCTT 720
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 GCCGGGCGCCATGGCGCAGCAGGCGAAGGCGAGCTTGAAGCAGGCGAGCAGGGCGTCCTC 780
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 CCTGCCGTCGGCCTCGCCGCGGAGCGTCGGGTCGGCCATGCGGAGCAGCCGGCTCCGCTC 840
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 CTCGACGACGAACCCGGCGTGCCACTGGCAGAGCTCCACCTCCGAGTAGACCCTCCCGGA 900
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 GAGGAGCTCCAGGAGCACCATGCCGAAGGAGTAGACGTCCCACTTGGTGTTCGGCCTGAG 960
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 GTTCTTGAGGCACTCCGGCGCCTGGTACGGCGGCGGCGCGGCCGCGGCTGCGGCCGACGT 1020
consensus_5699#1 ------------------------------------------------------------
consensus_5699#0 CGCCGCAGACGACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGG 1080
consensus_5699#1 ----------GACGACCCGCATGGGCTGGCGCCGGCGCCGGGCATCTGGGACAGGTCGGG 50
**************************************************
consensus_5699#0 CAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGT 1140
consensus_5699#1 CAGGCTGCTCGTCGAGTGCATCGAGCGCTTGCTCCCGAACAGCCTCGCCGACGCGCCCGT 110
************************************************************
consensus_5699#0 GCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGG 1200
consensus_5699#1 GCTCCGGTGCACGGCCTCGCCGGAGAGCAGCCGGTCCAGGCCGAAGTCGCCGATCCACGG 170
************************************************************
consensus_5699#0 CTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTT 1260
consensus_5699#1 CTCCATGTCGGCGCCGAGCAGGATGTTGCTCGGCTTCACGTTGCCGTGCACCCCCTTCTT 230
************************************************************
consensus_5699#0 CTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGCGCGATCCGCAGCCGCGCCTCCAA 1320
consensus_5699#1 CTCGTGGATGAACGCCAGCCCGCGCGCCACGCCGCGGCGAATCCGCAGCCGCGCCTCCAA 290
************************************ ********************
consensus_5699#0 GCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCC--CTGCAAAT--CGCCCATCATCTT 1376
consensus_5699#1 GCTCAGCTGCAGCGGCGACGACGCCCCGAACCGCCTGCTGAAGGCGATGTTGGCGAGGCT 350
*********************************** *** * * * *
consensus_5699#0 TCCATTAAAATTTCTAATCTCTACACCTCAGTTTTTGCTTAGTTTGCAAGTGAATTTAGT 1436
consensus_5699#1 GCCATTGGTGGCG-TAGTCATGGATGAGGAGCTTCTCGTCGGCGCCCCAGTAGAAGCCGC 409
***** ** ** ** ** * * * * *** * *
consensus_5699#0 GCTTATAAAGTTGGTCTACTGTTCCTGCATAATCAATGCCAAATTACGAGCT 1488
consensus_5699#1 G-----GAGGCGGGAGGGATGTTCGGGTGGCGGAAGCGCGC----------- 445
* * * ** ***** * * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||